Found: 51

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  • A second unveiling: Haplotig masking of the eastern oyster genome improves population‐level inference.

    Published in:
    Molecular Ecology Resources, 2024, v. 24, n. 1, p. 1, doi. 10.1111/1755-0998.13801
    By:
    • Puritz, Jonathan B.;
    • Guo, Ximing;
    • Hare, Matthew;
    • He, Yan;
    • Hillier, LaDeana W.;
    • Jin, Shubo;
    • Liu, Ming;
    • Lotterhos, Katie E.;
    • Minx, Pat;
    • Modak, Tejashree;
    • Proestou, Dina;
    • Rice, Edward S.;
    • Tomlinson, Chad;
    • Warren, Wesley C.;
    • Witkop, Erin;
    • Zhao, Honggang;
    • Gomez‐Chiarri, Marta
    Publication type:
    Article

  • Whole Genome Analysis of SNV and Indel Polymorphism in Common Marmosets (Callithrix jacchus).

    Published in:
    Genes, 2023, v. 14, n. 12, p. 2185, doi. 10.3390/genes14122185
    By:
    • Harris, R. Alan;
    • Raveendran, Muthuswamy;
    • Warren, Wes;
    • LaDeana, Hillier W.;
    • Tomlinson, Chad;
    • Graves-Lindsay, Tina;
    • Green, Richard E.;
    • Schmidt, Jenna K.;
    • Colwell, Julia C.;
    • Makulec, Allison T.;
    • Cole, Shelley A.;
    • Cheeseman, Ian H.;
    • Ross, Corinna N.;
    • Capuano III, Saverio;
    • Eichler, Evan E.;
    • Levine, Jon E.;
    • Rogers, Jeffrey
    Publication type:
    Article

  • A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21733-z
    By:
    • Warren, Wesley C.;
    • Boggs, Tyler E.;
    • Borowsky, Richard;
    • Carlson, Brian M.;
    • Ferrufino, Estephany;
    • Gross, Joshua B.;
    • Hillier, LaDeana;
    • Hu, Zhilian;
    • Keene, Alex C.;
    • Kenzior, Alexander;
    • Kowalko, Johanna E.;
    • Tomlinson, Chad;
    • Kremitzki, Milinn;
    • Lemieux, Madeleine E.;
    • Graves-Lindsay, Tina;
    • McGaugh, Suzanne E.;
    • Miller, Jeffrey T.;
    • Mommersteeg, Mathilda T. M.;
    • Moran, Rachel L.;
    • Peuß, Robert
    Publication type:
    Article

  • A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism.

    Published in:
    PLoS Genetics, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.pgen.1008926
    By:
    • Buckley, Reuben M.;
    • Davis, Brian W.;
    • Brashear, Wesley A.;
    • Farias, Fabiana H. G.;
    • Kuroki, Kei;
    • Graves, Tina;
    • Hillier, LaDeana W.;
    • Kremitzki, Milinn;
    • Li, Gang;
    • Middleton, Rondo P.;
    • Minx, Patrick;
    • Tomlinson, Chad;
    • Lyons, Leslie A.;
    • Murphy, William J.;
    • Warren, Wesley C.
    Publication type:
    Article

  • The quail genome: insights into social behaviour, seasonal biology and infectious disease response.

    Published in:
    BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-0743-4
    By:
    • Morris, Katrina M.;
    • Hindle, Matthew M.;
    • Boitard, Simon;
    • Burt, David W.;
    • Danner, Angela F.;
    • Eory, Lel;
    • Forrest, Heather L.;
    • Gourichon, David;
    • Gros, Jerome;
    • Hillier, LaDeana W.;
    • Jaffredo, Thierry;
    • Khoury, Hanane;
    • Lansford, Rusty;
    • Leterrier, Christine;
    • Loudon, Andrew;
    • Mason, Andrew S.;
    • Meddle, Simone L.;
    • Minvielle, Francis;
    • Minx, Patrick;
    • Pitel, Frédérique
    Publication type:
    Article

  • Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression.

    Published in:
    BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5893-9
    By:
    • Han, Mei;
    • Wei, Guifeng;
    • McManus, Catherine E.;
    • Hillier, LaDeana W.;
    • Reinke, Valerie
    Publication type:
    Article

  • The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.

