Works by Heitkam, Tony

Results: 35

Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution.

Published in:

New Phytologist, 2025, v. 247, n. 3, p. 1520, doi. 10.1111/nph.70280

By:

Kim, Woorin;
Schmidt, Nicola;
Jost, Matthias;
Mkala, Elijah Mbandi;
Winkler, Sylke;
Hu, Guangwan;
Heitkam, Tony;
Wanke, Stefan

Publication type:

Article

Next-generation sequencing reveals differentially amplified tandem repeats as a major genome component of Northern Europe's oldest Camellia japonica.

Published in:

Chromosome Research, 2015, v. 23, n. 4, p. 791, doi. 10.1007/s10577-015-9500-x

By:

Heitkam, Tony;
Petrasch, Stefan;
Zakrzewski, Falk;
Kögler, Anja;
Wenke, Torsten;
Wanke, Stefan;
Schmidt, Thomas

Publication type:

Article

The diversification and activity of hAT transposons in Musa genomes.

Published in:

Chromosome Research, 2014, v. 22, n. 4, p. 559, doi. 10.1007/s10577-014-9445-5

By:

Menzel, Gerhard;
Heitkam, Tony;
Seibt, Kathrin;
Nouroz, Faisal;
Müller-Stoermer, Manuela;
Heslop-Harrison, John;
Schmidt, Thomas

Publication type:

Article

The Ty1- copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age.

Published in:

Chromosome Research, 2010, v. 18, n. 2, p. 247, doi. 10.1007/s10577-009-9104-4

By:

Weber, Beatrice;
Wenke, Torsten;
Frömmel, Ulrike;
Schmidt, Thomas;
Heitkam, Tony

Publication type:

Article

Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets.

Published in:

Plant Journal, 2024, v. 118, n. 1, p. 171, doi. 10.1111/tpj.16599

By:

Schmidt, Nicola;
Sielemann, Katharina;
Breitenbach, Sarah;
Fuchs, Jörg;
Pucker, Boas;
Weisshaar, Bernd;
Holtgräwe, Daniela;
Heitkam, Tony

Publication type:

Article

How to start a LINE: 5′ switching rejuvenates LINE retrotransposons in tobacco and related Nicotiana species.

Published in:

Plant Journal, 2023, v. 115, n. 1, p. 52, doi. 10.1111/tpj.16208

By:

Hartig, Nora;
Seibt, Kathrin M.;
Heitkam, Tony

Publication type:

Article

Divergence of 3′ ends as a driver of short interspersed nuclear element (SINE) evolution in the Salicaceae.

Published in:

Plant Journal, 2020, v. 103, n. 1, p. 443, doi. 10.1111/tpj.14721

By:

Kögler, Anja;
Seibt, Kathrin M.;
Heitkam, Tony;
Morgenstern, Kristin;
Reiche, Birgit;
Brückner, Marie;
Wolf, Heino;
Krabel, Doris;
Schmidt, Thomas

Publication type:

Article

Satellite DNA landscapes after allotetraploidization of quinoa (Chenopodium quinoa) reveal unique A and B subgenomes.

Published in:

Plant Journal, 2020, v. 103, n. 1, p. 32, doi. 10.1111/tpj.14705

By:

Heitkam, Tony;
Weber, Beatrice;
Walter, Ines;
Liedtke, Susan;
Ost, Charlotte;
Schmidt, Thomas

Publication type:

Article

The conserved 3′ Angio‐domain defines a superfamily of short interspersed nuclear elements (SINEs) in higher plants.

Published in:

Plant Journal, 2020, v. 101, n. 3, p. 681, doi. 10.1111/tpj.14567

By:

Seibt, Kathrin M.;
Schmidt, Thomas;
Heitkam, Tony

Publication type:

Article

Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.

Published in:

Plant Journal, 2014, v. 79, n. 3, p. 385, doi. 10.1111/tpj.12565

By:

Heitkam, Tony;
Holtgräwe, Daniela;
Dohm, Juliane C.;
Minoche, André E.;
Himmelbauer, Heinz;
Weisshaar, Bernd;
Schmidt, Thomas

Publication type:

Article

Preparing high-quality chromosome spreads from Crocus species for karyotyping and FISH: High-quality chromosome spreads in Crocus: A. El-nagish et al.

