Works by He, Shunping

Results: 102

Analysis of genetic diversity in Glyptosternum maculatum (Sisoridae, Siluriformes) populations with AFLP markers.

Published in:

Environmental Biology of Fishes, 2009, v. 85, n. 3, p. 201, doi. 10.1007/s10641-009-9482-7

By:

Baoying Guo;
Congxin Xie;
Shunping He;
Abbas, Khalid;
Huanling Wang;
Dongmei Xiong;
Huijuan Zhang;
Xin Tong

Publication type:

Article

Threatened fishes of the world: Cranoglanis bouderius (Richardson, 1846) (Cranoglanididae).

Published in:

Environmental Biology of Fishes, 2009, v. 84, n. 2, p. 157, doi. 10.1007/s10641-008-9400-4

By:

Lei Yang;
Caixia Liu;
Shunping He

Publication type:

Article

Relaxed purifying selection of rhodopsin gene within a Chinese endemic cavefish genus Sinocyclocheilus (Pisces: Cypriniformes).

Published in:

Hydrobiologia, 2009, v. 624, n. 1, p. 139, doi. 10.1007/s10750-008-9688-2

By:

Li, Zhiqiang;
He, Shunping

Publication type:

Article

MtDNA phylogeny provides evidence of generic polyphyleticism for East Asian bagrid catfishes.

Published in:

Hydrobiologia, 2007, v. 579, n. 1, p. 147, doi. 10.1007/s10750-006-0401-z

By:

Ku, Xiying;
Peng, Zuogang;
Diogo, Rui;
He, Shunping

Publication type:

Article

Phylogenetic relationships of the Chinese sisorid catfishes: a nuclear intron versus mitochondrial gene approach.

Published in:

Hydrobiologia, 2007, v. 579, n. 1, p. 55, doi. 10.1007/s10750-006-0369-8

By:

Guo, Xianguang;
He, Shunping;
Zhang, Yaoguang

Publication type:

Article

Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebrates.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.87198

By:

Wenjie Xu;
Chenglong Zhu;
Xueli Gao;
Baosheng Wu;
Han Xu;
Mingliang Hu;
Honghui Zeng;
Xiaoni Gan;
Chenguang Feng;
Jiangmin Zheng;
Jing Bo;
Li-Sheng He;
Qiang Qiu;
Wen Wang;
Shunping He;
Kun Wang

Publication type:

Article

The first complete mitogenome of the South China deep-sea giant isopod Bathynomus sp. (Crustacea: Isopoda: Cirolanidae) allows insights into the early mitogenomic evolution of isopods.

Published in:

Ecology & Evolution (20457758), 2017, v. 7, n. 6, p. 1869, doi. 10.1002/ece3.2737

By:

Shen, Yanjun;
Kou, Qi;
Zhong, Zaixuan;
Li, Xinzheng;
He, Lisheng;
He, Shunping;
Gan, Xiaoni

Publication type:

Article

Genetic diversity and evolutionary history of the Schizothorax species complex in the Lancang River (upper Mekong).

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 17, p. 6023, doi. 10.1002/ece3.2319

By:

Chen, Weitao;
Shen, Yanjun;
Gan, Xiaoni;
Wang, Xuzhen;
He, Shunping

Publication type:

Article

Comparative population structure of two dominant species, Shinkaia crosnieri (Munidopsidae: Shinkaia) and Bathymodiolus platifrons (Mytilidae: Bathymodiolus), inhabiting both deep-sea vent and cold seep inferred from mitochondrial multi-genes.

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 11, p. 3571, doi. 10.1002/ece3.2132

By:

Shen, Yanjun;
Kou, Qi;
Chen, Weitao;
He, Shunping;
Yang, Mei;
Li, Xinzheng;
Gan, Xiaoni

Publication type:

Article

Genetic structure and historical demography of Schizothorax nukiangensis (Cyprinidae) in continuous habitat.

