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Final report of ENGAGE ‐ Establishing Next Generation sequencing Ability for Genomic analysis in Europe.
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- EFSA Supporting Publications, 2018, v. 15, n. 6, p. N.PAG, doi. 10.2903/sp.efsa.2018.EN-1431
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- Article
Prevalence of antimicrobial resistance among bacterial pathogens isolated from cattle in different European countries: 2002-2004.
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- Acta Veterinaria Scandinavica, 2008, v. 50, p. 1, doi. 10.1186/1751-0147-50-28
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- Article
Occurrence of antimicrobial resistance among bacterial pathogens and indicator bacteria in pigs in different European countries from year 2002-2004: the ARBAO-II study.
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- Acta Veterinaria Scandinavica, 2008, v. 50, p. 1, doi. 10.1186/1751-0147-50-19
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- Article
Extended-Spectrum ß-Lactamase-Producing Escherichia coli Among Humans, Beef Cattle, and Abattoir Environments in Nigeria.
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- Frontiers in Cellular & Infection Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fcimb.2022.869314
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- Article
Apramycin treatment affects selection and spread of a multidrug-resistant Escherichia coli strain able to colonize the human gut in the intestinal microbiota of pigs.
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- Veterinary Research, 2016, v. 47, p. 1, doi. 10.1186/s13567-015-0291-z
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- Article
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38902-x
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- Article
Antimicrobial and Genomic Characterization of Salmonella Nigeria from Pigs and Poultry in Ilorin, North-central, Nigeria.
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- Journal of Infection in Developing Countries, 2021, v. 15, n. 12, p. 1899, doi. 10.3855/jidc.15025
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- Article
Evaluating Quality Management and Diagnostics Microbiology Performance Within an International External Quality Assessment (EQA) Program Serving National One Health Sector Reference Laboratories Across Asia: Experience Amid the Coronavirus Disease 2019 (COVID-19) Pandemic
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- Clinical Infectious Diseases, 2023, v. 77, p. S588, doi. 10.1093/cid/ciad569
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- Article
Carbapenemase VCC-1-Producing Vibrio cholerae in Coastal Waters of Germany.
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- 2017
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- journal article
Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages.
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- Emerging Infectious Diseases, 2014, v. 20, n. 9, p. 1481, doi. 10.3201/eid2009.131095
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- Article
International Spread of Multidrug-resistant Salmonella Schwarzengrund in Food Products.
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- Emerging Infectious Diseases, 2007, v. 13, n. 5, p. 726, doi. 10.3201/eid1305.061489
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- Article
Salmonella serovars from humans and other sources in Thailand, 1993-2002.
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- 2004
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- journal article
Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Next‐Generation Sequencing Data.
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- Risk Analysis: An International Journal, 2019, v. 39, n. 6, p. 1397, doi. 10.1111/risa.13239
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- Article
Wastewater Surveillance Detected Carbapenemase Enzymes in Clinically Relevant Gram-Negative Bacteria in Helsinki, Finland; 2011–2012.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.887888
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- Article
Genomic insights into Vibrio cholerae O1 responsible for cholera epidemics in Tanzania between 1993 and 2017.
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- PLoS Neglected Tropical Diseases, 2019, v. 13, n. 12, p. N.PAG, doi. 10.1371/journal.pntd.0007934
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- Article
Rare serovars of non-typhoidal Salmonella enterica isolated from humans, beef cattle and abattoir environments in Nigeria.
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- PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0296971
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- Article
Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand.
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- BMC Microbiology, 2012, v. 12, n. 1, p. 92, doi. 10.1186/1471-2180-12-92
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- Article
An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02351
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- Article
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08853-3
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- Article
Antimicrobial-resistant Shigella infections from Iran: an overlooked problem?
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- Journal of Antimicrobial Chemotherapy (JAC), 2012, v. 67, n. 5, p. 1128, doi. 10.1093/jac/dks023
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- Article
Setting a baseline for global urban virome surveillance in sewage.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-69869-0
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- Article
Worldwide human mitochondrial haplogroup distribution from urban sewage.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48093-5
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- Article
Molecular Characteristics and Zoonotic Potential of Salmonella Weltevreden From Cultured Shrimp and Tilapia in Vietnam and China.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.01985
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- Article
Corrigendum: Occurrence and Characterization of mcr-1 -Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011–2016.
