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Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30680-2
By:
- Leonard, Alexander S.;
- Crysnanto, Danang;
- Fang, Zih-Hua;
- Heaton, Michael P.;
- Vander Ley, Brian L.;
- Herrera, Carolina;
- Bollwein, Heinrich;
- Bickhart, Derek M.;
- Kuhn, Kristen L.;
- Smith, Timothy P. L.;
- Rosen, Benjamin D.;
- Pausch, Hubert
Publication type:
Article
Impact of Four Ovine TMEM154 Haplotypes on Ewes during Multiyear Lentivirus Exposure.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 14966, doi. 10.3390/ijms232314966
By:
- Freking, Brad A.;
- Murphy, Tom W.;
- Chitko-McKown, Carol G.;
- Workman, Aspen M.;
- Heaton, Michael P.
Publication type:
Article
Ovine reference materials and assays for prion genetic testing.
Published in:
BMC Veterinary Research, 2010, v. 6, p. 23, doi. 10.1186/1746-6148-6-23
By:
- Heaton, Michael P.;
- Leymaster, Kreg A.;
- Kalbfleisch, Theodore S.;
- Freking, Brad A.;
- Smith, Timothy P. L.;
- Clawson, Michael L.;
- Laegreid, William W.
Publication type:
Article
Prevalence of the prion protein gene E211K variant in U.S. cattle.
Published in:
BMC Veterinary Research, 2008, v. 4, p. 1, doi. 10.1186/1746-6148-4-25
By:
- Heaton, Michael P.;
- Keele, John W.;
- Harhay, Gregory P.;
- Richt, Jürgen A.;
- Koohmaraie, Mohammad;
- Wheeler, Tommy L.;
- Shackelford, Steven D.;
- Casas, Eduardo;
- King, D. Andy;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Neibergs, Holly L.;
- Chase Jr., Chad C.;
- Kalbfleisch, Theodore S.;
- Smith, Timothy PL;
- Clawson, Michael L.;
- Laegreid, William W.
Publication type:
Article
Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 6, p. 565, doi. 10.1093/jhered/esab039
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
A Reference Genome Assembly of American Bison, Bison bison bison.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 174, doi. 10.1093/jhered/esab003
By:
- Oppenheimer, Jonas;
- Rosen, Benjamin D;
- Heaton, Michael P;
- Ley, Brian L Vander;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- Kuehn, Larry A;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Bickhart, Derek M;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Smith, Timothy P L
Publication type:
Article
A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 184, doi. 10.1093/jhered/esab002
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome.
Published in:
GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giab096
By:
- Davenport, Kimberly M;
- Bickhart, Derek M;
- Worley, Kim;
- Murali, Shwetha C;
- Salavati, Mazdak;
- Clark, Emily L;
- Cockett, Noelle E;
- Heaton, Michael P;
- Smith, Timothy P L;
- Murdoch, Brenda M;
- Rosen, Benjamin D
Publication type:
Article
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.
Published in:
GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa029
By:
- Rice, Edward S;
- Koren, Sergey;
- Rhie, Arang;
- Heaton, Michael P;
- Kalbfleisch, Theodore S;
- Hardy, Timothy;
- Hackett, Peter H;
- Bickhart, Derek M;
- Rosen, Benjamin D;
- Ley, Brian Vander;
- Maurer, Nicholas W;
- Green, Richard E;
- Phillippy, Adam M;
- Petersen, Jessica L;
- Smith, Timothy P L
Publication type:
Article
Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47015-y
By:
- Liu, Xiaodong;
- Lin, Long;
- Sinding, Mikkel-Holger S.;
- Bertola, Laura D.;
- Hanghøj, Kristian;
- Quinn, Liam;
- Garcia-Erill, Genís;
- Rasmussen, Malthe Sebro;
- Schubert, Mikkel;
- Pečnerová, Patrícia;
- Balboa, Renzo F.;
- Li, Zilong;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Pinto, Rui Resende;
- Wang, Xi;
- Kuja, Josiah;
- Brüniche-Olsen, Anna;
- Meisner, Jonas;
- Santander, Cindy G.
Publication type:
Article
SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094851
By:
- Heaton, Michael P.;
- Leymaster, Kreg A.;
- Kalbfleisch, Theodore S.;
- Kijas, James W.;
- Clarke, Shannon M.;
- McEwan, John;
- Maddox, Jillian F.;
- Basnayake, Veronica;
- Petrik, Dustin T.;
- Simpson, Barry;
- Smith, Timothy P. L.;
- Chitko-McKown, Carol G.
Publication type:
Article
Genetic Testing for <i>TMEM154</i> Mutations Associated with Lentivirus Susceptibility in Sheep.