Published in:

Ecology & Evolution (20457758), 2015, v. 5, n. 4, p. 984, doi. 10.1002/ece3.1413

By:

Chen, Weitao;
Du, Kang;
He, Shunping

Publication type:

Article

Analysis of Multiplicity of Hypoxia-Inducible Factors in the Evolution of Triplophysa Fish (Osteichthyes: Nemacheilinae) Reveals Hypoxic Environments Adaptation to Tibetan Plateau.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00433

By:

Chen, Juan;
Shen, Yanjun;
Wang, Jing;
Ouyang, Gang;
Kang, Jingliang;
Lv, Wenqi;
Yang, Liandong;
He, Shunping

Publication type:

Article

Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes.

Published in:

Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.01283

By:

Yang, Liandong;
Jiang, Haifeng;
Chen, Juan;
Lei, Yi;
Sun, Ning;
Lv, Wenqi;
Near, Thomas J.;
He, Shunping

Publication type:

Article

Hox Genes of the Japanese Eel Anguilla japonica and Hox Cluster Evolution in Teleosts.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2010, v. 314B, n. 2, p. 135, doi. 10.1002/jez.b.21318

By:

BAOCHENG GUO;
XIAONI GAN;
SHUNPING HE

Publication type:

Article

Distinct Evolutionary Patterns Between Two Duplicated Color Vision Genes Within Cyprinid Fishes.

Published in:

Journal of Molecular Evolution, 2009, v. 69, n. 4, p. 346, doi. 10.1007/s00239-009-9283-9

By:

Zhiqiang Li;
Xiaoni Gan;
Shunping He

Publication type:

Article

An inventory of invasive alien species in China.

Published in:

NeoBiota, 2012, n. 15, p. 1, doi. 10.3897/neobiota.15.3575

By:

Haigen Xu;
Sheng Qiang;
Genovesi, Piero;
Hui Ding;
Jun Wu;
Ling Meng;
Zhengmin Han;
Jinlai Miao;
Baishi Hu;
Jiangying Guo;
Hongying Sun;
Cheng Huang;
Juncheng Lei;
Zhifang Le;
Xiaoping Zhang;
Shunping He;
Yi Wu;
Zhou Zheng;
Lian Chen;
Jarošík, Vojtěch

Publication type:

Article

Evolutionary patterns of RNA-based gene duplicates in Caenorhabditis nematodes coincide with their genomic features.

Published in:

BMC Research Notes, 2012, v. 5, n. 1, p. 398, doi. 10.1186/1756-0500-5-398

By:

Ming Zou;
Guoxiu Wang;
Shunping He

Publication type:

Article

Evidence of high-altitude adaptation in the glyptosternoid fish, Creteuchiloglanis macropterus from the Nujiang River obtained through transcriptome analysis.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-1074-0

By:

Jingliang Kang;
Xiuhui Ma;
Shunping He

Publication type:

Article

Phylogeographic structure, cryptic speciation and demographic history of the sharpbelly (Hemiculter leucisculus), a freshwater habitat generalist from southern China.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-1058-0

By:

Weitao Chen;
Zaixuan Zhong;
Wei Dai;
Qi Fan;
Shunping He

Publication type:

Article

Inverse PCR-Based Method for Isolating Novel SINEs from Genome.

Published in:

Molecular Biotechnology, 2014, v. 56, n. 4, p. 296, doi. 10.1007/s12033-013-9708-y

By:

Han, Yawei;
Chen, Liping;
Guan, Lihong;
He, Shunping

Publication type:

Article

Single-cell RNA sequencing of zebrafish olfactory epithelium reveals cellular heterogeneity and responses to a conspecific alarm substance.

Published in:

Water Biology & Security, 2025, v. 4, n. 2, p. 1, doi. 10.1016/j.watbs.2024.100324

By:

Wenjun Chen;
Haifeng Jiang;
Cheng Wang;
Zufa Ding;
Dan Yu;
Yang Liu;
Shunping He;
Liandong Yang

Publication type:

Article

Lipidome and proteome analyses provide insights into Mariana Trench Snailfish (Pseudoliparis swirei) adaptation to the hadal zone.

