Works by Heebal Kim

Results: 131

Exploring the genomes of East African Indicine cattle breeds reveals signature of selection for tropical environmental adaptation traits.

Published in:

Cogent Food & Agriculture, 2018, v. 4, n. 1, p. 1, doi. 10.1080/23311932.2018.1552552

By:

Taye, Mengistie;
Lee, Wonseok;
Caetano-Anolles, Kelsey;
Dessie, Tadelle;
Cho, Seoae;
Jong Oh, Sung;
Lee, Hak-Kyo;
Kim, Heebal

Publication type:

Article

Immunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-56554-9

By:

Nguyen, Truc Ly;
Kim, Heebal

Publication type:

Article

Selenobaculum gbiensis gen. nov. sp. nov., a new bacterium isolated from the gut microbiota of a patient with Crohn's disease.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-42017-0

By:

Yeo, Soyoung;
Park, Hyunjoon;
Kim, Heebal;
Ryu, Chang Beom;
Huh, Chul Sung

Publication type:

Article

Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0094-x

By:

Lee, Dong-Hoon;
Kim, Hye;
Chung, Han;
Lim, Jong;
Kim, Suyeon;
Kim, Se;
Ku, Hye-Jin;
Kim, Heebal;
Ryu, Sangryeol;
Choi, Sang;
Lee, Ju-Hoon

Publication type:

Article

Complete Genome Sequence of the Newly Developed Lactobacillus acidophilus Strain With Improved Thermal Adaptability.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.697351

By:

Jeon, Soomin;
Kim, Hyaekang;
Choi, Youngseok;
Cho, Seoae;
Seo, Minseok;
Kim, Heebal

Publication type:

Article

An approach of orthology detection from homologous sequences under minimum evolution.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 17, p. e110, doi. 10.1093/nar/gkn485

By:

Kim, Kyung Mo;
Sung, Samsun;
Caetano-Anollés, Gustavo;
Han, Jae Yong;
Kim, Heebal

Publication type:

Article

ASePCR: alternative splicing electronic RT–PCR in multiple tissues and organs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w681, doi. 10.1093/nar/gki407

By:

Kim, Namshin;
Lim, Dajeong;
Lee, Sanghyuk;
Kim, Heebal

Publication type:

Article

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 57, doi. 10.1186/s13059-015-0622-4

By:

Andersson, Leif;
Archibald, Alan L;
Bottema, Cynthia D;
Brauning, Rudiger;
Burgess, Shane C;
Burt, Dave W;
Casas, Eduardo;
Cheng, Hans H;
Clarke, Laura;
Couldrey, Christine;
Dalrymple, Brian P;
Elsik, Christine G;
Foissac, Sylvain;
Giuffra, Elisabetta;
Groenen, Martien A;
Hayes, Ben J;
Huang, LuSheng S;
Khatib, Hassan;
Kijas, James W;
Heebal Kim

Publication type:

Article

Joint Identification of Multiple Genetic Variants via Elastic-Net Variable Selection in a Genome-Wide Association Analysis.

Published in:

Annals of Human Genetics, 2010, v. 74, n. 5, p. 416, doi. 10.1111/j.1469-1809.2010.00597.x

By:

Seoae Cho;
Kyunga Kim;
Young Jin Kim;
Jong-Keuk Lee;
Yoon Shin Cho;
Jong-Young Lee;
Bok-Ghee Han;
Heebal Kim;
Jurg Ott;
Taesung Park

Publication type:

Article

Correction to: Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids.

Published in:

2022

By:

Jang, Jisung;
Terefe, Endashaw;
Kim, Kwondo;
Lee, Young Ho;
Belay, Gurja;
Tijjani, Abdulfatai;
Han, Jian-Lin;
Hanotte, Olivier;
Kim, Heebal

Publication type:

Correction Notice

The transcriptomic blueprint of molt in rooster using various tissues from Ginkkoridak (Korean long-tailed chicken).

