Works matching AU Herrmann, Carl

Results: 40

Radiation Belt Storm Probes-Observatory and Environments.

Published in:

Space Science Reviews, 2013, v. 179, n. 1-4, p. 59, doi. 10.1007/s11214-012-9949-2

By:

Kirby, Karen;
Artis, David;
Bushman, Stewart;
Butler, Michael;
Conde, Rich;
Cooper, Stan;
Fretz, Kristen;
Herrmann, Carl;
Hill, Adrian;
Kelley, Jeff;
Maurer, Richard;
Nichols, Richard;
Ottman, Geffrey;
Reid, Mark;
Rogers, Gabe;
Srinivasan, Dipak;
Troll, John;
Williams, Bruce

Publication type:

Article

LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.

Published in:

Bioinformatics, 2016, v. 32, n. 7, p. 1091, doi. 10.1093/bioinformatics/btv705

By:

Seyres, Denis;
Darbo, Elodie;
Perrin, Laurent;
Herrmann, Carl;
González, Aitor

Publication type:

Article

SimCT: a generic tool to visualize ontology-based relationships for biological objects.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3197, doi. 10.1093/bioinformatics/btp553

By:

Herrmann, Carl;
Bérard, Sèverine;
Tichit, Laurent

Publication type:

Article

A network of transcriptomic signatures identifies novel comorbidity mechanisms between schizophrenia and somatic disorders.

Published in:

Discover Mental Health, 2024, v. 4, n. 1, p. 1, doi. 10.1007/s44192-024-00063-8

By:

Zhang, Youcheng;
Bharadhwaj, Vinay S.;
Kodamullil, Alpha T.;
Herrmann, Carl

Publication type:

Article

Abnormalities of tracking behavior in Parkinson's disease.

Published in:

Movement Disorders, 1995, v. 10, n. 3, p. 267, doi. 10.1002/mds.870100306

By:

Hufschmidt, Andreas;
Lücking, Carl-Herrmann

Publication type:

Article

Impact of cancer mutational signatures on transcription factor motifs in the human genome.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-019-0525-4

By:

Yiu Chan, Calvin Wing;
Gu, Zuguang;
Bieg, Matthias;
Eils, Roland;
Herrmann, Carl

Publication type:

Article

Variability of frequency and phase between antagonistic muscle pairs in pathological human tremors.

Published in:

2001

By:

Lauk, Michael;
Timmer, Jens;
Guschlbauer, Brigitte;
Hellwig, Bernhard;
Lücking, Carl-Herrmann;
Lauk, M;
Timmer, J;
Guschlbauer, B;
Hellwig, B;
Lücking, C H

Publication type:

journal article

The endogenous cellular protease inhibitor SPINT2 controls SARS-CoV-2 viral infection and is associated to disease severity.

Published in:

PLoS Pathogens, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.ppat.1009687

By:

Ramirez Alvarez, Carlos;
Kee, Carmon;
Sharma, Ashwini Kumar;
Thomas, Leonie;
Schmidt, Florian I.;
Stanifer, Megan L.;
Boulant, Steeve;
Herrmann, Carl

Publication type:

Article

PrOnto database : GO term functional dissimilarity inferred from biological data.

Published in:

Frontiers in Genetics, 2015, p. 1, doi. 10.3389/fgene.2015.00200

By:

Chapple, Charles E.;
Herrmann, Carl;
Brun, Christine

Publication type:

Article

Single‐cell analyses reveal SARS‐CoV‐2 interference with intrinsic immune response in the human gut.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 4, p. 1, doi. 10.15252/msb.202110232

By:

Triana, Sergio;
Metz‐Zumaran, Camila;
Ramirez, Carlos;
Kee, Carmon;
Doldan, Patricio;
Shahraz, Mohammed;
Schraivogel, Daniel;
Gschwind, Andreas R;
Sharma, Ashwini K;
Steinmetz, Lars M;
Herrmann, Carl;
Alexandrov, Theodore;
Boulant, Steeve;
Stanifer, Megan L

Publication type:

Article

Accelerated Simultaneous T 2 and T 2 * Mapping of Multiple Sclerosis Lesions Using Compressed Sensing Reconstruction of Radial RARE-EPI MRI.

Published in:

Tomography: A Journal for Imaging Research, 2023, v. 9, n. 1, p. 299, doi. 10.3390/tomography9010024

By:

Herrmann, Carl J. J.;
Starke, Ludger;
Millward, Jason M.;
Kuchling, Joseph;
Paul, Friedemann;
Niendorf, Thoralf

Publication type:

Article

Kalirin-RAC controls nucleokinetic migration in ADRN-type neuroblastoma.