    Published in:
    Genetics, 2018, v. 208, n. 3, p. 937, doi. 10.1534/genetics.117.300657
    By:
    • Kudron, Michelle M.;
    • Victorsen, Alec;
    • Gevirtzman, Louis;
    • Hillier, LaDeana W.;
    • Fisher, William W.;
    • Vafeados, Dionne;
    • Kirkey, Matt;
    • Hammonds, Ann S.;
    • Gersch, Jeffery;
    • Ammouri, Haneen;
    • Wall, Martha L.;
    • Moran, Jennifer;
    • Steffen, David;
    • Szynkarek, Matt;
    • Seabrook-Sturgis, Samantha;
    • Jameel, Nader;
    • Kadaba, Madhura;
    • Patton, Jaeda;
    • Terrell, Robert;
    • Corson, Mitch
    Publication type:
    Article

  • A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).

    Published in:
    GigaScience, 2017, v. 6, n. 11, p. 1, doi. 10.1093/gigascience/gix098
    By:
    • Kuderna, Lukas F. K.;
    • Tomlinson, Chad;
    • Hillier, LaDeana W.;
    • Tran, Annabel;
    • Fiddes, Ian T.;
    • Armstrong, Joel;
    • Laayouni, Hafid;
    • Gordon, David;
    • Huddleston, John;
    • Perez, Raquel Garcia;
    • Povolotskaya, Inna;
    • Armero, Aitor Serres;
    • Garrido, Jéssica Gómez;
    • Ho, Daniel;
    • Ribeca, Paolo;
    • Alioto, Tyler;
    • Green, Richard E.;
    • Paten, Benedict;
    • Navarro, Arcadi;
    • Betranpetit, Jaume
    Publication type:
    Article

  • Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

    Published in:
    Nature Communications, 2017, v. 8, n. 8, p. 16153, doi. 10.1038/ncomms16153
    By:
    • Adema, Coen M.;
    • Hillier, LaDeana W.;
    • Jones, Catherine S.;
    • Loker, Eric S.;
    • Knight, Matty;
    • Minx, Patrick;
    • Oliveira, Guilherme;
    • Raghavan, Nithya;
    • Shedlock, Andrew;
    • do Amaral, Laurence Rodrigues;
    • Arican-Goktas, Halime D.;
    • Assis, Juliana G.;
    • Baba, Elio Hideo;
    • Baron, Olga L.;
    • Bayne, Christopher J.;
    • Bickham-Wright, Utibe;
    • Biggar, Kyle K.;
    • Blouin, Michael;
    • Bonning, Bryony C.;
    • Botka, Chris
    Publication type:
    Article

  • Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

    Published in:
    Nature Communications, 2017, v. 8, n. 5, p. 15451, doi. 10.1038/ncomms15451
    By:
    • Adema, Coen M.;
    • Hillier, LaDeana W.;
    • Jones, Catherine S.;
    • Loker, Eric S.;
    • Knight, Matty;
    • Minx, Patrick;
    • Oliveira, Guilherme;
    • Raghavan, Nithya;
    • Shedlock, Andrew;
    • do Amaral, Laurence Rodrigues;
    • Arican-Goktas, Halime D.;
    • Assis, Juliana G.;
    • Baba, Elio Hideo;
    • Baron, Olga L.;
    • Bayne, Christopher J.;
    • Bickham-Wright, Utibe;
    • Biggar, Kyle K.;
    • Blouin, Michael;
    • Bonning, Bryony C.;
    • Botka, Chris
    Publication type:
    Article

  • A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.

    Published in:
    G3: Genes | Genomes | Genetics, 2017, v. 7, n. 1, p. 109, doi. 10.1534/g3.116.035923
    By:
    • Warren, Wesley C.;
    • Hillier, LaDeana W.;
    • Tomlinson, Chad;
    • Minx, Patrick;
    • Kremitzki, Milinn;
    • Graves, Tina;
    • Markovic, Chris;
    • Bouk, Nathan;
    • Pruitt, Kim D.;
    • Thibaud-Nissen, Francoise;
    • Schneider, Valerie;
    • Mansour, Tamer A.;
    • Brown, C. Titus;
    • Zimin, Aleksey;
    • Hawken, Rachel;
    • Abrahamsen, Mitch;
    • Pyrkosz, Alexis B.;
    • Morisson, Mireille;
    • Fillon, Valerie;
    • Vignal, Alain
    Publication type:
    Article

  • A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination.

