Works by Hegarty, Matthew

Results: 47

Genetic dissection of minerals and phytate content in pearl millet germplasm panel using genome‐wide association study.

Published in:

Food & Energy Security, 2024, v. 13, n. 4, p. 1, doi. 10.1002/fes3.565

By:

Singh, Satbeer;
Manwaring, Hanna Rose;
Naveen, Aavula;
Hegarty, Matthew;
Yadav, Rattan S.

Publication type:

Article

Population structure and genetic diversity in red clover (Trifolium pratense L.) germplasm.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-64989-z

By:

Jones, Charlotte;
De Vega, Jose;
Lloyd, David;
Hegarty, Matthew;
Ayling, Sarah;
Powell, Wayne;
Skøt, Leif

Publication type:

Article

Hybrid speciation in plants: new insights from molecular studies.

Published in:

New Phytologist, 2005, v. 165, n. 2, p. 411, doi. 10.1111/j.1469-8137.2004.01253.x

By:

Hegarty, Matthew J.;
Hiscock, Simon J.

Publication type:

Article

Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 8, p. 2088, doi. 10.1093/gbe/evu166

By:

Hargreaves, Adam D.;
Swain, Martin T.;
Hegarty, Matthew J.;
Logan, Darren W.;
Mulley, John F.

Publication type:

Article

Generation of whole genome sequences of Knew Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1805-9

By:

Hadfield, Stephen J.;
Pachebat, Justin A.;
Swain, Martin T.;
Robinson, Guy;
Cameron, Simon J. S.;
Alexander, Jenna;
Hegarty, Matthew J.;
Elwin, Kristin;
Chalmers, Rachel M.

Publication type:

Article

Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 432, doi. 10.1186/1471-2164-15-1074

By:

Mulley, John F.;
Hargreaves, Adam D.;
Hegarty, Matthew J.;
Heller, R. Scott;
Swain, Martin T.

Publication type:

Article

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-453

By:

Yates, Steven A.;
Swain, Martin T.;
Hegarty, Matthew J.;
Chernukin, Igor;
Lowe, Matthew;
Allison, Gordon G.;
Ruttink, Tom;
Abberton, Michael T.;
Jenkins, Glyn;
Skøt, Leif

Publication type:

Article

Metagenomic Sequencing of the Chronic Obstructive Pulmonary Disease Upper Bronchial Tract Microbiome Reveals Functional Changes Associated with Disease Severity.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149095

By:

Cameron, Simon J. S.;
Lewis, Keir E.;
Huws, Sharon A.;
Lin, Wanchang;
Hegarty, Matthew J.;
Lewis, Paul D.;
Mur, Luis A. J.;
Pachebat, Justin A.

Publication type:

Article

Polyomic tools for an emerging livestock parasite, the rumen fluke Calicophoron daubneyi; identifying shifts in rumen functionality.

Published in:

Parasites & Vectors, 2018, v. 11, n. 1, p. 1, doi. 10.1186/s13071-018-3225-6

By:

Huson, Kathryn M.;
Morphew, Russell M.;
Allen, Nathan R.;
Hegarty, Matthew J.;
Worgan, Hillary J.;
Girdwood, Susan E.;
Jones, Eleanor L.;
Phillips, Helen C.;
Vickers, Martin;
Swain, Martin;
Smith, Daniel;
Kingston-Smith, Alison H.;
Brophy, Peter M.

Publication type:

Article

The complete mitochondrial genome of record-breaking migrant Arctic tern (Sterna paradisaea).

Published in:

Mitochondrial DNA: Resources, 2019, v. 4, n. 2, p. 2738, doi. 10.1080/23802359.2019.1644225

By:

Skujina, Ilze;
Healey, Amy Jane Elizabeth;
de Becquevort, Sophie;
Shaw, Paul William;
McMahon, Robert;
Morgan, Charly;
Evans, Caron;
Taylor, Rachel;
Hegarty, Matthew;
McKeown, Niall Joseph

Publication type:

Article

Genomic diversity of Cameroonian Gudali and Gudali-cross cattle.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-99799-8

By:

Poutougnigni Matenchi, Youchahou;
Hegarty, Matthew

Publication type:

Article

Temporal Metagenomic and Metabolomic Characterization of Fresh Perennial Ryegrass Degradation by Rumen Bacteria.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01854

By:

Mayorga, Olga L.;
Kingston-Smith, Alison H.;
Kim, Eun J.;
Allison, Gordon G.;
Wilkinson, Toby J.;
Hegarty, Matthew J.;
Theodorou, Michael K.;
Newbold, Charles J.;
Huws, Sharon A.