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07903-9

By:

Charton, Clémentine;
Youm, Dong-Jae;
Ko, Byung June;
Seol, Donghyeok;
Kim, Bongsang;
Chai, Han-Ha;
Lim, Dajeong;
Kim, Heebal

Publication type:

Article

Deciphering the Genetic Blueprint behind Holstein Milk Proteins and Production.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 6, p. 1366, doi. 10.1093/gbe/evu102

By:

Lee, Hyun-Jeong;
Kim, Jaemin;
Lee, Taeheon;
Son, Jun Kyu;
Yoon, Ho-Baek;
Baek, Kwang-Soo;
Jeong, Jin Young;
Cho, Yong-Min;
Lee, Kyung-Tai;
Yang, Byoung-Chul;
Lim, Hyun-Joo;
Cho, Kwanghyeon;
Kim, Tae-Hun;
Kwon, Eung Gi;
Nam, Jungrye;
Kwak, Woori;
Cho, Seoae;
Kim, Heebal

Publication type:

Article

Generation of transgenic quail through germ cell-mediated germline transmission.

Published in:

FASEB Journal, 2008, v. 22, n. 7, p. 2435, doi. 10.1096/fj.07-101485

By:

Sang Su Shin;
Tae Min Kim;
Sun Young Kim;
Tae Wan Kim;
Hee Won Seo;
Seul Ki Lee;
Se Chang Kwon;
Gwan Sun Lee;
Heebal Kim;
Jeong Mook Lim;
Jae Yong Han

Publication type:

Article

Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2400-4

By:

Minseok Seo;
Caetano-Anolles, Kelsey;
Rodriguez-Zas, Sandra;
Sojeong Ka;
Jin Young Jeong;
Sungkwon Park;
Min Ji Kim;
Whan-Gook Nho;
Seoae Cho;
Heebal Kim;
Hyun-Jeong Lee

Publication type:

Article

A genome-wide scan for signatures of directional selection in domesticated pigs.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1330-x

By:

Sunjin Moon;
Tae-Hun Kim;
Kyung-Tai Lee;
Woori Kwak;
Taeheon Lee;
Si-Woo Lee;
Myung-Jick Kim;
Kyuho Cho;
Namshin Kim;
Won-Hyong Chung;
Samsun Sung;
Taesung Park;
Seoae Cho;
Groenen, Martien A. M.;
Nielsen, Rasmus;
Yuseob Kim;
Heebal Kim

Publication type:

Article

Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-240

By:

Dong-Hyun Shin;
Hyun-Jeong Lee;
Seoae Cho;
Hyeon Jeong Kim;
Jae Yeon Hwang;
Chang-Kyu Lee;
JinYoung Jeong;
Duhak Yoon;
Heebal Kim

Publication type:

Article

An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-711

By:

Jaemin Kim;
Taeheon Lee;
Tae-Hun Kim;
Kyung-Tai Lee;
Heebal Kim

Publication type:

Article

Analyses of pig genomes provide insight into porcine demography and evolution.

Published in:

Nature, 2012, v. 491, n. 7424, p. 393, doi. 10.1038/nature11622

By:

Groenen, Martien A. M.;
Archibald, Alan L.;
Uenishi, Hirohide;
Tuggle, Christopher K.;
Takeuchi, Yasuhiro;
Rothschild, Max F.;
Rogel-Gaillard, Claire;
Park, Chankyu;
Milan, Denis;
Megens, Hendrik-Jan;
Li, Shengting;
Larkin, Denis M.;
Kim, Heebal;
Frantz, Laurent A. F.;
Caccamo, Mario;
Ahn, Hyeonju;
Aken, Bronwen L.;
Anselmo, Anna;
Anthon, Christian;
Auvil, Loretta

Publication type:

Article

Genome-wide analysis of copy number variations reveals that aging processes influence body fat distribution in Korea Associated Resource (KARE) cohorts.

Published in:

Human Genetics, 2012, v. 131, n. 11, p. 1795, doi. 10.1007/s00439-012-1203-1

By:

Lee, Bo-Young;
Shin, Dong;
Cho, Seoae;
Seo, Kang-Seok;
Kim, Heebal

Publication type:

Article

Chromosome-level genome assembly of Korean holoparasitic plants, Orobanche coerulescens.

Published in:

Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03207-1

By:

Kim, Bongsang;
Jhang, So Yun;
Koh, Bomin;
Kim, Soonok;
Chi, Won-Jae;
Park, Jeong-Mi;
Lim, Chae Eun;
Hong, Yoonjee;
Kim, Heebal;
Yu, Jaewoong;
Cho, Seoae

Publication type:

Article

Chromosome-level genome assembly of Korean native cattle and pangenome graph of 14 Bos taurus assemblies.