    Published in:
    G3: Genes | Genomes | Genetics, 2016, v. 6, n. 6, p. 1607, doi. 10.1534/g3.116.028746
    By:
    • Gang Li;
    • Hillier, LaDeana W.;
    • Grahn, Robert A.;
    • Zimin, Aleksey V.;
    • David, Victor A.;
    • Menotti-Raymond, Marilyn;
    • Middleton, Rondo;
    • Hannah, Steven;
    • Hendrickson, Sher;
    • Makunin, Alex;
    • O' Brien, Stephen J.;
    • Minx, Pat;
    • Wilson, Richard K.;
    • Lyons, Leslie A.;
    • Warren, Wesley C.;
    • Murphy, William J.
    Publication type:
    Article

  • Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.

    Published in:
    Genetics, 2015, v. 200, n. 3, p. 975, doi. 10.1534/genetics.115.175950
    By:
    • Thompson, Owen A.;
    • Basten Snoek, L.;
    • Nijveen, Harm;
    • Sterken, Mark G.;
    • Volkers, Rita J. M.;
    • Brenchley, Rachel;
    • van't Hof, Arjen;
    • Bevers, Roel P. J.;
    • Cossins, Andrew R.;
    • Yanai, Itai;
    • Hajnal, Alex;
    • Schmid, Tobias;
    • Perkins, Jaryn D.;
    • Spencer, David;
    • Kruglyak, Leonid;
    • Andersen, Erik C.;
    • Moerman, Donald G.;
    • Hillier, LaDeana W.;
    • Kammenga, Jan E.;
    • Waterston, Robert H.
    Publication type:
    Article

  • Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation.

    Published in:
    Genome Biology & Evolution, 2015, v. 7, n. 7, p. 2038, doi. 10.1093/gbe/evv119
    By:
    • Badenhorst, Daleen;
    • Hillier, LaDeana W.;
    • Literman, Robert;
    • Elisabet Montiel, Eugenia;
    • Radhakrishnan, Srihari;
    • Yingjia Shen;
    • Minx, Patrick;
    • Janes, Daniel E.;
    • Warren, Wesley C.;
    • Edwardsn, Scott V.;
    • Valenzuela, Nicole
    Publication type:
    Article

  • Isolation of Specific Neurons from C. elegans Larvae for Gene Expression Profiling.

    Published in:
    PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112102
    By:
    • Spencer, W. Clay;
    • McWhirter, Rebecca;
    • Miller, Tyne;
    • Strasbourger, Pnina;
    • Thompson, Owen;
    • Hillier, LaDeana W.;
    • Waterston, Robert H.;
    • IIIMiller, David M.
    Publication type:
    Article

  • Comparative analysis of the transcriptome across distant species.

    Published in:
    Nature, 2014, v. 512, n. 7515, p. 445, doi. 10.1038/nature13424
    By:
    • Gerstein, Mark B.;
    • Rozowsky, Joel;
    • Yan, Koon-Kiu;
    • Wang, Daifeng;
    • Cheng, Chao;
    • Brown, James B.;
    • Davis, Carrie A.;
    • Hillier, LaDeana;
    • Sisu, Cristina;
    • Li, Jingyi Jessica;
    • Pei, Baikang;
    • Harmanci, Arif O.;
    • Duff, Michael O.;
    • Djebali, Sarah;
    • Alexander, Roger P.;
    • Alver, Burak H.;
    • Auerbach, Raymond;
    • Bell, Kimberly;
    • Bickel, Peter J.;
    • Boeck, Max E.
    Publication type:
    Article

  • Comparative analysis of regulatory information and circuits across distant species.

