Works by Hernandez, Alvaro G.

Results: 39

Lasting and Sex-Dependent Impact of Maternal Immune Activation on Molecular Pathways of the Amygdala.

Published in:

Frontiers in Neuroscience, 2020, v. 14, p. N.PAG, doi. 10.3389/fnins.2020.00774

By:

Keever, Marissa R.;
Zhang, Pan;
Bolt, Courtni R.;
Antonson, Adrienne M.;
Rymut, Haley E.;
Caputo, Megan P.;
Houser, Alexandra K.;
Hernandez, Alvaro G.;
Southey, Bruce R.;
Rund, Laurie A.;
Johnson, Rodney W.;
Rodriguez-Zas, Sandra L.

Publication type:

Article

Using Genomics to Shape the Definition of the Agglutinin-Like Sequence (ALS) Family in the Saccharomycetales.

Published in:

Frontiers in Cellular & Infection Microbiology, 2021, v. 11, p. 1, doi. 10.3389/fcimb.2021.794529

By:

Oh, Soon-Hwan;
Schliep, Klaus;
Isenhower, Allyson;
Rodriguez-Bobadilla, Rubi;
Vuong, Vien M.;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Hoyer, Lois L.

Publication type:

Article

Rewritable two-dimensional DNA-based data storage with machine learning reconstruction.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30140-x

By:

Pan, Chao;
Tabatabaei, S. Kasra;
Tabatabaei Yazdi, S. M. Hossein;
Hernandez, Alvaro G.;
Schroeder, Charles M.;
Milenkovic, Olgica

Publication type:

Article

Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5690-5

By:

Ma, Hao;
Martin, Kyle;
Dixon II, Doug;
Hernandez, Alvaro G.;
Weber, Gregory M.

Publication type:

Article

Use of a Candida albicans SC5314 PacBio HiFi reads dataset to close gaps in the reference genome assembly, reveal a subtelomeric gene family, and produce accurate phased allelic sequences.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 1

By:

Hoyer, Lois L.;
Freeman, Brian A.;
Hogan, Elizabeth K.;
Hernandez, Alvaro G.

Publication type:

Article

Use of a Candida albicans SC5314 PacBio HiFi reads dataset to close gaps in the reference genome assembly, reveal a subtelomeric gene family, and produce accurate phased allelic sequences.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, v. 14, p. 1, doi. 10.3389/fcimb.2024.1329438

By:

Hoyer, Lois L.;
Freeman, Brian A.;
Hogan, Elizabeth K.;
Hernandez, Alvaro G.

Publication type:

Article

H alomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir.

Published in:

Environmental Microbiology, 2014, v. 16, n. 6, p. 1695, doi. 10.1111/1462-2920.12325

By:

Dong, Yiran;
Kumar, Charu Gupta;
Chia, Nicholas;
Kim, Pan‐Jun;
Miller, Philip A.;
Price, Nathan D.;
Cann, Isaac K. O.;
Flynn, Theodore M.;
Sanford, Robert A.;
Krapac, Ivan G.;
Locke, Randall A.;
Hong, Pei‐Ying;
Tamaki, Hideyuki;
Liu, Wen‐Tso;
Mackie, Roderick I.;
Hernandez, Alvaro G.;
Wright, Chris L.;
Mikel, Mark A.;
Walker, Jared L.;
Sivaguru, Mayandi

Publication type:

Article

Draft genome assemblies of the avian louse Brueelia nebulosa and its associates using long-read sequencing from an individual specimen.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 4, p. 1, doi. 10.1093/g3journal/jkad030

By:

Sweet, Andrew D.;
Browne, Daniel R.;
Hernandez, Alvaro G.;
Johnson, Kevin P.;
Cameron, Stephen L.

Publication type:

Article

Interacting impact of maternal inflammatory response and stress on the amygdala transcriptome of pigs.