Published in:

Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02453-z

By:

Jang, Jisung;
Jung, Jaehoon;
Lee, Young Ho;
Lee, Sanghyun;
Baik, Myunggi;
Kim, Heebal

Publication type:

Article

Synergistic Antibacterial Effects of Probiotic Lactic Acid Bacteria with Curcuma longa Rhizome Extract as Synbiotic against Cutibacterium acnes.

Published in:

Applied Sciences (2076-3417), 2020, v. 10, n. 24, p. 8955, doi. 10.3390/app10248955

By:

Kim, Jina;
Kim, Hyaekang;
Jeon, Soomin;
Jo, Jinchul;
Kim, Younghoon;
Kim, Heebal

Publication type:

Article

Genomic Characteristics of Genetic Creutzfeldt-Jakob Disease Patients with V180I Mutation and Associations with Other Neurodegenerative Disorders.

Published in:

PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157540

By:

Lee, Sol Moe;
Chung, Myungguen;
Hyeon, Jae Wook;
Jeong, Seok Won;
Ju, Young Ran;
Kim, Heebal;
Lee, Jeongmin;
Kim, SangYun;
An, Seong Soo A.;
Cho, Sung Beom;
Lee, Yeong Seon;
Kim, Su Yeon

Publication type:

Article

Identification of Differentially Evolved Genes: An Alternative Approach to Detection of Accelerated Molecular Evolution from Genome-Wide Comparative Data.

Published in:

Evolutionary Bioinformatics, 2013, n. 9, p. 285, doi. 10.4137/EBO.S12166

By:

Kyu-Won Kim;
Burt, David W.;
Kim, Heebal;
Seoae Cho

Publication type:

Article

Revealing the combined effects of lactulose and probiotic enterococci on the swine faecal microbiota using 454 pyrosequencing.

Published in:

Microbial Biotechnology, 2016, v. 9, n. 4, p. 486, doi. 10.1111/1751-7915.12370

By:

Chae, Jong Pyo;
Pajarillo, Edward Alain B.;
Oh, Ju Kyoung;
Kim, Heebal;
Kang, Dae-Kyung

Publication type:

Article

Designing a multi-epitope candidate vaccine by employing immunoinformatics approaches to control African swine fever spread.

Published in:

Journal of Biomolecular Structure & Dynamics, 2023, v. 41, n. 19, p. 10214, doi. 10.1080/07391102.2022.2153922

By:

Nguyen, Truc Ly;
Samuel Leon Magdaleno, Jorge;
Rajjak Shaikh, Abdul;
Choowongkomon, Kiattawee;
Li, Vladimir;
Lee, Youngho;
Kim, Heebal

Publication type:

Article

Estimating rates of alternative splicing in mammals and invertebrates.

Published in:

2004

By:

Heebal Kim;
Klein, Robert;
Majewski, Jacek;
Ott, Jurg

Publication type:

Letter

Author Correction: Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle.

Published in:

2022

By:

Kwon, Taehyung;
Kim, Kwondo;
Caetano-Anolles, Kelsey;
Sung, Samsun;
Cho, Seoae;
Jeong, Choongwon;
Hanotte, Olivier;
Kim, Heebal

Publication type:

Correction Notice

Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle.

Published in:

BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-021-01206-x

By:

Kwon, Taehyung;
Kim, Kwondo;
Caetano-Anolles, Kelsey;
Sung, Samsun;
Cho, Seoae;
Jeong, Choongwon;
Hanotte, Olivier;
Kim, Heebal

Publication type:

Article

Inference of Admixture Origins in Indigenous African Cattle.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 12, p. 1, doi. 10.1093/molbev/msad257

By:

Kim, Kwondo;
Kim, Donghee;
Hanotte, Olivier;
Lee, Charles;
Kim, Heebal;
Jeong, Choongwon

Publication type:

Article

Complete mitochondrial genome sequences of Korean native horse from Jeju Island: uncovering the spatio-temporal dynamics.

Published in:

Molecular Biology Reports, 2017, v. 44, n. 2, p. 233, doi. 10.1007/s11033-017-4101-8

By:

Yoon, Sook;
Kim, Jaemin;
Shin, Donghyun;
Cho, Seoae;
Kwak, Woori;
Lee, Hak-Kyo;
Park, Kyoung-Do;
Kim, Heebal

Publication type:

Article

Complete genome sequences of porcine reproductive and respiratory syndrome viruses: perspectives on their temporal and spatial dynamics.