    Published in:
    Nature, 2014, v. 512, n. 7515, p. 453, doi. 10.1038/nature13668
    By:
    • Boyle, Alan P.;
    • Araya, Carlos L.;
    • Brdlik, Cathleen;
    • Cayting, Philip;
    • Cheng, Chao;
    • Cheng, Yong;
    • Gardner, Kathryn;
    • Hillier, LaDeana W.;
    • Janette, Judith;
    • Jiang, Lixia;
    • Kasper, Dionna;
    • Kawli, Trupti;
    • Kheradpour, Pouya;
    • Kundaje, Anshul;
    • Li, Jingyi Jessica;
    • Ma, Lijia;
    • Niu, Wei;
    • Rehm, E. Jay;
    • Rozowsky, Joel;
    • Slattery, Matthew
    Publication type:
    Article

  • The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.

    Published in:
    Nature Genetics, 2013, v. 45, n. 5, p. 567, doi. 10.1038/ng.2604
    By:
    • Schartl, Manfred;
    • Walter, Ronald B;
    • Shen, Yingjia;
    • Garcia, Tzintzuni;
    • Catchen, Julian;
    • Amores, Angel;
    • Braasch, Ingo;
    • Chalopin, Domitille;
    • Volff, Jean-Nicolas;
    • Lesch, Klaus-Peter;
    • Bisazza, Angelo;
    • Minx, Pat;
    • Hillier, LaDeana;
    • Wilson, Richard K;
    • Fuerstenberg, Susan;
    • Boore, Jeffrey;
    • Searle, Steve;
    • Postlethwait, John H;
    • Warren, Wesley C
    Publication type:
    Article

  • Insights into hominid evolution from the gorilla genome sequence.

    Published in:
    Nature, 2012, v. 483, n. 7388, p. 169, doi. 10.1038/nature10842
    By:
    • Scally, Aylwyn;
    • Dutheil, Julien Y.;
    • Hillier, LaDeana W.;
    • Jordan, Gregory E.;
    • Goodhead, Ian;
    • Herrero, Javier;
    • Hobolth, Asger;
    • Lappalainen, Tuuli;
    • Mailund, Thomas;
    • Marques-Bonet, Tomas;
    • McCarthy, Shane;
    • Montgomery, Stephen H.;
    • Schwalie, Petra C.;
    • Tang, Y. Amy;
    • Ward, Michelle C.;
    • Xue, Yali;
    • Yngvadottir, Bryndis;
    • Alkan, Can;
    • Andersen, Lars N.;
    • Ayub, Qasim
    Publication type:
    Article

  • Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.

    Published in:
    Nature Genetics, 2011, v. 43, n. 12, p. 1179, doi. 10.1038/ng.948
    By:
    • Deng, Xinxian;
    • Hiatt, Joseph B;
    • Nguyen, Di Kim;
    • Ercan, Sevinc;
    • Sturgill, David;
    • Hillier, LaDeana W;
    • Schlesinger, Felix;
    • Davis, Carrie A;
    • Reinke, Valerie J;
    • Gingeras, Thomas R;
    • Shendure, Jay;
    • Waterston, Robert H;
    • Oliver, Brian;
    • Lieb, Jason D;
    • Disteche, Christine M
    Publication type:
    Article

  • A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans.

    Published in:
    PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019055
    By:
    • Engelmann, Ilka;
    • Griffon, Auré lien;
    • Tichit, Laurent;
    • Montañana-Sanchis, Frédéric;
    • Wang, Guilin;
    • Reinke, Valerie;
    • Waterston, Robert H.;
    • Hillier, LaDeana W.;
    • Ewbank, Jonathan J.
    Publication type:
    Article

  • A vertebrate case study of the quality of assemblies derived from next-generation sequences.

    Published in:
    Genome Biology, 2011, v. 12, n. 3, p. 1, doi. 10.1186/gb-2011-12-3-r31
    By:
    • Ye, Liang;
    • Hillier, LaDeana W.;
    • Minx, Patrick;
    • Thane, Nay;
    • Locke, Devin P.;
    • Martin, John C.;
    • Chen, Lei;
    • Mitreva, Makedonka;
    • Miller, Jason R.;
    • Haub, Kevin V.;
    • Dooling, David J.;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Weinstock, George M.;
    • Warren, Wesley C.
    Publication type:
    Article

  • Comparative and demographic analysis of orang-utan genomes.

