Found: 13

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  • Dengue Outbreak Caused by Multiple Virus Serotypes and Lineages, Colombia, 2023-2024.

    Published in:
    Emerging Infectious Diseases, 2024, v. 30, n. 11, p. 2391, doi. 10.3201/eid3011.241031
    By:
    • Grubaugh, Nathan D.;
    • Torres-Hernández, Daniela;
    • Murillo-Ortiz, Mónica A.;
    • Dávalos, Diana M.;
    • Lopez, Pio;
    • Hurtado, Isabel C.;
    • Breban, Mallery I.;
    • Bourgikos, Ellie;
    • Hill, Verity;
    • López-Medina, Eduardo
    Publication type:
    Article

  • Introduction and Spread of Dengue Virus 3, Florida, USA, May 2022-April 2023.

    Published in:
    Emerging Infectious Diseases, 2024, v. 30, n. 2, p. 376, doi. 10.3201/eid3002.231615
    By:
    • Jones, Forrest K.;
    • Morrison, Andrea M.;
    • Santiago, Gilberto A.;
    • Rysava, Kristyna;
    • Zimler, Rebecca A.;
    • Heberlein, Lea A.;
    • Kopp, Edgar;
    • Saunders, Katharine E.;
    • Baudin, Samantha;
    • Rico, Edhelene;
    • Mejía-Echeverri, Álvaro;
    • Taylor-Salmon, Emma;
    • Hill, Verity;
    • Breban, Mallery I.;
    • Vogels, Chantal B. F.;
    • Grubaugh, Nathan D.;
    • Paul, Lauren M.;
    • Michael, Scott F.;
    • Johansson, Michael A.;
    • Adams, Laura E.
    Publication type:
    Article

  • The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.

    Published in:
    Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac080
    By:
    • Hill, Verity;
    • Plessis, Louis Du;
    • Peacock, Thomas P;
    • Aggarwal, Dinesh;
    • Colquhoun, Rachel;
    • Carabelli, Alesandro M;
    • Ellaby, Nicholas;
    • Gallagher, Eileen;
    • Groves, Natalie;
    • Jackson, Ben;
    • McCrone, J T;
    • O'Toole, Áine;
    • Price, Anna;
    • Sanderson, Theo;
    • Scher, Emily;
    • Southgate, Joel;
    • Volz, Erik;
    • Barclay, Wendy S;
    • Barrett, Jeffrey C;
    • Chand, Meera
    Publication type:
    Article

  • Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool.

    Published in:
    Virus Evolution, 2021, v. 7, n. 2, p. 1, doi. 10.1093/ve/veab064
    By:
    • O'Toole, Áine;
    • Scher, Emily;
    • Underwood, Anthony;
    • Jackson, Ben;
    • Hill, Verity;
    • McCrone, John T;
    • Colquhoun, Rachel;
    • Ruis, Chris;
    • Abu-Dahab, Khalil;
    • Taylor, Ben;
    • Yeats, Corin;
    • Plessis, Louis du;
    • Maloney, Daniel;
    • Medd, Nathan;
    • Attwood, Stephen W;
    • Aanensen, David M;
    • Holmes, Edward C;
    • Pybus, Oliver G;
    • Rambaut, Andrew
    Publication type:
    Article

  • Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27942-w
    By:
    • Aggarwal, Dinesh;
    • Warne, Ben;
    • Jahun, Aminu S.;
    • Hamilton, William L.;
    • Fieldman, Thomas;
    • du Plessis, Louis;
    • Hill, Verity;
    • Blane, Beth;
    • Watkins, Emmeline;
    • Wright, Elizabeth;
    • Hall, Grant;
    • Ludden, Catherine;
    • Myers, Richard;
    • Hosmillo, Myra;
    • Chaudhry, Yasmin;
    • Pinckert, Malte L.;
    • Georgana, Iliana;
    • Izuagbe, Rhys;
    • Leek, Danielle;
    • Nsonwu, Olisaeloka
    Publication type:
    Article

  • Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25985-7
    By:
    • Butera, Yvan;
    • Mukantwari, Enatha;
    • Artesi, Maria;
    • Umuringa, Jeanne d'arc;
    • O'Toole, Áine Niamh;
    • Hill, Verity;
    • Rooke, Stefan;
    • Hong, Samuel Leandro;
    • Dellicour, Simon;
    • Majyambere, Onesphore;
    • Bontems, Sebastien;
    • Boujemla, Bouchra;
    • Quick, Josh;
    • Resende, Paola Cristina;
    • Loman, Nick;
    • Umumararungu, Esperance;
    • Kabanda, Alice;
    • Murindahabi, Marylin Milumbu;
    • Tuyisenge, Patrick;
    • Gashegu, Misbah
    Publication type:
    Article

  • CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.