Published in:

G3: Genes | Genomes | Genetics, 2021, v. 11, n. 8, p. 1, doi. 10.1093/g3journal/jkab113

By:

Keever-Keigher, Marissa R.;
Pan Zhang;
Bolt, Courtni R.;
Rymut, Haley E.;
Antonson, Adrienne M.;
Caputo, Megan P.;
Houser, Alexandra K.;
Hernandez, Alvaro G.;
Southey, Bruce R.;
Rund, Laurie A.;
Johnson, Rodney W.;
Rodriguez-Zas, Sandra L.

Publication type:

Article

Association of Common Genetic Variants in the CPSF7 and SDHAF2 Genes with Canine Idiopathic Pulmonary Fibrosis in the West Highland White Terrier.

Published in:

Genes, 2020, v. 11, n. 6, p. 609, doi. 10.3390/genes11060609

By:

Piras, Ignazio S.;
Bleul, Christiane;
Siniard, Ashley;
Wolfe, Amanda J.;
De Both, Matthew D.;
Hernandez, Alvaro G.;
Huentelman, Matthew J.

Publication type:

Article

Cerebellum Transcriptome of Mice Bred for High Voluntary Activity Offers Insights into Locomotor Control and Reward-Dependent Behaviors.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0167095

By:

Caetano-Anollés, Kelsey;
Rhodes, Justin S.;
JrGarland, Theodore;
Perez, Sam D.;
Hernandez, Alvaro G.;
Southey, Bruce R.;
Rodriguez-Zas, Sandra L.

Publication type:

Article

Differential Transcriptome Networks between IDO1-Knockout and Wild-Type Mice in Brain Microglia and Macrophages.

Published in:

PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157727

By:

Gonzalez-Pena, Dianelys;
Nixon, Scott E.;
Southey, Bruce R.;
Lawson, Marcus A.;
McCusker, Robert H.;
Hernandez, Alvaro G.;
Dantzer, Robert;
Kelley, Keith W.;
Rodriguez-Zas, Sandra L.

Publication type:

Article

Microglia Transcriptome Changes in a Model of Depressive Behavior after Immune Challenge.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0150858

By:

Gonzalez-Pena, Dianelys;
Nixon, Scott E.;
O’Connor, Jason C.;
Southey, Bruce R.;
Lawson, Marcus A.;
McCusker, Robert H.;
Borras, Tania;
Machuca, Debbie;
Hernandez, Alvaro G.;
Dantzer, Robert;
Kelley, Keith W.;
Rodriguez-Zas, Sandra L.

Publication type:

Article

Sampling the Waterhemp (Amaranthus tuberculatus) Genome Using Pyrosequencing Technology.

Published in:

Weed Science, 2009, v. 57, n. 5, p. 463, doi. 10.1614/WS-09-021.1

By:

Lee, Ryan M.;
Thimmapuram, Jyothi;
Thinglum, Kate A.;
Gong, George;
Hernandez, Alvaro G.;
Wright, Chris L.;
Kim, Ryan W.;
Mikel, Mark A.;
Tranel, Patrick J.

Publication type:

Article

First Draft Genome Assembly of Root-Lesion Nematode Pratylenchus scribneri Generated Using Long-Read Sequencing.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7311, doi. 10.3390/ijms24087311

By:

Arora, Deepika;
Hernandez, Alvaro G.;
Walden, Kimberly K. O.;
Fields, Christopher J.;
Yan, Guiping

Publication type:

Article

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Published in:

Plant Cell, 2016, v. 28, n. 11, p. 2700, doi. 10.1105/tpc.16.00353

By:

Hirsch, Candice N.;
Hirsch, Cory D.;
Brohammer, Alex B.;
Bowman, Megan J.;
Soifer, Ilya;
Barad, Omer;
Shem-Tov, Doron;
Baruch, Kobi;
Lu, Fei;
Hernandez, Alvaro G.;
Fields, Christopher J.;
Wright, Chris L.;
Koehler, Klaus;
Springer, Nathan M.;
Buckler, Edward;
Buell, C. Robin;
Leon, Natalia de;
Kaeppler, Shawn M.;
Childs, Kevin L.;
Mikel, Mark A.