Published in:

Life Science Alliance, 2021, v. 4, n. 5, p. 1, doi. 10.26508/lsa.201900332

By:

Afanasyeva, Elena A.;
Gartlgruber, Moritz;
Ryl, Tatsiana;
Decaesteker, Bieke;
Denecker, Geertrui;
Mönke, Gregor;
Toprak, Umut H.;
Florez, Andres;
Torkov, Alica;
Dreidax, Daniel;
Herrmann, Carl;
Okonechnikov, Konstantin;
Ek, Sara;
Sharma, Ashwini Kumar;
Sagulenko, Vitaliya;
Speleman, Frank;
Henrich, Kai-Oliver;
Westermann, Frank

Publication type:

Article

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06699-9

By:

Decaesteker, Bieke;
Denecker, Geertrui;
Van Neste, Christophe;
Dolman, Emmy M.;
Van Loocke, Wouter;
Gartlgruber, Moritz;
Nunes, Carolina;
De Vloed, Fanny;
Depuydt, Pauline;
Verboom, Karen;
Rombaut, Dries;
Loontiens, Siebe;
De Wyn, Jolien;
Kholosy, Waleed M.;
Koopmans, Bianca;
Essing, Anke H. W.;
Herrmann, Carl;
Dreidax, Daniel;
Durinck, Kaat;
Deforce, Dieter

Publication type:

Article

Global hypomethylation in childhood asthma identified by genome‐wide DNA‐methylation sequencing preferentially affects enhancer regions.

Published in:

Allergy, 2023, v. 78, n. 6, p. 1489, doi. 10.1111/all.15658

By:

Thürmann, Loreen;
Klös, Matthias;
Mackowiak, Sebastian D.;
Bieg, Matthias;
Bauer, Tobias;
Ishaque, Naveed;
Messingschlager, Marey;
Herrmann, Carl;
Röder, Stefan;
Bauer, Mario;
Schäuble, Sascha;
Faessler, Erik;
Hahn, Udo;
Weichenhan, Dieter;
Mücke, Oliver;
Plass, Christoph;
Borte, Michael;
von Mutius, Erika;
Stangl, Gabriele I.;
Lauener, Roger

Publication type:

Article

Metagenome Annotation Using a Distributed Grid of Undergraduate Students.

Published in:

PLoS Biology, 2008, v. 6, n. 11, p. e296, doi. 10.1371/journal.pbio.0060296

By:

Hingamp, Pascal;
Brochier, Cline;
Talla, Emmanuel;
Gautheret, Daniel;
Thieffry, Denis;
Herrmann, Carl

Publication type:

Article

DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic data.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae136

By:

Karkar, Slim;
Sharma, Ashwini;
Herrmann, Carl;
Blum, Yuna;
Richard, Magali

Publication type:

Article

A comprehensive comparison of tools for differential ChIP-seq analysis.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 6, p. 953, doi. 10.1093/bib/bbv110

By:

Steinhauser, Sebastian;
Kurzawa, Nils;
Eils, Roland;
Herrmann, Carl

Publication type:

Article

Integrative Ranking of Enhancer Networks Facilitates the Discovery of Epigenetic Markers in Cancer.

Published in:

Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.664654

By:

Wang, Qi;
Wu, Yonghe;
Vorberg, Tim;
Eils, Roland;
Herrmann, Carl

Publication type:

Article

Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21247-8

By:

Hartlieb, Sabine A.;
Sieverling, Lina;
Nadler-Holly, Michal;
Ziehm, Matthias;
Toprak, Umut H.;
Herrmann, Carl;
Ishaque, Naveed;
Okonechnikov, Konstantin;
Gartlgruber, Moritz;
Park, Young-Gyu;
Wecht, Elisa Maria;
Savelyeva, Larissa;
Henrich, Kai-Oliver;
Rosswog, Carolina;
Fischer, Matthias;
Hero, Barbara;
Jones, David T. W.;
Pfaff, Elke;
Witt, Olaf;
Pfister, Stefan M.

Publication type:

Article

THE N=2 VECTOR-TENSOR MULTIPLET, CENTRAL CHARGE SUPERSPACE, AND CHERN-SIMONS COUPLINGS.

Published in:

International Journal of Modern Physics A: Particles & Fields; Gravitation; Cosmology; Nuclear Physics, 1998, v. 13, n. 11, p. 1805, doi. 10.1142/S0217751X98000792

By:

GRIMM, RICHARD;
HASLER, MAXIMILIAN;
HERRMANN, CARL

Publication type:

Article

Identification of DNA methylation changes at cis -regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing.