Published in:

Water Biology & Security, 2024, v. 3, n. 4, p. 1, doi. 10.1016/j.watbs.2024.100295

By:

Han Xu;
Chengchi Fang;
Cheng Wang;
Xiaoni Gan;
Shunping He

Publication type:

Article

The use of single-cell sequencing to reveal stem/progenitor cells in animal organ regeneration.

Published in:

Water Biology & Security, 2023, v. 2, n. 1, p. 1, doi. 10.1016/j.watbs.2022.100081

By:

Suxiang Lu;
Schneider, Igor;
Honghui Zeng;
Shunping He

Publication type:

Article

Expansion of vomeronasal receptor genes (OlfC) in the evolution of fright reaction in Ostariophysan fishes.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0479-2

By:

Yang, Liandong;
Jiang, Haifeng;
Wang, Ying;
Lei, Yi;
Chen, Juan;
Sun, Ning;
Lv, Wenqi;
Wang, Cheng;
Near, Thomas J.;
He, Shunping

Publication type:

Article

Genomic and functional evidence reveals convergent evolution in fishes on the Tibetan Plateau.

Published in:

Molecular Ecology, 2021, v. 30, n. 22, p. 5752, doi. 10.1111/mec.16171

By:

Yang, Liandong;
Wang, Ying;
Sun, Ning;
Chen, Juan;
He, Shunping

Publication type:

Article

Genetic Adaptation of Schizothoracine Fish to the Phased Uplifting of the Qinghai-Tibetan Plateau.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 4, p. 1267, doi. 10.1534/g3.116.038406

By:

Dongsheng Zhang;
Mengchao Yu;
Peng Hu;
Sihua Peng;
Yimeng Liu;
Weiwen Li;
Congcong Wang;
Shunping He;
Wanying Zhai;
Qianghua Xu;
Liangbiao Chen

Publication type:

Article

Divergent DNA Methylation Provides Insights into the Evolution of Duplicate Genes in Zebrafish.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 11, p. 3581, doi. 10.1534/g3.116.032243

By:

Zaixuan Zhong;
Kang Du;
Qian Yu;
Yong E. Zhang;
Shunping He

Publication type:

Article

Comprehensive Transcriptome Analysis of Six Catfish Species from an Altitude Gradient Reveals Adaptive Evolution in Tibetan Fishes.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 1, p. 141, doi. 10.1534/g3.115.024448

By:

Xiuhui Ma;
Wei Dai;
Jingliang Kang;
Liandong Yang;
Shunping He

Publication type:

Article

Massive Loss of Olfactory Receptors But Not Trace Amine-Associated Receptors in the World's Deepest-Living Fish (Pseudoliparis swirei).

Published in:

Genes, 2019, v. 10, n. 11, p. 910, doi. 10.3390/genes10110910

By:

Jiang, Haifeng;
Du, Kang;
Gan, Xiaoni;
Yang, Liandong;
He, Shunping

Publication type:

Article

Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics.

Published in:

SCIENCE CHINA Life Sciences, 2012, v. 55, n. 9, p. 761, doi. 10.1007/s11427-012-4366-z

By:

Wang, XuZhen;
Gan, XiaoNi;
Li, JunBing;
Mayden, Richard;
He, ShunPing

Publication type:

Article

Phylogenetic relationships and estimation of divergence times among Sisoridae catfishes.

Published in:

SCIENCE CHINA Life Sciences, 2012, v. 55, n. 4, p. 312, doi. 10.1007/s11427-012-4305-z

By:

Yu, MeiLing;
He, ShunPing

Publication type:

Article

Molecular variation and evolution of the tyrosine kinase domains of insulin receptor IRa and IRb genes in Cyprinidae.

Published in:

SCIENCE CHINA Life Sciences, 2011, v. 54, n. 7, p. 626, doi. 10.1007/s11427-011-4189-3

By:

Kong, XiangHui;
Wang, XuZhen;
He, ShunPing

Publication type:

Article

Olfactory receptor gene family evolution in stickleback and medaka fishes.