Publication type:

Article

Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne).

Published in:

PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0220518

By:

Fradera-Sola, Albert;
Thomas, Ann;
Gasior, Dagmara;
Harper, John;
Hegarty, Matthew;
Armstead, Ian;
Fernandez-Fuentes, Narcis

Publication type:

Article

Identification of transposon-tagged genes by the random sequencing of Mutator-tagged DNA fragments from Zea mays.

Published in:

Plant Journal, 2000, v. 23, n. 4, p. 557, doi. 10.1046/j.1365-313x.2000.00830.x

By:

Hanley, Steven;
Edwards, David;
Stevenson, David;
Haines, Stephen;
Hegarty, Matthew;
Schuch, Wolfgang;
Edwards, Keith J.

Publication type:

Article

Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass.

Published in:

Molecular Ecology Resources, 2021, v. 21, n. 3, p. 849, doi. 10.1111/1755-0998.13289

By:

Blanco‐Pastor, José Luis;
Barre, Philippe;
Keep, Thomas;
Ledauphin, Thomas;
Escobar‐Gutiérrez, Abraham;
Roschanski, Anna Maria;
Willner, Evelyn;
Dehmer, Klaus J.;
Hegarty, Matthew;
Muylle, Hilde;
Veeckman, Elisabeth;
Vandepoele, Klaas;
Ruttink, Tom;
Roldán‐Ruiz, Isabel;
Manel, Stéphanie;
Sampoux, Jean‐Paul

Publication type:

Article

Generalisation and specialisation in hoverfly (Syrphidae) grassland pollen transport networks revealed by DNA metabarcoding.

Published in:

Journal of Animal Ecology, 2018, v. 87, n. 4, p. 1008, doi. 10.1111/1365-2656.12828

By:

Lucas, Andrew;
Bodger, Owen;
Brosi, Berry J.;
Ford, Col R.;
Forman, Dan W.;
Greig, Carolyn;
Hegarty, Matthew;
Neyland, Penelope J.;
De Vere, Natasha

Publication type:

Article

A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177062

By:

Cameron, Simon J. S.;
Lewis, Keir E.;
Huws, Sharon A.;
Hegarty, Matthew J.;
Lewis, Paul D.;
Pachebat, Justin A.;
Mur, Luis A. J.

Publication type:

Article

Ecological and Genetic Monitoring of a Recently Established Osprey (Pandion haliaetus) Population in Wales.

Published in:

Journal of Raptor Research, 2021, v. 55, n. 4, p. 635, doi. 10.3356/JRR-20-87

By:

Skujina, Ilze;
Ougham, Helen;
Evans, Emyr;
Monti, Flavio;
Kalvāns, Aigars;
Cross, Tony;
Macarie, Nicolae Adrian;
Hegarty, Matthew;
Shaw, Paul W.;
McKeown, Niall J.

Publication type:

Article

Detecting genetic regions associated with height in the native ponies of the British Isles by using high density SNP genotyping.

Published in:

Genome, 2018, v. 61, n. 10, p. 767, doi. 10.1139/gen-2018-0006

By:

Skujina, Ilze;
Winton, Clare L.;
Hegarty, Matthew J.;
McMahon, Robert;
Nash, Deborah M.;
Davies Morel, Mina C.G.;
McEwan, Neil R.;
Canovas, A.

Publication type:

Article

Evidence of Immune Modulators in the Secretome of the Equine Tapeworm Anoplocephala perfoliata.

Published in:

Pathogens, 2021, v. 10, n. 7, p. 912, doi. 10.3390/pathogens10070912

By:

Wititkornkul, Boontarikaan;
Hulme, Benjamin J.;
Tomes, John J.;
Allen, Nathan R.;
Davis, Chelsea N.;
Davey, Sarah D.;
Cookson, Alan R.;
Phillips, Helen C.;
Hegarty, Matthew J.;
Swain, Martin T.;
Brophy, Peter M.;
Wonfor, Ruth E.;
Morphew, Russell M.

Publication type:

Article

Genotyping by RAD sequencing enables mapping of fatty acid composition traits in perennial ryegrass ( Lolium perenne ( L.)).