Published in:
PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055490
By:
- Heaton, Michael P.;
- Kalbfleisch, Theodore S.;
- Petrik, Dustin T.;
- Simpson, Barry;
- Kijas, James W.;
- Clawson, Michael L.;
- Chitko-McKown, Carol G.;
- Harhay, Gregory P.;
- Leymaster, Kreg A.
Publication type:
Article
Development and Characterization of a High Density SNP Genotyping Assay for Cattle.
Published in:
PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005350
By:
- Matukumalli, Lakshmi K.;
- Lawley, Cynthia T.;
- Schnabel, Robert D.;
- Taylor, Jeremy F.;
- Allan, Mark F.;
- Heaton, Michael P.;
- O'Connell, Jeff;
- Moore, Stephen S.;
- Smith, Timothy P. L.;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.
Publication type:
Article
A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds.
Published in:
PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004668
By:
- Kijas, James W.;
- Townley, David;
- Dalrymple, Brian P.;
- Heaton, Michael P.;
- Maddox, Jillian F.;
- McGrath, Annette;
- Wilson, Peter;
- Ingersoll, Roxann G.;
- McCulloch, Russell;
- McWilliam, Sean;
- Tang, Dave;
- McEwan, John;
- Cockett, Noelle;
- Oddy, V. Hutton;
- Nicholas, Frank W.
Publication type:
Article
Association of a Bovine Prion Gene Haplotype with Atypical BSE.
Published in:
2008
By:
- Clawson, Michael L.;
- Richt, Juergen A.;
- Baron, Thierry;
- Biacabe, Anne-Gaëlle;
- Czub, Stefanie;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Laegreid, William W.
Publication type:
Case Study
Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3316-8
By:
- Clawson, Michael L.;
- Murray, Robert W.;
- Sweeney, Michael T.;
- Apley, Michael D.;
- DeDonder, Keith D.;
- Capik, Sarah F.;
- Larson, Robert L.;
- Lubbers, Brian V.;
- White, Brad J.;
- Kalbfleisch, Theodore S.;
- Schuller, Gennie;
- Dickey, Aaron M.;
- Harhay, Gregory P.;
- Heaton, Michael P.;
- Chitko-McKown, Carol G.;
- Brichta-Harhay, Dayna M.;
- Bono, James L.;
- Smith, Timothy P. L.
Publication type:
Article
Detection of bovine viral diarrhea virus in stable flies following consumption of blood from persistently infected cattle.
Published in:
Journal of Veterinary Diagnostic Investigation, 2020, v. 32, n. 1, p. 108, doi. 10.1177/1040638719898688
By:
- Carlson, Jaden M.;
- Vander Ley, Brian L.;
- Lee, Sang I.;
- Grotelueschen, Dale M.;
- Walz, Paul H.;
- Workman, Aspen M.;
- Heaton, Michael P.;
- Boxler, David J.
Publication type:
Article
Resolving Bovine viral diarrhea virus subtypes from persistently infected U.S. beef calves with complete genome sequence.
Published in:
Journal of Veterinary Diagnostic Investigation, 2016, v. 28, n. 5, p. 519, doi. 10.1177/1040638716654943
By:
- Workman, Aspen M.;
- Heaton, Michael P.;
- Harhay, Gregory P.;
- Smith, Timothy P. L.;
- Grotelueschen, Dale M.;
- Sjeklocha, David;
- Brodersen, Bruce;
- Petersen, Jessica L.;
- Chitko-McKown, Carol G.
Publication type:
Article
Association of TLR2 haplotypes encoding Q650 with reduced susceptibility to ovine Johne's disease in Turkish sheep.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86605-4
By:
- Yaman, Yalçın;
- Aymaz, Ramazan;
- Keleş, Murat;
- Bay, Veysel;
- Ün, Cemal;
- Heaton, Michael P.
Publication type:
Article
Linkage disequilibrium across six prion gene regions spanning 20 kbp in U.S. sheep.
Published in:
Mammalian Genome, 2006, v. 17, n. 11, p. 1121, doi. 10.1007/s00335-006-0042-6
By:
- Green, Benedict T.;
- Heaton, Michael P.;
- Clawson, Michael L.;
- Laegreid, William W.
Publication type:
Article
Beta-2-microglobulin haplotypes in U.S. beef cattle and association with failure of passive transfer in newborn calves.
Published in:
Mammalian Genome, 2004, v. 15, n. 3, p. 227, doi. 10.1007/s00335-003-2320-x
By:
- Clawson, Michael L.;
- Heaton, Michael P.;
- Chitko-McKown, Carol G.;
- Fox, James M.;
- Smith, Timothy P. L.;
- Snelling, Warren M.;
- Keele, John W.;
- Laegreid, William W.