Published in:

Molecular Biology Reports, 2013, v. 40, n. 12, p. 6843, doi. 10.1007/s11033-013-2802-1

By:

Yoon, Sook Hee;
Kim, Hyekwon;
Kim, Jaemin;
Lee, Hak-Kyo;
Park, Bongkyun;
Kim, Heebal

Publication type:

Article

Proteome analysis of chicken embryonic gonads: Identification of major proteins from cultured gonadal primordial germ cells.

Published in:

Molecular Reproduction & Development, 2005, v. 72, n. 4, p. 521, doi. 10.1002/mrd.20374

By:

Beom Ku Han;
Jin Nam Kim;
Ji Hye Shin;
Jin‐Kyoo Kim;
Do Hyun Jo;
Heebal Kim;
Jae Yong Han

Publication type:

Article

De novo emergence and potential function of human-specific tandem repeats in brain-related loci.

Published in:

Human Genetics, 2019, v. 138, n. 6, p. 661, doi. 10.1007/s00439-019-02017-5

By:

Kim, Kwondo;
Bang, Sohyun;
Yoo, DongAhn;
Kim, Heebal;
Suzuki, Shunsuke

Publication type:

Article

Discovering peptides and computational investigations of a multiepitope vaccine target Mycobacterium tuberculosis.

Published in:

Synthetic & Systems Biotechnology, 2024, v. 9, n. 3, p. 391, doi. 10.1016/j.synbio.2024.03.010

By:

Truc Ly Nguyen;
Heebal Kim

Publication type:

Article

Complete genome sequence and SNPs of Raja pulchra (Rajiformes, Rajidae) mitochondria.

Published in:

Mitochondrial DNA. Part A, 2016, v. 27, n. 4, p. 2975, doi. 10.3109/19401736.2015.1060467

By:

Hwang, Jae Yeon;
Jin, Gwi-Deuk;
Park, Jongbin;
Kim, Heebal;
Lee, Chang-Kyu;
Kwak, Woori;
Nam, Bo-Hye;
An, Cheul Min;
Park, Jung Youn;
Park, Kyu-Hyun;
Huh, Chul-Sung;
Kim, Eun Bae

Publication type:

Article

Identification of BoLA-DRB3.2 alleles in Korean native cattle (Hanwoo) and Holstein populations using a next generation sequencer.

Published in:

Animal Genetics, 2012, v. 43, n. 4, p. 438, doi. 10.1111/j.1365-2052.2011.02264.x

By:

Lee, Bo-Young;
Hur, Tai-Young;
Jung, Young-Hun;
Kim, Heebal

Publication type:

Article

Genomic insights and functional evaluation of Lacticaseibacillus paracasei EG005: a promising probiotic with enhanced antioxidant activity.

Published in:

Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1477152

By:

Jisu Kim;
Jinchul Jo;
Seoae Cho;
Heebal Kim

Publication type:

Article

Reanalysis of Ohno's hypothesis on conservation of the size of the X chromosome in mammals.

Published in:

Animal Cells & Systems, 2012, v. 16, n. 6, p. 438, doi. 10.1080/19768354.2012.724709

By:

Kim, Hyeongmin;
Lee, Taeheon;
Sung, Samsun;
Lee, Changkyu;
Kim, Heebal

Publication type:

Article

Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013.

Published in:

Gut Pathogens, 2017, v. 9, p. 1, doi. 10.1186/s13099-017-0175-z

By:

Hyun-Jin Koo;
Sojin Ahn;
Han Young Chung;
Suyeon Kim;
Kwondo Kim;
Sangryeol Ryu;
Ju-Hoon Lee;
Sang Ho Choi;
Heebal Kim

Publication type:

Article

Complete genome of Vibrio parahaemolyticus FORC014 isolated from the toothfish.