Published in:

Cell Cycle, 2014, v. 13, n. 22, p. 3476, doi. 10.4161/15384101.2014.973334

By:

Lipka, Daniel B;
Wang, Qi;
Cabezas-Wallscheid, Nina;
Klimmeck, Daniel;
Weichenhan, Dieter;
Herrmann, Carl;
Lier, Amelie;
Brocks, David;
von Paleske, Lisa;
Renders, Simon;
Wünsche, Peer;
Zeisberger, Petra;
Gu, Lei;
Haas, Simon;
Essers, Marieke Ag;
Brors, Benedikt;
Eils, Roland;
Trumpp, Andreas;
Milsom, Michael D;
Plass, Christoph

Publication type:

Article

High-Fidelity 3D Stray Magnetic Field Mapping of Smartphones to Address Safety Considerations with Active Implantable Electronic Medical Devices.

Published in:

Sensors (14248220), 2023, v. 23, n. 3, p. 1209, doi. 10.3390/s23031209

By:

Saha, Nandita;
Millward, Jason M.;
Herrmann, Carl J. J.;
Rahimi, Faezeh;
Han, Haopeng;
Lacour, Philipp;
Blaschke, Florian;
Niendorf, Thoralf

Publication type:

Article

Identification of cis-regulatory modules encoding temporal dynamics during development.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-534

By:

Potier, Delphine;
Seyres, Denis;
Guichard, Céline;
Iche-Torres, Magali;
Aerts, Stein;
Herrmann, Carl;
Perrin, Laurent

Publication type:

Article

Transcriptional and epigenetic signatures of zygotic genome activation during early drosophila embryogenesis.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-226

By:

Darbo, Elodie;
Herrmann, Carl;
Lecuit, Thomas;
Thieffry, Denis;
van Helden, Jacques

Publication type:

Article

DNA methylation changes during acute COVID-19 are associated with long-term transcriptional dysregulation in patients' airway epithelial cells.

Published in:

EMBO Molecular Medicine, 2025, v. 17, n. 5, p. 923, doi. 10.1038/s44321-025-00215-5

By:

Messingschlager, Marey;
Mackowiak, Sebastian D;
Voelker, Maria Theresa;
Bieg, Matthias;
Loske, Jennifer;
Chua, Robert Lorenz;
Liebig, Johannes;
Lukassen, Sören;
Thürmann, Loreen;
Seegebarth, Anke;
Twardziok, Sven;
Doncevic, Daria;
Herrmann, Carl;
Lorenz, Stephan;
Klages, Sven;
Steinbeis, Fridolin;
Witzenrath, Martin;
Kurth, Florian;
Conrad, Christian;
Sander, Leif E

Publication type:

Article

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state.

Published in:

Nature Communications, 2015, v. 6, n. 4, p. 6683, doi. 10.1038/ncomms7683

By:

Verfaillie, Annelien;
Imrichova, Hana;
Atak, Zeynep Kalender;
Dewaele, Michael;
Rambow, Florian;
Hulselmans, Gert;
Christiaens, Valerie;
Svetlichnyy, Dmitry;
Luciani, Flavie;
Van den Mooter, Laura;
Claerhout, Sofie;
Fiers, Mark;
Journe, Fabrice;
Ghanem, Ghanem-Elias;
Herrmann, Carl;
Halder, Georg;
Marine, Jean-Christophe;
Aerts, Stein

Publication type:

Article

Domain walls in five dimensional supergravity with non-trivial hypermultiplets.

Published in:

Journal of High Energy Physics, 2001, v. 2001, n. 1, p. 011, doi. 10.1088/1126-6708/2001/01/011

By:

Behrndt, Klaus;
Herrmann, Carl;
Louis, Jan;
Thomas, Steven

Publication type:

Article

ShinyButchR: Interactive NMF-based decomposition workflow of genome-scale datasets.

Published in:

Biology Methods & Protocols, 2020, v. 5, n. 1, p. 1, doi. 10.1093/biomethods/bpaa022

By:

Quintero, Andres;
Hübschmann, Daniel;
Kurzawa, Nils;
Steinhauser, Sebastian;
Rentzsch, Philipp;
Krämer, Stephen;
Andresen, Carolin;
Park, Jeongbin;
Eils, Roland;
Schlesner, Matthias;
Herrmann, Carl

Publication type:

Article

Clustering proteins from interaction networks for the prediction of cellular functions.

