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Multi-Omics integration can be used to rescue metabolic information for some of the dark region of the Pseudomonas putida proteome.
- Published in:
- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10082-y
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- Article
Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: 1 Effects of LC-MS Acquisition and Data Analysis Procedures.
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- Biogeosciences Discussions, 2024, p. 1, doi. 10.5194/egusphere-2023-3148
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- Article
Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination.
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- Plant Direct, 2023, v. 7, n. 11, p. 1, doi. 10.1002/pld3.546
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- Article
Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza Colonization.
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- Cells (2073-4409), 2023, v. 12, n. 7, p. 1082, doi. 10.3390/cells12071082
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- Article
Proteomics reveals pathways linked to septoria canker resistance and susceptibility in Populus trichocarpa.
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- Frontiers in Analytical Science, 2022, p. 1, doi. 10.3389/frans.2022.1020111
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- Article
Antibiotic resistance and host immune system-induced metal bactericidal control are key factors for microbial persistence in the developing human preterm infant gut microbiome.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.958638
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- Article
The Promises, Challenges, and Opportunities of Omics for Studying the Plant Holobiont.
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- Microorganisms, 2022, v. 10, n. 10, p. 2013, doi. 10.3390/microorganisms10102013
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- Article
Experimental validation that human microbiome phages use alternative genetic coding.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32979-6
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- Article
Multi-omic characterization of bifunctional peroxidase 4-coumarate 3-hydroxylase knockdown in Brachypodium distachyon provides insights into lignin modificationassociated pleiotropic effects.
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- Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.908649
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- Article
Proteomic and metabolic disturbances in lignin-modified Brachypodium distachyon.
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- Plant Cell, 2022, v. 34, n. 9, p. 3339, doi. 10.1093/plcell/koac171
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- Article
Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solids.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31433-x
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- Article
A Surface Exposed, Two-Domain Lipoprotein Cargo of a Type XI Secretion System Promotes Colonization of Host Intestinal Epithelia Expressing Glycans.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.800366
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- Article
Identification and widespread environmental distribution of a gene cassette implicated in anaerobic dichloromethane degradation.
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- Global Change Biology, 2022, v. 28, n. 7, p. 2396, doi. 10.1111/gcb.16068
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- Article
In silico evaluation of a targeted metaproteomics strategy for broad screening of cellulolytic enzyme capacities in anaerobic microbiome bioreactors.
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- Biotechnology for Biofuels & Bioproducts, 2022, v. 16, n. 1, p. 1, doi. 10.1186/s13068-022-02125-x
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- Article
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.
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- 2021
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- Publication type:
- Letter
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27542-8
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- Article
Towards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor‐like kinase.
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- Plant Biotechnology Journal, 2021, v. 19, n. 12, p. 2454, doi. 10.1111/pbi.13671
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- Article
Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance.
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- BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-021-02370-4
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- Article
Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01085-y
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- Article
Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01057-2
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- Article
Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets.
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- Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-021-01964-4
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- Article
Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.64478
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- Article
Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes.
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- PLoS Pathogens, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.ppat.1009245
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- Publication type:
- Article
Coculture with hemicellulose-fermenting microbes reverses inhibition of corn fiber solubilization by Clostridium thermocellum at elevated solids loadings.
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- Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01867-w
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- Article
Molecular Remodeling in Populus PdKOR RNAi Roots Profiled Using LC‐MS/MS Proteomics.
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- Proteomics, 2020, v. 20, n. 24, p. 1, doi. 10.1002/pmic.202000067
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- Article
A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71672-w
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- Article
Structural and Proteomic Studies of the Aureococcus anophagefferens Virus Demonstrate a Global Distribution of Virus-Encoded Carbohydrate Processing.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.02047
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- Article
Impact of Fatty-Acid Labeling of Bacillus subtilis Membranes on the Cellular Lipidome and Proteome.
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- Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.00914
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- Article
Gene targets for engineering osmotolerance in Caldicellulosiruptor bescii.
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- Biotechnology for Biofuels, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13068-020-01690-3
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- Publication type:
- Article
Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using <sup>13</sup>CO<sub>2</sub> and <sup>13</sup>C-Methanol.
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- Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02706
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- Article
Integrated Proteomics and Lipidomics Reveal That the Swarming Motility of Paenibacillus polymyxa Is Characterized by Phospholipid Modification, Surfactant Deployment, and Flagellar Specialization Relative to Swimming Motility.
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- Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02594
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- Article
Scavenging organic nitrogen and remodelling lipid metabolism are key survival strategies adopted by the endophytic fungi, Serendipita vermifera and Serendipita bescii to alleviate nitrogen and phosphorous starvation in vitro.
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- Environmental Microbiology Reports, 2019, v. 11, n. 4, p. 548, doi. 10.1111/1758-2229.12757
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- Article
Targeted detection of Dehalococcoides mccartyi microbial protein biomarkers as indicators of reductive dechlorination activity in contaminated groundwater.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46901-6
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- Article
One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation.
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- PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0211310
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- Article
Correction to: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave.
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- 2019
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- Correction Notice
Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn's remission patients despite temporal variations in microbial taxa, genomes, and proteomes.
- Published in:
- Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0631-8
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- Publication type:
- Article
Transcriptomic and proteomic changes from medium supplementation and strain evolution in high-yielding Clostridium thermocellum strains.
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- Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 11, p. 1007, doi. 10.1007/s10295-018-2073-x
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- Publication type:
- Article
Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02129
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- Publication type:
- Article
Quantitative Proteomic Analysis of Biological Processes and Responses of the Bacterium Desulfovibrio desulfuricans ND132 upon Deletion of Its Mercury Methylation Genes.
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- Proteomics, 2018, v. 18, n. 17, p. 1, doi. 10.1002/pmic.201700479
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- Publication type:
- Article
Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4964-7
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- Publication type:
- Article
Author Correction: Maternal consumption of fish oil programs reduced adiposity in broiler chicks.
- Published in:
- 2018
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- Publication type:
- Correction Notice
The diversity and specificity of the extracellular proteome in the cellulolytic bacterium <italic>Caldicellulosiruptor bescii</italic> is driven by the nature of the cellulosic growth substrate.
- Published in:
- Biotechnology for Biofuels, 2018, v. 11, p. 1, doi. 10.1186/s13068-018-1076-1
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- Publication type:
- Article
Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves.
- Published in:
- PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0190019
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- Publication type:
- Article
Identification of peptide‐binding sites within BSA using rapid, laser‐induced covalent cross‐linking combined with high‐performance mass spectrometry.
- Published in:
- Journal of Molecular Recognition, 2018, v. 31, n. 2, p. 1, doi. 10.1002/jmr.2680
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- Publication type:
- Article
Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals.
- Published in:
- Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2017.02210
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- Publication type:
- Article
Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria.
- Published in:
- Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0968-9
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- Publication type:
- Article
Mechanisms of subzero growth in the cryophile Planococcus halocryophilus determined through proteomic analysis.
- Published in:
- Environmental Microbiology, 2017, v. 19, n. 11, p. 4460, doi. 10.1111/1462-2920.13893
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- Article
Maternal consumption of fish oil programs reduced adiposity in broiler chicks.
- Published in:
- Scientific Reports, 2017, v. 7, n. 1, p. 1, doi. 10.1038/s41598-017-13519-5
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- Publication type:
- Article
Corrigendum: Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum.
- Published in:
- Scientific Reports, 2017, p. 46875, doi. 10.1038/srep46875
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- Publication type:
- Article
Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals speciesspecific metabolic shifts and variabilities during early life.
- Published in:
- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0290-6
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- Publication type:
- Article