Published in:

Gut Pathogens, 2016, v. 8, p. 1, doi. 10.1186/s13099-016-0134-0

By:

Sojin Ahn;
Han Young Chung;
Sooyeon Lim;
Kwondo Kim;
Suyeon Kim;
Eun Jung Na;
Caetano-Anolles, Kelsey;
Ju-Hoon Lee;
Sangryeol Ryu;
Sang Ho Choi;
Heebal Kim

Publication type:

Article

Complete genome sequence of Vibrio vulnificus FORC_017 isolated from a patient with a hemorrhagic rash after consuming raw dotted gizzard shad.

Published in:

Gut Pathogens, 2016, v. 8, p. 1, doi. 10.1186/s13099-016-0104-6

By:

Han Young Chung;
You-Tae Kim;
Suyeon Kim;
Eun Jung Na;
Hye-Jin Ku;
Keun Hwa Lee;
Sang Taek Heo;
Sangryeol Ryu;
Heebal Kim;
Sang Ho Choi;
Ju-Hoon Lee

Publication type:

Article

Microbial community and functions associated with digestion of algal polysaccharides in the visceral tract of Haliotis discus hannai: Insights from metagenome and metatranscriptome analysis.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0205594

By:

Nam, Bo-Hye;
Jang, Jisung;
Caetano-Anolles, Kelsey;
Kim, Young-Ok;
Park, Jung Youn;
Sohn, Hawsun;
Yoon, Sook Hee;
Kim, Heebal;
Kwak, Woori

Publication type:

Article

Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0203917

By:

Yoon, Sook Hee;
Lee, Wonseok;
Ahn, Hyeonju;
Caetano-Anolles, Kelsey;
Park, Kyoung-Do;
Kim, Heebal

Publication type:

Article

Genome sequencing and protein domain annotations of Korean Hanwoo cattle identify Hanwoo-specific immunity-related and other novel genes.

Published in:

BMC Genetics, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12863-018-0623-x

By:

Caetano-Anolles, Kelsey;
Kim, Kwondo;
Kwak, Woori;
Sung, Samsun;
Kim, Heebal;
Choi, Bong-Hwan;
Lim, Dajeong

Publication type:

Article

Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef.

Published in:

BMC Genetics, 2017, v. 18, p. 1, doi. 10.1186/s12863-016-0467-1

By:

Taye, Mengistie;
Jaemin Kim;
Sook Hee Yoon;
Wonseok Lee;
Hanotte, Olivier;
Dessie, Tadelle;
Kemp, Stephen;
Mwai, Okeyo Ally;
Caetano-Anolles, Kelsey;
Seoae Cho;
Sung Jong Oh;
Hak-Kyo Lee;
Heebal Kim

Publication type:

Article

National genomic evaluation of Korean thoroughbreds through indirect racing phenotype.

Published in:

Animal Bioscience, 2022, v. 35, n. 5, p. 659, doi. 10.5713/ab.21.0409

By:

Jinwoo Lee;
Donghyun Shin;
Heebal Kim

Publication type:

Article

Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance.

Published in:

Animal Science Journal, 2017, v. 88, n. 12, p. 1889, doi. 10.1111/asj.12851

By:

Taye, Mengistie;
Lee, Wonseok;
Caetano‐Anolles, Kelsey;
Dessie, Tadelle;
Hanotte, Olivier;
Mwai, Okeyo Ally;
Kemp, Stephen;
Cho, Seoae;
Oh, Sung Jong;
Lee, Hak‐Kyo;
Kim, Heebal

Publication type:

Article

Author Correction: Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms.

Published in:

2020

By:

Nam, Bo-Hye;
Yoo, DongAhn;
Kim, Young-Ok;
Park, Jung Youn;
Shin, Younhee;
Shin, Ga-hee;
Park, Chan-Il;
Kim, Heebal;
Kwak, Woori

Publication type:

Correction Notice

Comprehensive genome and transcriptome analyses reveal genetic relationship, selection signature, and transcriptome landscape of small-sized Korean native Jeju horse.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53102-8

By:

Srikanth, Krishnamoorthy;
Kim, Nam-Young;
Park, WonCheoul;
Kim, Jae-Min;
Kim, Kwon-Do;
Lee, Kyung-Tai;
Son, Ju-Hwan;
Chai, Han-Ha;
Choi, Jung-Woo;
Jang, Gul-Won;
Kim, Heebal;
Ryu, Youn-Chul;
Nam, Jin-Wu;
Park, Jong-Eun;
Kim, Jun-Mo;
Lim, Dajeong

Publication type:

Article