Works by Haynes, Matthew

Results: 29
    1

    The Marine Viromes of Four Oceanic Regions.

    Published in:
    PLoS Biology, 2006, v. 4, n. 11, p. 2121, doi. 10.1371/journal.pbio.0040368
    By:
    • Angly, Florent E.;
    • Felts, Ben;
    • Breitbart, Mya;
    • Salamon, Peter;
    • Edwards, Robert A.;
    • Carlson, Craig;
    • Chan, Amy M.;
    • Haynes, Matthew;
    • Kelley, Scott;
    • Hong Liu;
    • Mahaffy, Joseph M.;
    • Mueller, Jennifer E.;
    • Nulton, Jim;
    • Olson, Robert;
    • Parsons, Rachel;
    • Rayhawk, Steve;
    • Suttle, Curtis A.;
    • Rohwer, Forest
    Publication type:
    Article
    2

    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    3

    High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
    By:
    • McIlroy, Simon J.;
    • Lapidus, Alla;
    • Thomsen, Trine R.;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor;
    • Verbarg, Susanne;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Nielsen, Per H.
    Publication type:
    Article
    4

    High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
    By:
    • Laviad, Sivan;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Lang, Elke;
    • Rohde, Manfred;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    5

    Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
    By:
    • Gao, Xiao-Yang;
    • Zhi, Xiao-Yang;
    • Li, Hong-Wei;
    • Yu Zhou;
    • Alla Lapidus;
    • James Han;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Tindall, Brian J.;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    6

    High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1020, doi. 10.4056/sigs.5449586
    By:
    • Zhou, Yu;
    • Li, Rui;
    • Gao, Xiao-Yang;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Rohde, Manfred;
    • Mavromatis, Konstantinos;
    • Tindall, Brian;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Li, Wen-Jun
    Publication type:
    Article
    7
    8

    The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.

    Published in:
    PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000593
    By:
    • Angly, Florent E.;
    • Willner, Dana;
    • Prieto-Davó, Alejandra;
    • Edwards, Robert A.;
    • Schmieder, Robert;
    • Vega-Thurber, Rebecca;
    • Antonopoulos, Dionysios A.;
    • Barott, Katie;
    • Cottrell, Matthew T.;
    • Desnues, Christelle;
    • Dinsdale, Elizabeth A.;
    • Furlan, Mike;
    • Haynes, Matthew;
    • Henn, Matthew R.;
    • Yongfei Hu;
    • Kirchman, David L.;
    • McDole, Tracey;
    • McPherson, John D.;
    • Meyer, Folker;
    • Miller, R. Michael
    Publication type:
    Article
    9
    10

    Photosystem I gene cassettes are present in marine virus genomes.

    Published in:
    Nature, 2009, v. 461, n. 7261, p. 258, doi. 10.1038/nature08284
    By:
    • Sharon, Itai;
    • Alperovitch, Ariella;
    • Rohwer, Forest;
    • Haynes, Matthew;
    • Glaser, Fabian;
    • Atamna-Ismaeel, Nof;
    • Pinter, Ron Y.;
    • Partensky, Frédéric;
    • Koonin, Eugene V.;
    • Wolf, Yuri I.;
    • Nelson, Nathan;
    • Béjà, Oded
    Publication type:
    Article
    11

    Functional metagenomic profiling of nine biomes.

    Published in:
    2008
    By:
    • Dinsdale, Elizabeth A.;
    • Edwards, Robert A.;
    • Hall, Dana;
    • Angly, Florent;
    • Breitbart, Mya;
    • Brulc, Jennifer M.;
    • Furlan, Mike;
    • Desnues, Christelle;
    • Haynes, Matthew;
    • Linlin Li;
    • McDaniel, Lauren;
    • Moran, Mary Ann;
    • Nelson, Karen E.;
    • Nilsson, Christina;
    • Olson, Robert;
    • Paul, John;
    • Brito, Beltran Rodriguez;
    • Yijun Ruan;
    • Swan, Brandon K.;
    • Stevens, Rick
    Publication type:
    Correction Notice
    12
    13
    14

    Viral and microbial community dynamics in four aquatic environments.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 6, p. 739, doi. 10.1038/ismej.2010.1
    By:
    • Rodriguez-Brito, Beltran;
    • Li, LinLin;
    • Wegley, Linda;
    • Furlan, Mike;
    • Angly, Florent;
    • Breitbart, Mya;
    • Buchanan, John;
    • Desnues, Christelle;
    • Dinsdale, Elizabeth;
    • Edwards, Robert;
    • Felts, Ben;
    • Haynes, Matthew;
    • Liu, Hong;
    • Lipson, David;
    • Mahaffy, Joseph;
    • Martin-Cuadrado, Anna Belen;
    • Mira, Alex;
    • Nulton, Jim;
    • Pašić, Lejla;
    • Rayhawk, Steve
    Publication type:
    Article
    15
    16
    17

    Functional metagenomic profiling of nine biomes.

    Published in:
    Nature, 2008, v. 452, n. 7187, p. 629, doi. 10.1038/nature06810
    By:
    • Dinsdale, Elizabeth A.;
    • Edwards, