Works by Hibbs, Matthew

Results: 24

Interpreting the Basin Closure Law in Montana: The Permissibility of "Prestream Capture.".

Published in:

Public Land & Resources Law Review, 2008, v. 29, p. 195

By:

Hibbs, Matthew

Publication type:

Article

Maternal diabetes and obesity influence the fetal epigenome in a largely Hispanic population.

Published in:

Clinical Epigenetics, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13148-020-0824-9

By:

Rizzo, Heather E.;
Escaname, Elia N.;
Alana, Nicholas B.;
Lavender, Elizabeth;
Gelfond, Jonathan;
Fernandez, Roman;
Hibbs, Matthew A.;
King, Jonathan M.;
Carr, Nicholas R.;
Blanco, Cynthia L.

Publication type:

Article

Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 9, p. 1, doi. 10.1371/journal.pcbi.1002694

By:

Guan, Yuanfang;
Gorenshteyn, Dmitriy;
Burmeister, Margit;
Wong, Aaron K.;
Schimenti, John C.;
Handel, Mary Ann;
Bult, Carol J.;
Hibbs, Matthew A.;
Troyanskaya, Olga G.

Publication type:

Article

Functional Genomics Complements Quantitative Genetics in Identifying Disease-Gene Associations.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000991

By:

Yuanfang Guan;
Ackert-Bicknell, Cheryl L.;
Kell, Braden;
Troyanskaya, Olga G.;
Hibbs, Matthew A.

Publication type:

Article

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000322

By:

Hibbs, Matthew A.;
Myers, Chad L.;
Huttenhower, Curtis;
Hess, David C.;
Kai Li;
Caudy, Amy A.;
Troyanskaya, Olga G.

Publication type:

Article

RNA-Seq Alignment to Individualized Genomes Improves Transcript Abundance Estimates in Multiparent Populations.

Published in:

Genetics, 2014, v. 198, n. 1, p. 59, doi. 10.1534/genetics.114.165886

By:

Munger, Steven C.;
Raghupathy, Narayanan;
Kwangbom Choi;
Simons, Allen K.;
Gatti, Daniel M.;
Hinerfeld, Douglas A.;
Svenson, Karen L.;
Keller, Mark P.;
Attie, Alan D.;
Hibbs, Matthew A.;
Graber, Joel H.;
Chesler, Elissa J.;
Churchill, Gary A.

Publication type:

Article

Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage.

Published in:

Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0024-6

By:

Walker, Michael;
Billings, Timothy;
Baker, Christopher L.;
Powers, Natalie;
Hui Tian;
Saxl, Ruth L.;
Kwangbom Choi;
Hibbs, Matthew A.;
Carter, Gregory W.;
Handel, Mary Ann;
Paigen, Kenneth;
Petkov, Petko M.

Publication type:

Article

Homology cluster differential expression analysis for interspecies mRNA-Seq experiments.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2015, v. 14, n. 6, p. 507, doi. 10.1515/sagmb-2014-0056

By:

Gelfond, Jonathan A.;
Ibrahim, Joseph G.;
Chen, Ming-Hui;
Sun, Wei;
Lewis, Kaitlyn;
Kinahan, Sean;
Hibbs, Matthew;
Buffenstein, Rochelle

Publication type:

Article

GStatSim V1.0: a Python package for geostatistical interpolation and conditional simulation.

Published in:

Geoscientific Model Development, 2023, v. 16, n. 13, p. 3765, doi. 10.5194/gmd-16-3765-2023

By:

MacKie, Emma J.;
Field, Michael;
Wang, Lijing;
Yin, Zhen;
Schoedl, Nathan;
Hibbs, Matthew;
Zhang, Allan

Publication type:

Article

Quantitative analysis of fitness and genetic interactions in yeast on a genome scale.

Published in:

Nature Methods, 2010, v. 7, n. 12, p. 1017, doi. 10.1038/nmeth.1534

By:

Baryshnikova, Anastasia;
Costanzo, Michael;
Yungil Kim;
Huiming Ding;
Judice Koh;
Kiana Toufighi;
Ji-Young Youn;
Jiongwen Ou;
San Luis, Bryan-Joseph;
Bandyopadhyay, Sunayan;
Hibbs, Matthew;
Hess, David;
Gingras, Anne-Claude;
Bader, Gary D.;
Troyanskaya, Olga G.;
Brown, Grant W.;
Andrews, Brenda;
Boone, Charles;
Myers, Chad L.

Publication type:

Article

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2404, doi. 10.1093/bioinformatics/btp397

By:

Huttenhower, Curtis;
Hibbs, Matthew A.;
Myers, Chad L.;
Caudy, Amy A.;
Hess, David C.;
Troyanskaya, Olga G.

Publication type:

Article

Exploring the functional landscape of gene expression: directed search of large microarray compendia.

Published in:

Bioinformatics, 2007, v. 23, n. 20, p. 2692, doi. 10.1093/bioinformatics/btm403

By:

Hibbs, Matthew A.;
Hess, David C.;
Myers, Chad L.;
Huttenhower, Curtis;
Kai Li;
Troyanskaya, Olga G.

Publication type:

Article

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 250, doi. 10.1186/1471-2105-8-250

By:

Huttenhower, Curtis;
Flamholz, Avi I;
Landis, Jessica N;
Sahi, Sauhard;
Myers, Chad L;
Olszewski, Kellen L;
Hibbs, Matthew A;
Siemers, Nathan O;
Troyanskaya, Olga G;
Coller, Hilary A

Publication type:

Article

Cell-Type-Specific Predictive Network Yields Novel Insights into Mouse Embryonic Stem Cell Self-Renewal and Cell Fate.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056810

By:

Dowell, Karen G.;
Simons, Allen K.;
Wang, Zack Z.;
Yun, Kyuson;
Hibbs, Matthew A.

Publication type:

Article

Natural genetic variation alters Alzheimer's‐related gene expression modules in mice: Development of new models and analysis methods/novel assays and technologies.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2020, v. 16, n. 11, p. 1, doi. 10.1002/alz.042019

By:

Wells, Ann E.;
Raghupathy, Narayanan;
Robledo, Raymond F.;
Gatti, Daniel M.;
Munger, Steven C.;
Phillips, Charles;
Ndukum, Juliet;
Wilcox, Troy;
Graber, Joel;
Hibbs, Matthew;
Langston, Michael A.;
Churchill, Gary A.;
Carter, Gregory W.;
Chesler, Elissa J

Publication type:

Article

Regulatory complexity revealed by integrated cytological and RNA-seq analyses of meiotic substages in mouse spermatocytes.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2865-1

By:

Ball, Robyn L.;
Yasuhiro Fujiwara;
Fengyun Sun;
Jianjun Hu;
Hibbs, Matthew A.;
Handel, Mary Ann;
Carter, Gregory W.

Publication type:

Article

Phenotypic Dissection of Bone Mineral Density Reveals Skeletal Site Specificity and Facilitates the Identification of Novel Loci in the Genetic Regulation of Bone Mass Attainment.

Published in:

PLoS Genetics, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pgen.1004423

By:

Kemp, John P.;
Medina-Gomez, Carolina;
Estrada, Karol;
St Pourcain, Beate;
Heppe, Denise H. M.;
Warrington, Nicole M.;
Oei, Ling;
Ring, Susan M.;
Kruithof, Claudia J.;
Timpson, Nicholas J.;
Wolber, Lisa E.;
Reppe, Sjur;
Gautvik, Kaare;
Grundberg, Elin;
Ge, Bing;
van der Eerden, Bram;
van de Peppel, Jeroen;
Hibbs, Matthew A.;
Ackert-Bicknell, Cheryl L.;
Choi, Kwangbom

Publication type:

Article

Novel Insights into Embryonic Stem Cell Self-Renewal Revealed Through Comparative Human and Mouse Systems Biology Networks.

Published in:

Stem Cells, 2014, v. 32, n. 5, p. 1161, doi. 10.1002/stem.1612

By:

Dowell, Karen G.;
Simons, Allen K.;
Bai, Hao;
Kell, Braden;
Wang, Zack Z.;
Yun, Kyuson;
Hibbs, Matthew A.

Publication type:

Article

Genome-Wide Analysis of N1ICD/RBPJ Targets In Vivo Reveals Direct Transcriptional Regulation of Wnt, SHH, and Hippo Pathway Effectors by Notch1.

Published in:

Stem Cells, 2012, v. 30, n. 4, p. 741, doi. 10.1002/stem.1030

By:

Li, Yaochen;
Hibbs, Matthew Aaron;
Gard, Ashley Lauren;
Shylo, Natalia Aliakseeuna;
Yun, Kyuson

Publication type:

Article

Unraveling the message: insights into comparative genomics of the naked mole-rat.

Published in:

Mammalian Genome, 2016, v. 27, n. 7/8, p. 259, doi. 10.1007/s00335-016-9648-5

By:

Lewis, Kaitlyn;
Soifer, Ilya;
Melamud, Eugene;
Roy, Margaret;
McIsaac, R.;
Hibbs, Matthew;
Buffenstein, Rochelle

Publication type:

Article

Visualization of omics data for systems biology.

Published in:

Nature Methods, 2010, v. 7, n. 3s, p. S56, doi. 10.1038/nmeth.1436

By:

Gehlenborg, Nils;
O'Donoghue, Seán I.;
Baliga, Nitin S.;
Goesmann, Alexander;
Hibbs, Matthew A.;
Kitano, Hiroaki;
Kohlbacher, Oliver;
Neuweger, Heiko;
Schneider, Reinhard;
Tenenbaum, Dan;
Gavin, Anne-Claude

Publication type:

Article

Visualization methods for statistical analysis of microarray clusters.

Published in:

BMC Bioinformatics, 2005, v. 6, p. 115, doi. 10.1186/1471-2105-6-115

By:

Hibbs, Matthew A;
Dirksen, Nathaniel C.;
Kai Li;
Troyanskaya, Olga G.

Publication type:

Article

Computationally Driven, Quantitative Experiments Discover Genes Required for Mitochondrial Biogenesis.

Published in:

PLoS Genetics, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pgen.1000407

By:

Hess, David C.;
Myers, Chad L.;
Huttenhower, Curtis;
Hibbs, Matthew A.;
Hayes, Alicia P.;
Paw, Jadine;
Clore, John J.;
Mendoza, Rosa M.;
Luis, Bryan San;
Nislow, Corey;
Giaever, Guri;
Costanzo, Michael;
Troyanskaya, Olga G.;
Caudy, Amy A.

Publication type:

Article

Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma.

Published in:

2011

By:

Howell, Gareth R.;
Macalinao, Danilo G.;
Sousa, Gregory L.;
Walden, Michael;
Soto, Ileana;
Kneeland, Stephen C.;
Barbay, Jessica M.;
King, Benjamin L.;
Marchant, Jeffrey K.;
Hibbs, Matthew;
Stevens, Beth;
Barres, Ben A.;
Clark, Abbot F.;
Libby, Richard T.;
John, Simon W. M.

Publication type:

journal article