    Published in:
    Nature, 2011, v. 469, n. 7331, p. 529, doi. 10.1038/nature09687
    By:
    • Locke, Devin P.;
    • Hillier, LaDeana W.;
    • Warren, Wesley C.;
    • Worley, Kim C.;
    • Nazareth, Lynne V.;
    • Muzny, Donna M.;
    • Shiaw-Pyng Yang;
    • Zhengyuan Wang;
    • Chinwalla, Asif T.;
    • Minx, Pat;
    • Mitreva, Makedonka;
    • Cook, Lisa;
    • Delehaunty, Kim D.;
    • Fronick, Catrina;
    • Schmidt, Heather;
    • Fulton, Lucinda A.;
    • Fulton, Robert S.;
    • Nelson, Joanne O.;
    • Magrini, Vincent;
    • Pohl, Craig
    Publication type:
    Article

  • The development and characterization of a 60K SNP chip for chicken.

    Published in:
    BMC Genomics, 2011, v. 12, n. 1, p. 274, doi. 10.1186/1471-2164-12-274
    By:
    • Groenen, Martien A. M.;
    • Megens, Hendrik-Jan;
    • Zare, Yalda;
    • Warren, Wesley C.;
    • Hillier, LaDeana W.;
    • Crooijmans, Richard P. M. A.;
    • Vereijken, Addie;
    • Okimoto, Ron;
    • Muir, William M.;
    • Cheng, Hans H.
    Publication type:
    Article

  • The genome of a songbird.

    Published in:
    Nature, 2010, v. 464, n. 7289, p. 757, doi. 10.1038/nature08819
    By:
    • Warren, Wesley C.;
    • Clayton, David F.;
    • Ellegren, Hans;
    • Arnold, Arthur P.;
    • Hillier, LaDeana W.;
    • Künstner, Axel;
    • Searle, Steve;
    • White, Simon;
    • Vilella, Albert J.;
    • Fairley, Susan;
    • Heger, Andreas;
    • Kong, Lesheng;
    • Ponting, Chris P.;
    • Jarvis, Erich D.;
    • Mello, Claudio V.;
    • Minx, Pat;
    • Lovell, Peter;
    • Velho, Tarciso A. F.;
    • Ferris, Margaret;
    • Balakrishnan, Christopher N.
    Publication type:
    Article

  • Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/ FOXA in Development and Environmental Response.

    Published in:
    PLoS Genetics, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pgen.1000848
    By:
    • Mei Zhong;
    • Wei Niu;
    • Zhi John Lu;
    • Sarov, Mihail;
    • Murray4, John I.;
    • Janette, Judith;
    • Raha, Debasish;
    • Sheaffer, Karyn L.;
    • Lam, Hugo Y. K.;
    • Preston, Elicia;
    • Slightham, Cindie;
    • Hillier, LaDeana W.;
    • Brock, Trisha;
    • Agarwal, Ashish;
    • Auerbach, Raymond;
    • Hyman, Anthony A.;
    • Gerstein, Mark;
    • Mango, Susan E.;
    • Kim, Stuart K.;
    • Waterston, Robert H.
    Publication type:
    Article

  • Comparison and calibration of transcriptome datafrom RNA-Seq and tiling arrays.

    Published in:
    BMC Genomics, 2010, v. 11, p. 383, doi. 10.1186/1471-2164-11-383
    By:
    • Agarwal, Ashish;
    • Koppstein, David;
    • Rozowsky, Joel;
    • Sboner, Andrea;
    • Habegger, Lukas;
    • Hillier, LaDeana W.;
    • Sasidharan, Rajkumar;
    • Reinke, Valerie;
    • Waterston, Robert H.;
    • Gerstein, Mark
    Publication type:
    Article

  • Lineage-Specific Biology Revealed by a Finished Genome Assembly of the Mouse.

    Published in:
    PLoS Biology, 2009, v. 7, n. 5, p. 1, doi. 10.1371/journal.pbio.1000112
    By:
    • Church, Deanna M.;
    • Goodstadt, Leo;
    • Hillier, LaDeana W.;
    • Zody, Michael C.;
    • Goldstein, Steve;
    • Xinwe She;
    • Bult, Carol J.;
    • Agarwala, Richa;
    • Cherry, Joshua L.;
    • DiCuccio, Michael;
    • Hlavina, Wratko;
    • Kapustin, Yuri;
    • Meric, Peter;
    • Maglott, Donna;
    • Birtle, Zoë;
    • Marques, Ana C.;
    • Graves, Tina;
    • Shiguo Zhou;
    • Teague, Brian;
    • Potamousis, Konstantinos
    Publication type:
    Article

  • A burst of segmental duplications in the genome of the African great ape ancestor.