Published in:

Plant Biotechnology Journal, 2013, v. 11, n. 5, p. 572, doi. 10.1111/pbi.12045

By:

Hegarty, Matthew;
Yadav, Rattan;
Lee, Michael;
Armstead, Ian;
Sanderson, Ruth;
Scollan, Nigel;
Powell, Wayne;
Skøt, Leif

Publication type:

Article

A Novel Multivariate Approach to Phenotyping and Association Mapping of Multi-Locus Gametophytic Self-Incompatibility Reveals S, Z, and Other Loci in a Perennial Ryegrass (Poaceae) Population.

Published in:

Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01331

By:

Thorogood, Daniel;
Yates, Steven;
Manzanares, Chloé;
Skot, Leif;
Hegarty, Matthew;
Blackmore, Tina;
Barth, Susanne;
Studer, Bruno

Publication type:

Article

Pollen–pistil interactions and self-incompatibility in the Asteraceae: new insights from studies of Senecio squalidus (Oxford ragwort).

Published in:

Annals of Botany, 2011, v. 108, n. 4, p. 687, doi. 10.1093/aob/mcr147

By:

Allen, Alexandra M.;
Thorogood, Christopher J.;
Hegarty, Matthew J.;
Lexer, Christian;
Hiscock, Simon J.

Publication type:

Article

High-throughput genome-wide genotyping to optimize the use of natural genetic resources in the grassland species perennial ryegrass (Lolium perenne L.).

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.120.401491

By:

Keep, Thomas;
Sampoux, Jean-Paul;
Blanco-Pastor, José Luis;
Dehmer, Klaus J.;
Hegarty, Matthew J.;
Ledauphin, Thomas;
Litrico, Isabelle;
Muylle, Hilde;
Roldán-Ruiz, Isabel;
Roschanski, Anna 5 M.;
Ruttink, Tom;
Surault, Fabien;
Willner, Evelin;
Barre, Philippe

Publication type:

Article

Metaphylogenomic and Potential Functionality of the Limpet Patella pellucida''s Gastrointestinal Tract Microbiome.

Published in:

International Journal of Molecular Sciences, 2014, v. 15, n. 10, p. 18819, doi. 10.3390/ijms151018819

By:

Dudek, Magda;
Adams, Jessica;
Swain, Martin;
Hegarty, Matthew;
Huws, Sharon;
Gallagher, Joe

Publication type:

Article

A comparison of shared patterns of differential gene expression and gene ontologies in response to water-stress in roots and leaves of four diverse genotypes of Lolium and Festuca spp. temperate pasture grasses.

Published in:

PLoS ONE, 2021, v. 16, n. 4, p. 1, doi. 10.1371/journal.pone.0249636

By:

Fu, Yuan;
Thomas, Ann;
Gasior, Dagmara;
Harper, John;
Gay, Alan;
Jones, Charlotte;
Hegarty, Matthew;
Asp, Torben;
Fradera-Sola, Albert;
Armstead, Ian;
Fernandez-Fuentes, Narcis

Publication type:

Article

Interaction of preimplantation factor with the global bovine endometrial transcriptome.

Published in:

PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0242874

By:

Wonfor, Ruth E.;
Creevey, Christopher J.;
Natoli, Manuela;
Hegarty, Matthew;
Nash, Deborah M.;
Rose, Michael T.

Publication type:

Article

Linking Auxin with Photosynthetic Rate via Leaf Venation.

Published in:

Plant Physiology, 2017, v. 175, n. 1, p. 351, doi. 10.1104/pp.17.00535

By:

McAdam, Scott A. M.;
Eléouët, Morgane P.;
Best, Melanie;
Brodribb, Timothy J.;
Murphy, Madeline Carins;
Cook, Sam D.;
Dalmais, Marion;
Dimitriou, Theodore;
Gélinas-Marion, Ariane;
Gill, Warwick M.;
Hegarty, Matthew;
Hofer, Julie M. I.;
Maconochie, Mary;
McAdam, Erin L.;
McGuiness, Peter;
Nichols, David S.;
Ross, John J.;
Sussmilch, Frances C.;
Urquhart, Shelley

Publication type:

Article

Genome-wide SNPs and candidate genes underlying the genetic variations for protein and amino acids in pearl millet (Pennisetum glaucum) germplasm.