Publication type:

Article

The 'in vivo lifestyle' of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice.

Published in:

Gut Microbes, 2020, v. 11, n. 3, p. 381, doi. 10.1080/19490976.2019.1618173

By:

Ridlon, Jason M.;
Devendran, Saravanan;
Alves, João Mp;
Doden, Heidi;
Wolf, Patricia G.;
Pereira, Gabriel V.;
Ly, Lindsey;
Volland, Alyssa;
Takei, Hajime;
Nittono, Hiroshi;
Murai, Tsuyoshi;
Kurosawa, Takao;
Chlipala, George E.;
Green, Stefan J.;
Hernandez, Alvaro G.;
Fields, Christopher J.;
Wright, Christy L.;
Kakiyama, Genta;
Cann, Isaac;
Kashyap, Purna

Publication type:

Article

Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243<sup>T</sup>.

Published in:

Gut Microbes, 2018, v. 9, n. 6, p. 523, doi. 10.1080/19490976.2018.1458180

By:

Harris, Spencer C.;
Devendran, Saravanan;
Méndez- García, Celia;
Mythen, Sean M.;
Wright, Chris L.;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Cann, Isaac;
Hylemon, Phillip B.;
Ridlon, Jason M.

Publication type:

Article

Expression of FLOWERING LOCUS C and a frameshift mutation of this gene on chromosome 20 differentiate a summer and winter annual biotype of Camelina sativa.

Published in:

Plant Direct, 2018, v. 2, n. 7, p. 1, doi. 10.1002/pld3.60

By:

Anderson, James V.;
Horvath, David P.;
Doğramaci, Münevver;
Dorn, Kevin M.;
Chao, Wun S.;
Watkin, Erin E.;
Hernandez, Alvaro G.;
Marks, M. David;
Gesch, Russ

Publication type:

Article

Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed‐free period.

Published in:

Plant Direct, 2018, v. 2, n. 4, p. N.PAG, doi. 10.1002/pld3.57

By:

Horvath, David P.;
Bruggeman, Stephanie;
Moriles‐Miller, Janet;
Anderson, James V.;
Dogramaci, Munevver;
Scheffler, Brian E.;
Hernandez, Alvaro G.;
Foley, Michael E.;
Clay, Sharon

Publication type:

Article

Glyphosate’s impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 395, doi. 10.1186/s12864-015-1627-9

By:

Doğramacı, Münevver;
Foley, Michael E.;
Horvath, David P.;
Hernandez, Alvaro G.;
Khetani, Radhika S.;
Fields, Christopher J.;
Keating, Kathleen M.;
Mikel, Mark A.;
Anderson, James V.

Publication type:

Article

Additional Cover.

Published in:

Aging Cell, 2024, v. 23, n. 5, p. 1, doi. 10.1111/acel.14233

By:

Dubey, Sushil K.;
Dubey, Rashmi;
Prajapati, Subhash C.;
Jung, Kyungsik;
Mohan, Kabhilan;
Liu, Xinan;
Roney, Jacob;
Tian, Wenjian;
Abney, Jennifer;
Giarmarco, Michelle M.;
Hernandez, Alvaro G.;
Liu, Jinze;
Kleinman, Mark E.

Publication type:

Article

Histone deficiency and hypoacetylation in the aging retinal pigment epithelium.

Published in:

Aging Cell, 2024, v. 23, n. 5, p. 1, doi. 10.1111/acel.14108

By:

Dubey, Sushil K.;
Dubey, Rashmi;
Prajapati, Subhash C.;
Jung, Kyungsik;
Mohan, Kabhilan;
Liu, Xinan;
Roney, Jacob;
Tian, Wenjian;
Abney, Jennifer;
Giarmarco, Michelle M.;
Hernandez, Alvaro G.;
Liu, Jinze;
Kleinman, Mark E.

Publication type:

Article

High-resolution genetic mapping of maize pan-genome sequence anchors.