    Published in:
    2021
    By:
    • Nicholls, Samuel M.;
    • Poplawski, Radoslaw;
    • Bull, Matthew J.;
    • Underwood, Anthony;
    • Chapman, Michael;
    • Abu-Dahab, Khalil;
    • Taylor, Ben;
    • Colquhoun, Rachel M.;
    • Rowe, Will P. M.;
    • Jackson, Ben;
    • Hill, Verity;
    • O'Toole, Áine;
    • Rey, Sara;
    • Southgate, Joel;
    • Amato, Roberto;
    • Livett, Rich;
    • Gonçalves, Sónia;
    • Harrison, Ewan M.;
    • Peacock, Sharon J.;
    • Aanensen, David M.
    Publication type:
    Editorial

  • Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination.

    Published in:
    PLoS Pathogens, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.ppat.1010023
    By:
    • Campbell, Kathryn;
    • Gifford, Robert J.;
    • Singer, Joshua;
    • Hill, Verity;
    • O'Toole, Aine;
    • Rambaut, Andrew;
    • Hampson, Katie;
    • Brunker, Kirstyn
    Publication type:
    Article

  • A new lineage nomenclature to aid genomic surveillance of dengue virus.

    Published in:
    PLoS Biology, 2024, v. 22, n. 9, p. 1, doi. 10.1371/journal.pbio.3002834
    By:
    • Hill, Verity;
    • Cleemput, Sara;
    • Pereira, James Siqueira;
    • Gifford, Robert J.;
    • Fonseca, Vagner;
    • Tegally, Houriiyah;
    • Brito, Anderson F.;
    • Ribeiro, Gabriela;
    • de Souza, Vinicius Carius;
    • Brcko, Isabela Carvalho;
    • Ribeiro, Igor Santana;
    • De Lima, Iago Trezena Tavares;
    • Slavov, Svetoslav Nanev;
    • Sampaio, Sandra Coccuzzo;
    • Elias, Maria Carolina;
    • Tran, Vi Thuy;
    • Kien, Duong Thi Hue;
    • Huynh, Tuyen;
    • Yacoub, Sophie;
    • Dieng, Idrissa
    Publication type:
    Article

  • Bayesian Estimation of Past Population Dynamics in BEAST 1.10 Using the Skygrid Coalescent Model.

    Published in:
    Molecular Biology & Evolution, 2019, v. 36, n. 11, p. 2620, doi. 10.1093/molbev/msz172
    By:
    • Hill, Verity;
    • Baele, Guy
    Publication type:
    Article

  • DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus.

    Published in:
    BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10350-x
    By:
    • Vogels, Chantal B. F.;
    • Hill, Verity;
    • Breban, Mallery I.;
    • Chaguza, Chrispin;
    • Paul, Lauren M.;
    • Sodeinde, Afeez;
    • Taylor-Salmon, Emma;
    • Ott, Isabel M.;
    • Petrone, Mary E.;
    • Dijk, Dennis;
    • Jonges, Marcel;
    • Welkers, Matthijs R. A.;
    • Locksmith, Timothy;
    • Dong, Yibo;
    • Tarigopula, Namratha;
    • Tekin, Omer;
    • Schmedes, Sarah;
    • Bunch, Sylvia;
    • Cano, Natalia;
    • Jaber, Rayah
    Publication type:
    Article

  • Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-18877-9
    By:
    • Lemey, Philippe;
    • Hong, Samuel L.;
    • Hill, Verity;
    • Baele, Guy;
    • Poletto, Chiara;
    • Colizza, Vittoria;
    • O'Toole, Áine;
    • McCrone, John T.;
    • Andersen, Kristian G.;
    • Worobey, Michael;
    • Nelson, Martha I.;
    • Rambaut, Andrew;
    • Suchard, Marc A.
    Publication type:
    Article

  • Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City–from Alpha to Omicron.

    Published in:
    PLoS Pathogens, 2023, v. 18, n. 4, p. 1, doi. 10.1371/journal.ppat.1011348
    By:
    • Dellicour, Simon;
    • Hong, Samuel L.;
    • Hill, Verity;
    • Dimartino, Dacia;
    • Marier, Christian;
    • Zappile, Paul;
    • Harkins, Gordon W.;
    • Lemey, Philippe;
    • Baele, Guy;
    • Duerr, Ralf;
    • Heguy, Adriana
    Publication type:
    Article