Publication type:
Article
Prion gene sequence variation within diverse groups of U.S. sheep, beef cattle, and deer.
Published in:
Mammalian Genome, 2003, v. 14, n. 11, p. 765, doi. 10.1007/s00335-003-2283-y
By:
- Heaton, Michael P.;
- Leymaster, Kreg A.;
- Freking, Brad A.;
- Hawk, Deedra A.;
- Smith, Timothy P. L.;
- Keele, John W.;
- Snelling, Warren M.;
- Fox, James M.;
- Chitko-McKown, Carol G.;
- Laegreid, William W.
Publication type:
Article
Association of bovine neonatal Fc receptor a-chain gene (FCGRT) haplotypes with serum IgG concentration in newborn calves.
Published in:
Mammalian Genome, 2002, v. 13, n. 12, p. 704, doi. 10.1007/s00335-002-2219-y
By:
- Laegreid, William W.;
- Heaton, Michael P.;
- Keen, James E.;
- Grosse, William M.;
- Chitko-McKown, Carol G.;
- Smith, Timothy P.L.;
- Keele, John W.;
- Bennett, Gary L.;
- Besser, Thomas E.
Publication type:
Article
Selection and use of SNP markers for animal identification and paternity analysis in U.S. beef cattle.
Published in:
Mammalian Genome, 2002, v. 13, n. 5, p. 272, doi. 10.1007/s00335-001-2146-3
By:
- Heaton, Michael P.;
- Harhay, Gregory P.;
- Bennett, Gary L.;
- Stone, Roger T.;
- Grosse, W. Michael;
- Casas, Eduardo;
- Keele, John W.;
- Smith, Timothy P. L.;
- Chitko-McKown, Carol G.;
- Laegreid, William W.
Publication type:
Article
Interleukin-8 haplotype structure from nucleotide sequence variation in commercial populations of U.S. beef cattle.
Published in:
Mammalian Genome, 2001, v. 12, n. 3, p. 219, doi. 10.1007/s003350010269
By:
- Heaton, Michael P.;
- Chitko-McKown, Carol G.;
- Grosse, W. Michael;
- Keele, John W.;
- Keen, James E.;
- Laegreid, William W.
Publication type:
Article
Estimation of DNA sequence diversity in bovine cytokine genes.
Published in:
Mammalian Genome, 2001, v. 12, n. 1, p. 32, doi. 10.1007/s003350010223
By:
- Heaton, Michael P.;
- Grosse, William M.;
- Kappes, Steven M.;
- Keele, John W.;
- Chitko-McKown, Carol G.;
- Cundiff, Larry V.;
- Braun, Andreas;
- Little, Daniel P.;
- Laegreid, William W.
Publication type:
Article
Using whole genome sequence to compare variant callers and breed differences of US sheep.
Published in:
Frontiers in Genetics, 2023, v. 13, p. 1, doi. 10.3389/fgene.2022.1060882
By:
- Stegemiller, Morgan R.;
- Redden, Reid R.;
- Notter, David R.;
- Taylor, Todd;
- Taylor, J. Bret;
- Cockett, Noelle E.;
- Heaton, Michael P.;
- Kalbfleisch, Theodore S.;
- Murdoch, Brenda M.
Publication type:
Article
Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo.
Published in:
Molecular Ecology, 2023, v. 32, n. 8, p. 1860, doi. 10.1111/mec.16851
By:
- Quinn, Liam;
- Garcia‐Erill, Genís;
- Santander, Cindy;
- Brüniche‐Olsen, Anna;
- Liu, Xiaodong;
- Sinding, Mikkel‐Holger S.;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Pečnerová, Patrícia;
- Bertola, Laura D.;
- Hanghøj, Kristian;
- Rasmussen, Malthe Sebro;
- de Jager, Deon;
- Siegismund, Hans R.;
- Albrechtsen, Anders;
- Heller, Rasmus;
- Moltke, Ida
Publication type:
Article
Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle.
Published in:
PLoS Genetics, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pgen.1004254
By:
- Decker, Jared E.;
- McKay, Stephanie D.;
- Rolf, Megan M.;
- Kim, JaeWoo;
- Molina Alcalá, Antonio;
- Sonstegard, Tad S.;
- Hanotte, Olivier;
- Götherström, Anders;
- Seabury, Christopher M.;
- Praharani, Lisa;
- Babar, Masroor Ellahi;
- Correia de Almeida Regitano, Luciana;
- Yildiz, Mehmet Ali;
- Heaton, Michael P.;
- Liu, Wan-Sheng;
- Lei, Chu-Zhao;
- Reecy, James M.;
- Saif-Ur-Rehman, Muhammad;
- Schnabel, Robert D.;
- Taylor, Jeremy F.