Published in:

Nature Communications, 2015, v. 6, n. 4, p. 6914, doi. 10.1038/ncomms7914

By:

Lu, Fei;
Romay, Maria C.;
Glaubitz, Jeffrey C.;
Bradbury, Peter J.;
Elshire, Robert J.;
Wang, Tianyu;
Li, Yu;
Li, Yongxiang;
Semagn, Kassa;
Zhang, Xuecai;
Hernandez, Alvaro G.;
Mikel, Mark A.;
Soifer, Ilya;
Barad, Omer;
Buckler, Edward S.

Publication type:

Article

High‐quality genome assemblies for nine non‐model North American insect species representing six orders (Insecta: Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Neuroptera).

Published in:

Molecular Ecology Resources, 2024, v. 24, n. 8, p. 1, doi. 10.1111/1755-0998.14010

By:

Walden, Kimberly K. O.;
Cao, Yanghui;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Rendon, Gloria A.;
Robinson, Gene E.;
Skinner, Rachel K.;
Stein, Jeffrey A.;
Dietrich, Christopher H.

Publication type:

Article

Characterization of the Candida orthopsilosis agglutinin-like sequence (ALS) genes.

Published in:

PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0215912

By:

Lombardi, Lisa;
Zoppo, Marina;
Rizzato, Cosmeri;
Bottai, Daria;
Hernandez, Alvaro G.;
Hoyer, Lois L.;
Tavanti, Arianna

Publication type:

Article

Analytical workflow profiling gene expression in murine macrophages.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 2, p. -1, doi. 10.1142/S0219720015500109

By:

Nixon, Scott E.;
González-Peña, Dianelys;
Lawson, Marcus A.;
McCusker, Robert H.;
Hernandez, Alvaro G.;
O'Connor, Jason C.;
Dantzer, Robert;
Kelley, Keith W.;
Rodriguez-Zas, Sandra L.

Publication type:

Article

Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout.

Published in:

Frontiers in Genetics, 2015, p. 1, doi. 10.3389/fgene.2015.00298

By:

Sixin Liu;
Vallejo, Roger L.;
Palti, Yniv;
Gao, Guangtu;
Marancik, David P.;
Hernandez, Alvaro G.;
Wiens, Gregory D.;
Houston, Ross;
David, Lior

Publication type:

Article

Whole-body transcriptome of selectively bred, resistant-, control-, and susceptible-line rainbow trout following experimental challenge with Flavobacterium psychrophilum.

Published in:

Frontiers in Genetics, 2015, v. 5, p. 1, doi. 10.3389/fgene.2014.00453

By:

Marancik, David;
Guangtu Gao;
Paneru, Bam;
Hao Ma;
Hernandez, Alvaro G.;
Salem, Mohamed;
Jianbo Yao;
Palti, Yniv;
Wiens, Gregory D.;
Escobar, Hugo Murua;
Nonneman, Dan

Publication type:

Article

RNA editing of microtubule-associated protein tau circular RNAs promotes their translation and tau tangle formation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 22, p. 12979, doi. 10.1093/nar/gkac1129

By:

Welden, Justin Ralph;
Margvelani, Giorgi;
Arizaca Maquera, Karol Andrea;
Gudlavalleti, Bhavani;
Miranda Sardón, Sandra C;
Campos, Alexandre Rosa;
Robil, Noémie;
Lee, Daniel C;
Hernandez, Alvaro G;
Wang, Wang-Xia;
Di, Jing;
de la Grange, Pierre;
Nelson, Peter T;
Stamm, Stefan

Publication type:

Article

Similar Genetic Architecture with Shared and Unique Quantitative Trait Loci for Bacterial Cold Water Disease Resistance in Two Rainbow Trout Breeding Populations.