Published in:

BMC Bioinformatics, 2004, v. 5, p. 95, doi. 10.1186/1471-2105-5-95

By:

Brun, Christine;
Herrmann, Carl;
Guénoche, Alain

Publication type:

Article

Biologically informed variational autoencoders allow predictive modeling of genetic and drug-induced perturbations.

Published in:

Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad387

By:

Doncevic, Daria;
Herrmann, Carl

Publication type:

Article

dsMTL: a computational framework for privacy-preserving, distributed multi-task machine learning.

Published in:

Bioinformatics, 2022, v. 38, n. 21, p. 4919, doi. 10.1093/bioinformatics/btac616

By:

Cao, Han;
Zhang, Youcheng;
Baumbach, Jan;
Burton, Paul R;
Dwyer, Dominic;
Koutsouleris, Nikolaos;
Matschinske, Julian;
Marcon, Yannick;
Rajan, Sivanesan;
Rieg, Thilo;
Ryser-Welch, Patricia;
Späth, Julian;
Consortium, The COMMITMENT;
Herrmann, Carl;
Schwarz, Emanuel

Publication type:

Article

Simultaneous T<sub>2</sub> and T2∗ mapping of multiple sclerosis lesions with radial RARE‐EPI.

Published in:

Magnetic Resonance in Medicine, 2021, v. 86, n. 3, p. 1383, doi. 10.1002/mrm.28811

By:

Herrmann, Carl J. J.;
Els, Antje;
Boehmert, Laura;
Periquito, Joao;
Eigentler, Thomas Wilhelm;
Millward, Jason M.;
Waiczies, Sonia;
Kuchling, Joseph;
Paul, Friedemann;
Niendorf, Thoralf

Publication type:

Article

Extended Gauged Supergravities and Holography.

Published in:

Fortschritte der Physik / Progress of Physics, 2001, v. 49, n. 4-6, p. 535, doi. 10.1002/1521-3978(200105)49:4/6<535::AID-PROP535>3.0.CO;2-I

By:

Herrmann, Carl

Publication type:

Article

Quantum Corrections in the Hypermultiplet Moduli Space.

Published in:

Fortschritte der Physik / Progress of Physics, 2000, v. 48, n. 1-3, p. 119, doi. 10.1002/(SICI)1521-3978(20001)48:1/3<119::AID-PROP119>3.0.CO;2-#

By:

Günther, Holger;
Herrmann, Carl;
Louis, Jan

Publication type:

Article

Single-nucleus chromatin accessibility reveals intratumoral epigenetic heterogeneity in IDH1 mutant gliomas.

Published in:

Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0851-y

By:

Al-Ali, Ruslan;
Bauer, Katharina;
Park, Jong-Whi;
Al Abdulla, Ruba;
Fermi, Valentina;
von Deimling, Andreas;
Herold-Mende, Christel;
Mallm, Jan-Philipp;
Herrmann, Carl;
Wick, Wolfgang;
Turcan, Şevin

Publication type:

Article

RSAT 2015: Regulatory Sequence Analysis Tools.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W50, doi. 10.1093/nar/gkv362

By:

Medina-Rivera, Alejandra;
Defrance, Matthieu;
Sand, Olivier;
Herrmann, Carl;
Castro-Mondragon, Jaime A.;
Delerce, Jeremy;
Jaeger, Sébastien;
Blanchet, Christophe;
Vincens, Pierre;
Caron, Christophe;
Staines, Daniel M.;
Contreras-Moreira, Bruno;
Artufel, Marie;
Charbonnier-Khamvongsa, Lucie;
Hernandez, Céline;
Thieffry, Denis;
Thomas-Chollier, Morgane;
van Helden, Jacques

Publication type:

Article

MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W547, doi. 10.1093/nar/gkv417

By:

Nolte, Nicholas;
Kurzawa, Nils;
Eils, Roland;
Herrmann, Carl

Publication type:

Article

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e114, doi. 10.1093/nar/gks543

By:

Herrmann, Carl;
Van de Sande, Bram;
Potier, Delphine;
Aerts, Stein

Publication type:

Article

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 4, p. e31, doi. 10.1093/nar/gkr1104

By:

Thomas-Chollier, Morgane;
Herrmann, Carl;
Defrance, Matthieu;
Sand, Olivier;
Thieffry, Denis;
van Helden, Jacques

Publication type:

Article

RSAT 2011: regulatory sequence analysis tools.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W86, doi. 10.1093/nar/gkr377

By:

Thomas-Chollier, Morgane;
Defrance, Matthieu;
Medina-Rivera, Alejandra;
Sand, Olivier;
Herrmann, Carl;
Thieffry, Denis;
van Helden, Jacques

Publication type:

Article