    Published in:
    2009
    By:
    • Marques-Bonet, Tomas;
    • Kidd, Jeffrey M.;
    • Ventura, Mario;
    • Graves, Tina A.;
    • Cheng, Ze;
    • Hillier, LaDeana W.;
    • Jiang, Zhaoshi;
    • Baker, Carl;
    • Malfavon-Borja, Ray;
    • Fulton, Lucinda A.;
    • Nazareth, Lynne V.;
    • Muzny, Donna M.;
    • Alkan, Can;
    • Aksay, Gozde;
    • Girirajan, Santhosh;
    • Siswara, Priscillia;
    • Chen, Lin;
    • Cardone, Maria Francesca;
    • Navarro, Arcadi;
    • Gibbs, Richard A.
    Publication type:
    Correction notice

  • A burst of segmental duplications in the genome of the African great ape ancestor.

    Published in:
    Nature, 2009, v. 457, n. 7231, p. 877, doi. 10.1038/nature07744
    By:
    • Marques-Bonet, Tomas;
    • Kidd, Jeffrey M.;
    • Ventura, Mario;
    • Graves, Tina A.;
    • Cheng, Ze;
    • Hillier, LaDeana W.;
    • Jiang, Zhaoshi;
    • Baker, Carl;
    • Malfavon-Borja, Ray;
    • Fulton, Lucinda A.;
    • Alkan, Can;
    • Aksay, Gozde;
    • Girirajan, Santhosh;
    • Siswara, Priscillia;
    • Chen, Lin;
    • Cardone, Maria Francesca;
    • Navarro, Arcadi;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Eichler, Evan E.
    Publication type:
    Article

  • DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

    Published in:
    Nature, 2008, v. 456, n. 7218, p. 66, doi. 10.1038/nature07485
    By:
    • Ley, Timothy J.;
    • Mardis, Elaine R.;
    • Ding, Li;
    • Fulton, Bob;
    • McLellan, Michael D.;
    • Chen, Ken;
    • Dooling, David;
    • Dunford-Shore, Brian H.;
    • McGrath, Sean;
    • Hickenbotham, Matthew;
    • Cook, Lisa;
    • Abbott, Rachel;
    • Larson, David E.;
    • Koboldt, Dan C.;
    • Pohl, Craig;
    • Smith, Scott;
    • Hawkins, Amy;
    • Abbott, Scott;
    • Locke, Devin;
    • Hillier, LaDeana W.
    Publication type:
    Article

  • Genome analysis of the platypus reveals unique signatures of evolution.

    Published in:
    2008
    By:
    • Warren, Wesley C.;
    • Hillier, LaDeana W.;
    • Marshall Graves, Jennifer A.;
    • Birney, Ewan;
    • Ponting, Chris P.;
    • Grützner, Frank;
    • Belov, Katherine;
    • Miller, Webb;
    • Clarke, Laura;
    • Chinwalla, Asif T.;
    • Yang, Shiaw-Pyng;
    • Heger, Andreas;
    • Locke, Devin P.;
    • Miethke, Pat;
    • Waters, Paul D.;
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    • Fulton, Bob;
    • Graves, Tina;
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  • Genome analysis of the platypus reveals unique signatures of evolution.

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    Nature, 2008, v. 453, n. 7192, p. 175, doi. 10.1038/nature06936
    By:
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    • Hillier, LaDeana W.;
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    • Miller, Webb;
    • Clarke, Laura;
    • Chinwalla, Asif T.;
    • Shiaw-Pyng Yang;
    • Heger, Andreas;
    • Locke, Devin P.;
    • Miethke, Pat;
    • Waters, Paul D.;
    • Veyrunes, Frédéric;
    • Fulton, Lucinda;
    • Fulton, Bob;
    • Graves, Tina;
    • Wallis, John
    Publication type:
    Article

  • Whole-genome sequencing and variant discovery in C. elegans.