Published in:

SCIENCE CHINA Life Sciences, 2010, v. 53, n. 2, p. 257, doi. 10.1007/s11427-010-0025-4

By:

Chen, Ming;
Peng, ZuoGang;
He, ShunPing

Publication type:

Article

Molecular Mechanisms of the Convergent Adaptation of Bathypelagic and Abyssopelagic Fishes.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 8, p. 1, doi. 10.1093/gbe/evac109

By:

Bo, Jing;
Xu, Han;
Lv, Wenqi;
Wang, Cheng;
He, Shunping;
Yang, Liandong

Publication type:

Article

De Novo Genome Assembly of Limpet Bathyacmaea lactea (Gastropoda: Pectinodontidae): The First Reference Genome of a Deep-Sea Gastropod Endemic to Cold Seeps.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 6, p. 905, doi. 10.1093/gbe/evaa100

By:

Liu, Ruoyu;
Wang, Kun;
Liu, Jun;
Xu, Wenjie;
Zhou, Yang;
Zhu, Chenglong;
Wu, Baosheng;
Li, Yongxin;
Wang, Wen;
He, Shunping;
Feng, Chenguang;
Zhang, Haibin

Publication type:

Article

Transcriptome-Wide Patterns of the Genetic and Expression Variations in Two Sympatric Schizothoracine Fishes in a Tibetan Plateau Glacier Lake.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 1, p. 3725, doi. 10.1093/gbe/evz276

By:

Chen, Juan;
Yang, Liandong;
Zhang, Renyi;
Uebbing, Severin;
Zhang, Cunfang;
Jiang, Haifeng;
Lei, Yi;
Lv, Wenqi;
Tian, Fei;
Zhao, Kai;
He, Shunping

Publication type:

Article

Both Male-Biased and Female-Biased Genes Evolve Faster in Fish Genomes.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 11, p. 3433, doi. 10.1093/gbe/evw239

By:

Liandong Yang;
Zhaolei Zhang;
Shunping He

Publication type:

Article

Evidence for Adaptation to the Tibetan Plateau Inferred from Tibetan Loach Transcriptomes.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 11, p. 2970, doi. 10.1093/gbe/evv192

By:

Ying Wang;
Liandong Yang;
Kun Zhou;
Yanping Zhang;
Zhaobin Song;
Shunping He

Publication type:

Article

Comprehensive Transcriptome Analysis Reveals Accelerated Genic Evolution in a Tibet Fish, Gymnodiptychus pachycheilus.

Published in:

Genome Biology & Evolution, 2014, v. 7, n. 1, p. 251, doi. 10.1093/gbe/evu279

By:

Yang, Liandong;
Wang, Ying;
Zhang, Zhaolei;
He, Shunping

Publication type:

Article

Isolation and characterization of microsatellite markers in a highland fish, Pareuchiloglanis sinensis (Siluriformes: Sisoridae) by next-generation sequencing.

Published in:

Journal of Genetics, 2018, v. 97, n. 1, p. 111, doi. 10.1007/s12041-018-0997-6

By:

Chen, Weitao;
He, Shunping

Publication type:

Article

Phylogenomic analyses reveal a molecular signature linked to subterranean adaptation in rodents.

Published in:

BMC Evolutionary Biology, 2015, v. 15, p. 1, doi. 10.1186/s12862-015-0564-1

By:

Kang Du;
Liandong Yang;
Shunping He

Publication type:

Article

Biogeographic history and high-elevation adaptations inferred from the mitochondrial genome of Glyptosternoid fishes (Sisoridae, Siluriformes) from the southeastern Tibetan Plateau.

Published in:

BMC Evolutionary Biology, 2015, v. 15, p. 233, doi. 10.1186/s12862-015-0516-9

By:

Xiuhui Ma;
Jingliang Kang;
Weitao Chen;
Chuanjiang Zhou;
Shunping He

Publication type:

Article

Analysis of hypoxia-inducible factor alpha polyploidization reveals adaptation to Tibetan plateau in the evolution of schizothoracine fish.