Publication type:
Article
Reduced Lentivirus Susceptibility in Sheep with TMEM154 Mutations.
Published in:
PLoS Genetics, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pgen.1002467
By:
- Heaton, Michael P.;
- Clawson, Michael L.;
- Chitko-Mckown, Carol G.;
- Leymaster, Kreg A.;
- Smith, Timothy P. L.;
- Harhay, Gregory P.;
- White, Stephen N.;
- Herrmann-Hoesing, Lynn M.;
- Mousel, Michelle R.;
- Lewis, Gregory S.;
- Kalbfleisch, Theodore S.;
- Keen, James E.;
- Laegreid, William W.
Publication type:
Article
Determining Status of Five Genetic Conditions in U.S. Sheep with a Medium-Density Ovine Bead Array.
Published in:
Journal of Animal Science, 2023, v. 101, p. 41, doi. 10.1093/jas/skad281.050
By:
- Lewis, Ronald M.;
- Freking, Bradley A.;
- Heaton, Michael P.;
- Gore, Klint;
- Burke, Joan M.;
- Pejsar, Benjamin G.;
- Burgett, Russell L.;
- Brown, Daniel J.
Publication type:
Article
An Improved, High-quality Ovine Reference Genome Assembly.
Published in:
Journal of Animal Science, 2021, v. 99, p. 23, doi. 10.1093/jas/skab235.039
By:
- Davenport, Kimberly M.;
- Bickhart, Derek M.;
- Worley, Kim;
- Murali, Shwetha C.;
- Cockett, Noelle;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Murdoch, Brenda M.;
- Rosen, Benjamin D.
Publication type:
Article
Genetic diversity and connectivity of moose (Alces americanus americanus) in eastern North America.
Published in:
Conservation Genetics, 2023, v. 24, n. 2, p. 235, doi. 10.1007/s10592-022-01496-w
By:
- Rosenblatt, Elias;
- Gieder, Katherina;
- Donovan, Therese;
- Murdoch, James;
- Smith, Timothy P.L.;
- Heaton, Michael P.;
- Kalbfleisch, Theodore S.;
- Murdoch, Brenda M.;
- Bhattarai, Suraj;
- Pacht, Emory;
- Verbist, Emma;
- Basnayake, Veronica;
- McKay, Stephanie
Publication type:
Article
Genetic subgroup of small ruminant lentiviruses that infects sheep homozygous for TMEM154 frameshift deletion mutation A<sup>4Δ</sup>53.
Published in:
Veterinary Research, 2015, v. 46, n. 1, p. 1, doi. 10.1186/s13567-015-0162-7
By:
- Clawson, Michael L.;
- Redden, Reid;
- Schuller, Gennie;
- Heaton, Michael P.;
- Workman, Aspen;
- Chitko-McKown, Carol G.;
- Smith, Timothy P.L.;
- Leymaster, Kreg A.
Publication type:
Article
Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15848-y
By:
- Low, Wai Yee;
- Tearle, Rick;
- Liu, Ruijie;
- Koren, Sergey;
- Rhie, Arang;
- Bickhart, Derek M.;
- Rosen, Benjamin D.;
- Kronenberg, Zev N.;
- Kingan, Sarah B.;
- Tseng, Elizabeth;
- Thibaud-Nissen, Françoise;
- Martin, Fergal J.;
- Billis, Konstantinos;
- Ghurye, Jay;
- Hastie, Alex R.;
- Lee, Joyce;
- Pang, Andy W. C.;
- Heaton, Michael P.;
- Phillippy, Adam M.;
- Hiendleder, Stefan
Publication type:
Article
Cardiopulmonary remodeling in fattened beef cattle: a naturally occurring large animal model of obesity‐associated pulmonary hypertension with left heart disease.
Published in:
Pulmonary Circulation, 2019, v. 9, n. 1, p. 1, doi. 10.1177/2045894018796804
By:
- Krafsur, Greta M.;
- Neary, Joseph M.;
- Garry, Franklyn;
- Holt, Timothy;
- Gould, Daniel H.;
- Mason, Gary L.;
- Thomas, Milton G.;
- Enns, R. Mark;
- Tuder, Rubin M.;
- Heaton, Michael P.;
- Brown, R. Dale;
- Stenmark, Kurt R.
Publication type:
Article
Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08561-1
By:
- Low, Wai Yee;
- Rosen, Benjamin D.;
- Ren, Yan;
- Bickhart, Derek M.;
- To, Thu-Hien;
- Martin, Fergal J.;
- Billis, Konstantinos;
- Sonstegard, Tad S.;
- Sullivan, Shawn T.;
- Hiendleder, Stefan;
- Williams, John L.;
- Heaton, Michael P.;
- Smith, Timothy P. L.
Publication type:
Article

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