Published in:

Planta: An International Journal of Plant Biology, 2024, v. 260, n. 3, p. 1, doi. 10.1007/s00425-024-04495-y

By:

Singh, Satbeer;
Yadav, Chandra Bhan;
Lubanga, Nelson;
Hegarty, Matthew;
Yadav, Rattan S.

Publication type:

Article

Erratum: Influenza C in Lancaster, UK, in the winter of 2014-2015.

Published in:

Scientific Reports, 2017, p. 46815, doi. 10.1038/srep46815

By:

Atkinson, Kate V.;
Bishop, Lisa A.;
Rhodes, Glenn;
Salez, Nicolas;
McEwan, Neil R.;
Hegarty, Matthew J.;
Robey, Julie;
Harding, Nicola;
Wetherell, Simon;
Lauder, Robert M.;
Pickup, Roger W.;
Wilkinson, Mark;
Gatherer, Derek

Publication type:

Article

Influenza C in Lancaster, UK, in the winter of 2014-2015.

Published in:

Scientific Reports, 2017, p. 46578, doi. 10.1038/srep46578

By:

Atkinson, Kate V.;
Bishop, Lisa A.;
Rhodes, Glenn;
Salez, Nicolas;
McEwan, Neil R.;
Hegarty, Matthew J.;
Robey, Julie;
Harding, Nicola;
Wetherell, Simon;
Lauder, Robert M.;
Pickup, Roger W.;
Wilkinson, Mark;
Gatherer, Derek

Publication type:

Article

Using DNA metabarcoding to investigate honey bee foraging reveals limited flower use despite high floral availability.

Published in:

Scientific Reports, 2017, p. 42838, doi. 10.1038/srep42838

By:

de Vere, Natasha;
Jones, Laura E.;
Gilmore, Tegan;
Moscrop, Jake;
Lowe, Abigail;
Smith, Dan;
Hegarty, Matthew J.;
Creer, Simon;
Ford, Col R.

Publication type:

Article

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.

Published in:

Scientific Reports, 2015, v. 5, n. 1, p. 17394, doi. 10.1038/srep17394

By:

De Vega, Jose J.;
Ayling, Sarah;
Hegarty, Matthew;
Kudrna, Dave;
Goicoechea, Jose L.;
Ergon, Åshild;
Rognli, Odd A.;
Jones, Charlotte;
Swain, Martin;
Geurts, Rene;
Lang, Chunting;
Mayer, Klaus F. X.;
Rössner, Stephan;
Yates, Steven;
Webb, Kathleen J.;
Donnison, Iain S.;
Oldroyd, Giles E. D.;
Wing, Rod A.;
Caccamo, Mario;
Powell, Wayne

Publication type:

Article

Using DNA Metabarcoding to Identify the Floral Composition of Honey: A New Tool for Investigating Honey Bee Foraging Preferences.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0134735

By:

Hawkins, Jennifer;
de Vere, Natasha;
Griffith, Adelaide;
Ford, Col R.;
Allainguillaume, Joel;
Hegarty, Matthew J.;
Baillie, Les;
Adams-Groom, Beverley

Publication type:

Article

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3083-6

By:

Mora-Ortiz, Marina;
Swain, Martin T.;
Vickers, Martin J.;
Hegarty, Matthew J.;
Kelly, Rhys;
Smith, Lydia M. J.;
Skøt, Leif

Publication type:

Article

Homoploid hybrid speciation in action.

Published in:

Taxon, 2010, v. 59, n. 5, p. 1375

By:

Abbott, Richard J.;
Hegarty, Matthew J.;
Hiscock, Simon J.;
Brennan, Adrian C.

Publication type:

Article

Recent hybrid origin and invasion of the British Isles by a self-incompatible species, Oxford ragwort (Senecio squalidus L., Asteraceae).

Published in:

Biological Invasions, 2009, v. 11, n. 5, p. 1145, doi. 10.1007/s10530-008-9382-3

By:

Richard Abbott;
Juliet James;
David Forbes;
Matthew Hegarty;
Simon Hiscock

Publication type:

Article

Exploiting a fast neutron mutant genetic resource in Pisum sativum (pea) for functional genomics.