Published in:

Frontiers in Genetics, 2017, p. 1, doi. 10.3389/fgene.2017.00156

By:

Vallejo, Roger L.;
Sixin Liu;
Guangtu Gao;
Fragomeni, Breno O.;
Hernandez, Alvaro G.;
Leeds, Timothy D.;
Parsons, James E.;
Martin, Kyle E.;
Evenhuis, Jason P.;
Welch, Timothy J.;
Wiens, Gregory D.;
Palti, Yniv

Publication type:

Article

Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models.

Published in:

Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00096

By:

Vallejo, Roger L.;
Leeds, Timothy D.;
Fragomeni, Breno O.;
Gao, Guangtu;
Hernandez, Alvaro G.;
Misztal, Ignacy;
Welch, Timothy J.;
Wiens, Gregory D.;
Palti, Yniv

Publication type:

Article

Plasma Exosomal miRNAs in Persons with and without Alzheimer Disease: Altered Expression and Prospects for Biomarkers.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0139233

By:

Lugli, Giovanni;
Cohen, Aaron M.;
Bennett, David A.;
Shah, Raj C.;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Smalheiser, Neil R.

Publication type:

Article

Detection and Validation of QTL Affecting Bacterial Cold Water Disease Resistance in Rainbow Trout Using Restriction-Site Associated DNA Sequencing.

Published in:

PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0138435

By:

Palti, Yniv;
Vallejo, Roger L.;
Gao, Guangtu;
Liu, Sixin;
Hernandez, Alvaro G.;
IIIRexroad, Caird E.;
Wiens, Gregory D.

Publication type:

Article

Ancient DNA Analysis of Mid-Holocene Individuals from the Northwest Coast of North America Reveals Different Evolutionary Paths for Mitogenomes.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0066948

By:

Cui, Yinqiu;
Lindo, John;
Hughes, Cris E.;
Johnson, Jesse W.;
Hernandez, Alvaro G.;
Kemp, Brian M.;
Ma, Jian;
Cunningham, Ryan;
Petzelt, Barbara;
Mitchell, Joycellyn;
Archer, David;
Cybulski, Jerome S.;
Malhi, Ripan S.

Publication type:

Article

Deep Sequencing of Small RNAs in Tomato for Virus and Viroid Identification and Strain Differentiation.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0037127

By:

Rugang Li;
Gao, Shan;
Hernandez, Alvaro G.;
Wechter, W. Patrick;
Fei, Zhangjun;
Ling, Kai-Shu

Publication type:

Article

Transcriptome Sequencing of the Blind Subterranean Mole Rat, Spalax galili: Utility and Potential for the Discovery of Novel Evolutionary Patterns.

Published in:

PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0021227

By:

Malik, Assaf;
Korol, Abraham;
Hü bner, Sariel;
Hernandez, Alvaro G.;
Thimmapuram, Jyothi;
Ali, Shahjahan;
Glaser, Fabian;
Paz, Arnon;
Avivi, Aaron;
Band, Mark

Publication type:

Article

Development and annotation of perennial Triticeae ESTs and SSR markers.

Published in:

Genome, 2008, v. 51, n. 10, p. 779, doi. 10.1139/G08-062

By:

Bushman, B. Shaun;
Larson, Steve R.;
Mott, Ivan W.;
Cliften, Paul F.;
Wang, Richard R.-C.;
Chatterton, N. Jerry;
Hernandez, Alvaro G.;
Ali, Shahjahan;
Kim, Ryan W.;
Thimmapuram, Jyothi;
Gong, George;
Lei Liu;
Mikel, Mark A.

Publication type:

Article

The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-131

By:

Replogle, Kirstin;
Arnold, Arthur P.;
Ball, Gregory F.;
Band, Mark;
Bensch, Staffan;
Brenowitz, Eliot A.;
Shu Dong;
Drnevich, Jenny;
Ferris, Margaret;
George, Julia M.;
Gong, George;
Hasselquist, Dennis;
Hernandez, Alvaro G.;
Kim, Ryan;
Lewin, Harris A.;
Lei Liu;
Lovell, Peter V.;
Mello, Claudio V.;
Naurin, Sara;
Rodriguez-Zas, Sandra

Publication type:

Article