Published in:

Molecular Cytogenetics (17558166), 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13039-025-00706-7

By:

El-nagish, Abdullah;
Liedtke, Susan;
Breitenbach, Sarah;
Heitkam, Tony

Publication type:

Article

High-fidelity (repeat) consensus sequences from short reads using combined read clustering and assembly.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-023-09948-4

By:

Mann, Ludwig;
Balasch, Kristin;
Schmidt, Nicola;
Heitkam, Tony

Publication type:

Article

Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus cartwrightianus cytotypes.

Published in:

New Phytologist, 2019, v. 222, n. 4, p. 1965, doi. 10.1111/nph.15715

By:

Schmidt, Thomas;
Heitkam, Tony;
Liedtke, Susan;
Schubert, Veit;
Menzel, Gerhard

Publication type:

Article

Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus cartwrightianus cytotypes.

Published in:

New Phytologist, 2019, v. 222, n. 4, p. 1965, doi. 10.1111/nph.15715

By:

Schmidt, Thomas;
Heitkam, Tony;
Liedtke, Susan;
Schubert, Veit;
Menzel, Gerhard

Publication type:

Article

Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.

Published in:

Plant Journal, 2012, v. 72, n. 4, p. 636, doi. 10.1111/j.1365-313X.2012.05107.x

By:

Wollrab, Cora;
Heitkam, Tony;
Holtgräwe, Daniela;
Weisshaar, Bernd;
Minoche, André E.;
Dohm, Juliane C.;
Himmelbauer, Heinz;
Schmidt, Thomas

Publication type:

Article

BNR – a LINE family from Beta vulgaris– contains a RRM domain in open reading frame 1 and defines a L1 sub-clade present in diverse plant genomes.

Published in:

Plant Journal, 2009, v. 59, n. 6, p. 872, doi. 10.1111/j.1365-313X.2009.03923.x

By:

Heitkam, Tony;
Schmidt, Thomas

Publication type:

Article

TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.

Published in:

2021

By:

Elliott, Tyler A.;
Heitkam, Tony;
Hubley, Robert;
Quesneville, Hadi;
Suh, Alexander;
Wheeler, Travis J.

Publication type:

Letter

Application of retrotransposon-based Inter-SINE Amplified Polymorphism (ISAP) markers for the differentiation of common poplar genotypes.

Published in:

Canadian Journal of Forest Research, 2021, v. 51, n. 11, p. 1650, doi. 10.1139/cjfr-2020-0209

By:

Reiche, Birgit;
Kögler, Anja;
Morgenstern, Kristin;
Brückner, Marie;
Weber, Beatrice;
Heitkam, Tony;
Seibt, Kathrin M.;
Tröber, Ute;
Meyer, Matthias;
Wolf, Heino;
Schmidt, Thomas;
Krabel, Doris

Publication type:

Article

ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-021-04545-2

By:

Mann, Ludwig;
Seibt, Kathrin M.;
Weber, Beatrice;
Heitkam, Tony

Publication type:

Article

Bioinformatic and Molecular Analysis of Satellite Repeat Diversity in Vaccinium Genomes.

Published in:

Genes, 2020, v. 11, n. 5, p. 527, doi. 10.3390/genes11050527

By:

Sultana, Nusrat;
Menzel, Gerhard;
Heitkam, Tony;
Kojima, Kenji K.;
Bao, Weidong;
Serçe, Sedat

Publication type:

Article

Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08336-8

By:

Sielemann, Katharina;
Pucker, Boas;
Schmidt, Nicola;
Viehöver, Prisca;
Weisshaar, Bernd;
Heitkam, Tony;
Holtgräwe, Daniela

Publication type:

Article

Balancing Retrospection and Visions: The Cytogenetics Group of the Society of Plant Breeding (GPZ) Came Together in Dresden.

Published in:

Cytogenetic & Genome Research, 2019, v. 159, n. 4, p. 163, doi. 10.1159/000505280

By:

Heitkam, Tony

Publication type:

Article

Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03455-0

By:

Schulte, Luise;
Meucci, Stefano;
Stoof-Leichsenring, Kathleen R.;
Heitkam, Tony;
Schmidt, Nicola;
von Hippel, Barbara;
Andreev, Andrei A.;
Diekmann, Bernhard;
Biskaborn, Boris K.;
Wagner, Bernd;
Melles, Martin;
Pestryakova, Lyudmila A.;
Alsos, Inger G.;
Clarke, Charlotte;
Krutovsky, Konstantin V.;
Herzschuh, Ulrike

Publication type:

Article

Ancient Artworks and Crocus Genetics Both Support Saffron's Origin in Early Greece.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.834416

By:

Kazemi-Shahandashti, Seyyedeh-Sanam;
Mann, Ludwig;
El-nagish, Abdullah;
Harpke, Dörte;
Nemati, Zahra;
Usadel, Björn;
Heitkam, Tony

Publication type:

Article

Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.683668

By:

Heitkam, Tony;
Schulte, Luise;
Weber, Beatrice;
Liedtke, Susan;
Breitenbach, Sarah;
Kögler, Anja;
Morgenstern, Kristin;
Brückner, Marie;
Tröber, Ute;
Wolf, Heino;
Krabel, Doris;
Schmidt, Thomas

Publication type:

Article

The Dynamic Interplay Between Ribosomal DNA and Transposable Elements: A Perspective From Genomics and Cytogenetics.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 3, p. 1, doi. 10.1093/molbev/msae025

By:

Garcia, Sònia;
Kovarik, Ales;
Maiwald, Sophie;
Mann, Ludwig;
Schmidt, Nicola;
Pascual-Díaz, Joan Pere;
Vitales, Daniel;
Weber, Beatrice;
Heitkam, Tony

Publication type:

Article

Evolving Together: Cassandra Retrotransposons Gradually Mirror Promoter Mutations of the 5S rRNA Genes.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 2, p. 1, doi. 10.1093/molbev/msae010

By:

Maiwald, Sophie;
Mann, Ludwig;
Garcia, Sònia;
Heitkam, Tony

Publication type:

Article

FlexiDot: highly customizable, ambiguity-aware dotplots for visual sequence analyses.

Published in:

Bioinformatics, 2018, v. 34, n. 20, p. 3575, doi. 10.1093/bioinformatics/bty395

By:

Seibt, Kathrin M;
Schmidt, Thomas;
Heitkam, Tony

Publication type:

Article

BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relatives.

Published in:

BMC Research Notes, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13104-024-06993-4

By:

Schmidt, Nicola;
Maiwald, Sophie;
Mann, Ludwig;
Weber, Beatrice;
Seibt, Kathrin M.;
Breitenbach, Sarah;
Liedtke, Susan;
Menzel, Gerhard;
Weisshaar, Bernd;
Holtgräwe, Daniela;
Heitkam, Tony

Publication type:

Article

TE-Tracker: systematic identification of transposition events through whole-genome resequencing.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0377-z

By:

Gilly, Arthur;
Etcheverry, Mathilde;
Madoui, Mohammed-Amin;
Guy, Julie;
Quadrana, Leandro;
Alberti, Adriana;
Martin, Antoine;
Heitkam, Tony;
Engelen, Stefan;
Labadie, Karine;
Le Pen, Jeremie;
Wincker, Patrick;
Colot, Vincent;
Aury, Jean-Marc

Publication type:

Article

Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration.

Published in:

Mobile DNA, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-8753-4-8

By:

Weber, Beatrice;
Heitkam, Tony;
Holtgräwe, Daniela;
Weisshaar, Bernd;
Minoche, André E.;
Dohm, Juliane C.;
Himmelbauer, Heinz;
Schmidt, Thomas

Publication type:

Article

Repeatome landscapes and cytogenetics of hortensias provide a framework to trace Hydrangea evolution and domestication.

Published in:

Annals of Botany, 2025, v. 135, n. 3, p. 549, doi. 10.1093/aob/mcae184

By:

Ishiguro, Sara;
Taniguchi, Shota;
Schmidt, Nicola;
Jost, Matthias;
Wanke, Stefan;
Heitkam, Tony;
Ohmido, Nobuko

Publication type:

Article

Can we have it all? Repurposing target capture for repeat genomics. A commentary on: 'Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA'.

Published in:

Annals of Botany, 2021, v. 128, n. 7, p. iii, doi. 10.1093/aob/mcab080

By:

Heitkam, Tony;
Garcia, Sònia

Publication type:

Article

Broken, silent, and in hiding: tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris).

Published in:

Annals of Botany, 2021, v. 128, n. 3, p. 281, doi. 10.1093/aob/mcab042

By:

Schmidt, Nicola;
Seibt, Kathrin M;
Weber, Beatrice;
Schwarzacher, Trude;
Schmidt, Thomas;
Heitkam, Tony

Publication type:

Article

The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variability.

Published in:

Annals of Botany, 2021, v. 127, n. 1, p. 91, doi. 10.1093/aob/mcaa176

By:

Maiwald, Sophie;
Weber, Beatrice;
Seibt, Kathrin M;
Schmidt, Thomas;
Heitkam, Tony

Publication type:

Article