Published in:

Functional Plant Biology, 2013, v. 40, n. 12, p. 1261, doi. 10.1071/FP13147

By:

Claire, Domoney;
Knox, Maggie;
Moreau, Carol;
Ambrose, Mike;
Palmer, Sarah;
Smith, Peter;
Christodoulou, Vangelis;
Isaac, Peter G.;
Hegarty, Matthew;
Blackmore, Tina;
Swain, Martin;
Ellis, Noel

Publication type:

Article

Pollen metabarcoding reveals broad and species-specific resource use by urban bees.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.5999

By:

Potter, Caitlin;
de Vere, Natasha;
Jones, Laura E.;
Ford, Col R.;
Hegarty, Matthew J.;
Hodder, Kathy H.;
Diaz, Anita;
Franklin, Elizabeth L.

Publication type:

Article

Identification of Stipules reduced, a leaf morphology gene in pea (Pisum sativum).

Published in:

New Phytologist, 2018, v. 220, n. 1, p. 288, doi. 10.1111/nph.15286

By:

Moreau, Carol;
Ambrose, Mike;
Eléouët, Morgane;
Skøt, Kirsten;
Blackmore, Tina;
Swain, Martin;
Hegarty, Matthew;
Hofer, Julie M. I.;
Ellis, T. H. Noel;
Sinjushin, Andrey;
Balanzà, Vicente;
Ferrándiz, Cristina

Publication type:

Article

Genetic diversity within and between British and Irish breeds: The maternal and paternal history of native ponies.

Published in:

Ecology & Evolution (20457758), 2020, v. 10, n. 3, p. 1352, doi. 10.1002/ece3.5989

By:

Winton, Clare L.;
McMahon, Robert;
Hegarty, Matthew J.;
McEwan, Neil R.;
Davies‐Morel, Mina C. G.;
Morgan, Charly;
Nash, Deborah M.

Publication type:

Article

Comparative genetic diversity in a sample of pony breeds from the U.K. and North America: a case study in the conservation of global genetic resources.

Published in:

Ecology & Evolution (20457758), 2015, v. 5, n. 16, p. 3507, doi. 10.1002/ece3.1562

By:

Winton, Clare L.;
Plante, Yves;
Hind, Pamela;
McMahon, Robert;
Hegarty, Matthew J.;
McEwan, Neil R.;
Davies-Morel, Mina C. G.;
Morgan, Charly M.;
Powell, Wayne;
Nash, Deborah M.

Publication type:

Article

Genetic diversity and phylogenetic analysis of native mountain ponies of Britain and Ireland reveals a novel rare population.

Published in:

Ecology & Evolution (20457758), 2013, v. 3, n. 4, p. 934, doi. 10.1002/ece3.507

By:

Winton, Clare L.;
Hegarty, Matthew J.;
McMahon, Robert;
Slavov, Gancho T.;
McEwan, Neil R.;
Davies‐Morel, Mina C. G.;
Morgan, Charly M.;
Powell, Wayne;
Nash, Deborah M.

Publication type:

Article

Deep Sequencing of Suppression Subtractive Hybridisation Drought and Recovery Libraries of the Non-model Crop Trifolium repens L.

Published in:

Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00213

By:

Bisaga, Maciej;
Lowe, Matthew;
Hegarty, Matthew;
Abberton, Michael;
Ravagnani, Adriana

Publication type:

Article

Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae).

Published in:

Molecular Ecology, 2011, v. 20, n. 1, p. 105, doi. 10.1111/j.1365-294X.2010.04926.x

By:

Hegarty, Matthew J.;
Batstone, Tom;
Barker, Gary L.;
Edwards, Keith J.;
Abbott, Richard J.;
Hiscock, Simon J.

Publication type:

Article

Extreme changes to gene expression associated with homoploid hybrid speciation.

Published in:

Molecular Ecology, 2009, v. 18, n. 5, p. 877, doi. 10.1111/j.1365-294X.2008.04054.x

By:

HEGARTY, MATTHEW J.;
BARKER, GARY L.;
BRENNAN, ADRIAN C.;
EDWARDS, KEITH J.;
ABBOTT, RICHARD J.;
HISCOCK, SIMON J.

Publication type:

Article

Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation.

Published in:

Molecular Ecology, 2005, v. 14, n. 8, p. 2493, doi. 10.1111/j.1365-294x.2005.02608.x

By:

Hegarty, Matthew J.;
Jones, Joanna M.;
Wilson, Ian D.;
Barker, Gary L.;
Coghill, Jane A.;
Sanchez-Baracaldo, Patricia;
Guoqing Liu;
Buggs, Richard J. A.;
Abbott, Richard J.;
Edwards, Keith J.;
Hiscock, Simon J.

Publication type:

Article