Works by Heffernan, Rhys

Results: 8

Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2842, doi. 10.1093/bioinformatics/btx218

By:

Heffernan, Rhys;
Yuedong Yang;
Paliwal, Kuldip;
Yaoqi Zhou

Publication type:

Article

Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 843, doi. 10.1093/bioinformatics/btv665

By:

Heffernan, Rhys;
Dehzangi, Abdollah;
Lyons, James;
Paliwal, Kuldip;
Sharma, Alok;
Jihua Wang;
Sattar, Abdul;
Yaoqi Zhou;
Yuedong Yang

Publication type:

Article

Gram-positive and gram-negative subcellular localization using rotation forest and physicochemical-based features.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S4-S1

By:

Dehzangi, Abdollah;
Sohrabi, Sohrab;
Heffernan, Rhys;
Sharma, Alok;
Lyons, James;
Paliwal, Kuldip;
Sattar, Abdul

Publication type:

Article

Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning.

Published in:

Scientific Reports, 2015, p. 11476, doi. 10.1038/srep11476

By:

Heffernan, Rhys;
Paliwal, Kuldip;
Lyons, James;
Dehzangi, Abdollah;
Sharma, Alok;
Wang, Jihua;
Sattar, Abdul;
Yang, Yuedong;
Zhou, Yaoqi

Publication type:

Article

Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 3, p. 482, doi. 10.1093/bib/bbw129

By:

Yuedong Yang;
Jianzhao Gao;
Jihua Wang;
Heffernan, Rhys;
Hanson, Jack;
Paliwal, Kuldip;
Yaoqi Zhou

Publication type:

Article

Single‐sequence‐based prediction of protein secondary structures and solvent accessibility by deep whole‐sequence learning.

Published in:

Journal of Computational Chemistry, 2018, v. 39, n. 26, p. 2210, doi. 10.1002/jcc.25534

By:

Heffernan, Rhys;
Paliwal, Kuldip;
Lyons, James;
Singh, Jaswinder;
Yang, Yuedong;
Zhou, Yaoqi

Publication type:

Article

Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network.

Published in:

Journal of Computational Chemistry, 2014, v. 35, n. 28, p. 2040, doi. 10.1002/jcc.23718

By:

Lyons, James;
Dehzangi, Abdollah;
Heffernan, Rhys;
Sharma, Alok;
Paliwal, Kuldip;
Sattar, Abdul;
Zhou, Yaoqi;
Yang, Yuedong

Publication type:

Article

SPIN2: Predicting sequence profiles from protein structures using deep neural networks.

Published in:

Proteins, 2018, v. 86, n. 6, p. 629, doi. 10.1002/prot.25489

By:

O'Connell, James;
Li, Zhixiu;
Hanson, Jack;
Heffernan, Rhys;
Lyons, James;
Paliwal, Kuldip;
Dehzangi, Abdollah;
Yang, Yuedong;
Zhou, Yaoqi

Publication type:

Article