Published in:

BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12862-014-0192-1

By:

Lihong Guan;
Wei Chi;
Wuhan Xiao;
Liangbiao Chen;
Shunping He

Publication type:

Article

Hsien-wen Wu: a founder of the studies of ichthyology in China.

Published in:

Protein & Cell, 2023, v. 14, n. 7, p. 473, doi. 10.1093/procel/pwac054

By:

He, Shunping;
Chen, Yiyu

Publication type:

Article

Comparative iTRAQ proteomics revealed proteins associated with lobed fin regeneration in Bichirs.

Published in:

Proteome Science, 2019, v. 17, n. 1, p. N.PAG, doi. 10.1186/s12953-019-0153-0

By:

Lu, Suxiang;
Xiong, Qian;
Du, Kang;
Gan, Xiaoni;
Wang, Xuzhen;
Yang, Liandong;
Wang, Ying;
Ge, Feng;
He, Shunping

Publication type:

Article

Multiple source genes of HAmo SINE actively expanded and ongoing retroposition in cyprinid genomes relying on its partner LINE.

Published in:

BMC Evolutionary Biology, 2010, v. 10, p. 115, doi. 10.1186/1471-2148-10-115

By:

Chaobo Tong;
Xiaoni Gan;
Shunping He

Publication type:

Article

Recent and Recurrent Autopolyploidization Fueled Diversification of Snow Carp on the Tibetan Plateau.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 11, p. 1, doi. 10.1093/molbev/msae221

By:

Li, Xinxin;
Wang, Min;
Zou, Ming;
Guan, Xiaotong;
Xu, Shaohua;
Chen, Weitao;
Wang, Chongnv;
Chen, Yiyu;
He, Shunping;
Guo, Baocheng

Publication type:

Article

The Role of Introgression During the Radiation of Endemic Fishes Adapted to Living at Extreme Altitudes in the Tibetan Plateau.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 6, p. 1, doi. 10.1093/molbev/msad129

By:

Qian, Yuting;
Meng, Minghui;
Zhou, Chaowei;
Liu, Haiping;
Jiang, Haifeng;
Xu, Youwei;
Chen, Wenjun;
Ding, Zufa;
Liu, Yang;
Gong, Xiong;
Wang, Cheng;
Lei, Yi;
Wang, Tai;
Wang, Ying;
Gan, Xiaoni;
Meyer, Axel;
He, Shunping;
Yang, Liandong

Publication type:

Article

Multi-omics Investigation of Freeze Tolerance in the Amur Sleeper, an Aquatic Ectothermic Vertebrate.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad040

By:

Jiang, Haifeng;
Lv, Wenqi;
Wang, Ying;
Qian, Yuting;
Wang, Cheng;
Sun, Ning;
Fang, Chengchi;
Irwin, David M;
Gan, Xiaoni;
He, Shunping;
Yang, Liandong

Publication type:

Article

The Genomes of Two Billfishes Provide Insights into the Evolution of Endothermy in Teleosts.

Published in:

Molecular Biology & Evolution, 2021, v. 38, n. 6, p. 2413, doi. 10.1093/molbev/msab035

By:

Wu, Baosheng;
Feng, Chenguang;
Zhu, Chenglong;
Xu, Wenjie;
Yuan, Yuan;
Hu, Mingliang;
Yuan, Ke;
Li, Yongxin;
Ren, Yandong;
Zhou, Yang;
Jiang, Haifeng;
Qiu, Qiang;
Wang, Wen;
He, Shunping;
Wang, Kun

Publication type:

Article

Construction of a high-density genetic linkage map and mapping of quantitative trait loci for growth-related traits in silver carp (Hypophthalmichthys molitrix).

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53469-8

By:

Wang, Xinhua;
Liu, Haiyang;
Pang, Meixia;
Fu, Beide;
Yu, Xiaomu;
He, Shunping;
Tong, Jingou

Publication type:

Article