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- 2019
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- Correction Notice
Occurrence and Characterization of mcr-1 -Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011–2016.
- Published in:
- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01753
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- Article
Extended-Spectrum-Beta-Lactamases, AmpC Beta-Lactamases and Plasmid Mediated Quinolone Resistance in <i>Klebsiella</i> spp. from Companion Animals in Italy.
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- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090564
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- Article
The Role of the <i>st313-td</i> Gene in Virulence of <i>Salmonella</i> Typhimurium ST313.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0084566
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- Article
Characterization of Salmonella Occurring at High Prevalence in a Population of the Land Iguana Conolophus subcristatus in Gala'pagos Islands, Ecuador.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023147
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- Article
International Spread of an Epidemic Population of Salmonella enterica Serotype Kentucky ST198 Resistant to Ciprofloxacin.
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- Journal of Infectious Diseases, 1997, v. 176, n. 5, p. 675
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- Article
First Report and Characterization of the mcr-1 Positive Multidrug-Resistant Escherichia coli Strain Isolated from Pigs in Croatia.
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- Microorganisms, 2023, v. 11, n. 10, p. 2442, doi. 10.3390/microorganisms11102442
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- Article
Quantitative Microbial Risk Assessment Based on Whole Genome Sequencing Data: Case of Listeria monocytogenes.
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- Microorganisms, 2020, v. 8, n. 11, p. 1772, doi. 10.3390/microorganisms8111772
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- Article
Genetic relatedness of multidrug resistant Escherichia coli isolated from humans, chickens and poultry environments.
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- Antimicrobial Resistance & Infection Control, 2021, v. 10, n. 1, p. 1, doi. 10.1186/s13756-021-00930-x
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- Article
Emergence and Clonal Spread of CTX-M-65-Producing Escherichia coli From Retail Meat in Portugal.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.653595
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- Article
Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.575377
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- Article
A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more.
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- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0242987
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- Article
Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities.
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- BMC Infectious Diseases, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12879-015-0902-3
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- Article
Author Correction: Setting a baseline for global urban virome surveillance in sewage.
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- 2021
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- Correction Notice
Prevalence and risk factors for faecal carriage of multidrug resistant Escherichia coli among slaughterhouse workers.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92819-3
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- Article
Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71693-5
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- Publication type:
- Article
Surveillance and Genomics of Toxigenic Vibrio cholerae O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00901
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- Article
Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00179
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- Publication type:
- Article
Molecular Epidemiology of mcr-Encoded Colistin Resistance in Enterobacteriaceae From Food-Producing Animals in Italy Revealed Through the EU Harmonized Antimicrobial Resistance Monitoring.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01217
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- Article
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.
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- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169324
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- Article
Quinolone-resistant Escherichia coli at the interface between humans, poultry and their shared environment- a potential public health risk.
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- One Health Outlook, 2023, v. 5, n. 1, p. 1, doi. 10.1186/s42522-023-00079-0
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- Article
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach.
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- PLoS ONE, 2019, v. 14, n. 10, p. 1, doi. 10.1371/journal.pone.0222531
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- Article
Enterococcus species: insights into antimicrobial resistance and whole-genome features of isolates recovered from livestock and raw meat in Ghana.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1254896
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- Publication type:
- Article
Evaluation and validation of laboratory procedures for the surveillance of ESBL-, AmpC-, and carbapenemase-producing Escherichia coli from fresh meat and caecal samples.
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- Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1229542
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- Article
Human skin bacterial flora differ with altitudes in different ethnic groups of Nepal.
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- Asian Journal of Medical Sciences, 2019, v. 10, n. 6, p. 11, doi. 10.3126/ajms.v10i6.25205
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- Article
Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius.
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- Journal of Infection in Developing Countries, 2014, v. 8, n. 4, p. 454, doi. 10.3855/jidc.3695
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- Publication type:
- Article
Persistence of fluoroquinolone-resistant Salmonella enterica serovar Kentucky from poultry and poultry sources in Nigeria.
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- Journal of Infection in Developing Countries, 2014, v. 8, n. 3, p. 384, doi. 10.3855/jidc.3495
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- Article