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    Nature Methods, 2008, v. 5, n. 2, p. 183, doi. 10.1038/nmeth.1179
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    • Marth, Gabor T.;
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    • Dooling, David;
    • Fewell, Ginger;
    • Barnett, Derek;
    • Fox, Paul;
    • Glasscock, Jarret I.;
    • Hickenbotham, Matthew;
    • Huang, Weichun;
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    • Sander, Sacha N.;
    • Stewart, Donald A.;
    • Stromberg, Michael;
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    • Wylie, Todd;
    • Schedl, Tim;
    • Wilson, Richard K.;
    • Mardis, Elaine R.
    Publication type:
    Article

  • Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans.

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    PLoS Biology, 2007, v. 5, n. 11, p. e310, doi. 10.1371/journal.pbio.0050310
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    • Dewey, Colin N.;
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    Article

  • Principles of Genome Evolution in the Drosophila melanogaster Species Group.

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    PLoS Biology, 2007, v. 5, n. 6, p. e152, doi. 10.1371/journal.pbio.0050152
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    • Roote, John;
    • Ashburner, Michael;
    • Bergman, Casey M.
    Publication type:
    Article

  • Design and implementation of a generalized laboratory data model.

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    BMC Bioinformatics, 2007, v. 8, p. 362, doi. 10.1186/1471-2105-8-362
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    • Dooling, David J.;
    • Chinwalla, Asif T.;
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    • Hepler, Todd;
    • Shin Leong;
    • Carmichael, Lynn;
    • Nhan, Mike;
    • Oberkfell, Benjamin J.;
    • Mardis, Elaine R.;
    • Hillier, LaDeana W.;
    • Wilson, Richard K.
    Publication type:
    Article

  • Application of a superword array in genome assembly.

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    Nucleic Acids Research, 2006, v. 34, n. 1, p. 201, doi. 10.1093/nar/gkj419
    By:
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    • Yang, Shiaw-Pyng;
    • Chinwalla, Asif T.;
    • Hillier, LaDeana W.;
    • Minx, Patrick;
    • Mardis, Elaine R.;
    • Wilson, Richard K.
    Publication type:
    Article

  • Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

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    Nature, 2005, v. 434, n. 7034, p. 724, doi. 10.1038/nature03466
    By:
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    • Graves, Tina A.;
    • Fulton, Robert S.;
    • Fulton, Lucinda A.;
    • Pepin, Kymberlie H.;
    • Minx, Patrick;
    • Wagner-McPherson, Caryn;
    • Layman, Dan;
    • Wylie, Kristine;
    • Sekhon, Mandeep;
    • Becker, Michael C.;
    • Fewell, Ginger A.;
    • Delehaunty, Kimberly D.;
    • Miner, Tracie L.;
    • Nash, William E.;
    • Kremitzki, Colin;
    • Oddy, Lachlan;
    • Du, Hui;
    • Sun, Hui;
    • Bradshaw-Cordum, Holland
    Publication type:
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  • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

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    Nature, 2004, v. 432, n. 7018, p. 695, doi. 10.1038/nature03154
    By:
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    • Miller, Webb;
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    • Hardison, Ross C.;
    • Ponting, Chris P.;
    • Bork, Peer;
    • Burt, David W.;
    • Groenen, Martien A. M.;
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    • Dodgson, Jerry B.;
    • Chinwalla, Asif T.;
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    • Clifton, Sandra W.;
    • Delehaunty, Kimberly D.;
    • Fronick, Catrina;
    • Fulton, Robert S.;
    • Graves, Tina A.;
    • Kremitzki, Colin;
    • Layman, Dan
    Publication type:
    Article

  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.

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    PLoS Biology, 2003, v. 1, n. 11, p. 1, doi. 10.1371/journal.pbio.0000045
    By:
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    • Chen, Nansheng;
    • Chinwalla, Asif;
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    • Clee, Chris;
    • Coghlan, Avril;
    • Coulson, Alan;
    • D'Eustachio, Peter;
    • Fitch, David H. A;
    • Fulton, Lucinda A;
    • Fulton, Robert E;
    • Griffiths-Jones, Sam;
    • Harris, Todd W;
    • Hillier, LaDeana W;
    • Kamath, Ravi;
    • Kuwabara, Patricia E
    Publication type:
    Article

  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.

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    PLoS Biology, 2003, v. 1, n. 2, p. 166, doi. 10.1371/journal.pbio.0000045
    By:
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    • Bao, Zhirong;
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    • Nansheng Chen, Michael R.;
    • Chinwalla, Asif;
    • Clarke, Laura;
    • Clee, Chris;
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    • D'Eustachio, Peter;
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    • Fulton, Lucinda A.;
    • Fulton, Robert E.;
    • Griffiths-Jones, Sam;
    • Harris, Todd W.;
    • Hillier, LaDeana W.;
    • Kamath, Ravi;
    • Kuwabara, Patricia E.
    Publication type:
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  • The DNA sequence of human chromosome 7.

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    Nature, 2003, v. 424, n. 6945, p. 157, doi. 10.1038/nature01782
    By:
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    • Fulton, Robert S.;
    • Fulton, Lucinda A.;
    • Graves, Tina A.;
    • Pepin, Kymberlie H.;
    • Wagner-McPherson, Caryn;
    • Layman, Dan;
    • Maas, Jason;
    • Jaeger, Sara;
    • Walker, Rebecca;
    • Wylie, Kristine;
    • Sekhon, Mandeep;
    • Becker, Michael C.;
    • O'Laughlin, Michelle D.;
    • Schaller, Mark E.;
    • Fewell, Ginger A.;
    • Delehaunty, Kimberly D.;
    • Miner, Tracie L.;
    • Nash, William E.
    Publication type:
    Article

  • The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes.

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    Nature, 2003, v. 423, n. 6942, p. 825, doi. 10.1038/nature01722
    By:
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    • Kuroda-Kawaguchi, Tomoko;
    • Minx, Patrick J.;
    • Cordum, Holland S.;
    • Hillier, LaDeana;
    • Brown, Laura G.;
    • Repping, Sjoerd;
    • Pyntikova, Tatyana;
    • Ali, Johar;
    • Bieri, Tamberlyn;
    • Chinwalla, Asif;
    • Delehaunty, Andrew;
    • Delehaunty, Kim;
    • Du, Hui;
    • Fewell, Ginger;
    • Fulton, Lucinda;
    • Fulton, Robert;
    • Graves, Tina;
    • Hou, Shun-Fang
    Publication type:
    Article

  • A physical map of the human genome.

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    Nature, 2001, v. 409, n. 6822, p. 934
    By:
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    • Marra, Marco;
    • Hillier, LaDeana;
    • Waterston, Robert H.;
    • Chinwalla, Asif;
    • Wallis, John;
    • Sekhon, Mandeep;
    • Wylie, Kristine;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Fulton, Robert;
    • Kucaba, Tamara A.;
    • Wagner-McPherson, Caryn;
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    • Gregory, Simon G.;
    • Humphray, Sean J.;
    • French, Lisa;
    • Evans, Richard S.;
    • Bethel, Graeme;
    • Whittaker, Adam
    Publication type:
    Article

  • High-throughput plasmid DNA purification for 3 cents per sample.

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    Nucleic Acids Research, 1999, v. 27, n. 24, p. e37, doi. 10.1093/nar/27.24.e37
    By:
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    • Hillier, LaDeana W.;
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    Publication type:
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  • A general approach to single-nucleotide polymorphism discovery.

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    Nature Genetics, 1999, v. 23, n. 4, p. 452, doi. 10.1038/70570
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    • Korf, Ian;
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    • Hillier, LaDeana;
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    Publication type:
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  • A map for sequence analysis of the Arabidopsis thaliana genome.

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    Nature Genetics, 1999, v. 22, n. 3, p. 265, doi. 10.1038/10327
    By:
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    • Kucaba, Tamara;
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    • Hillier, LaDeana;
    • Martienssen, Robert;
    • Chinwalla, Asif;
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    • Waterston, Robert
    Publication type:
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  • An encyclopedia of mouse genes.

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    Nature Genetics, 1999, v. 21, n. 2, p. 191, doi. 10.1038/5976
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    • Hillier, LaDeana;
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    Publication type:
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  • Single nucleotide polymorphism hunting in cyberspace.

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    Article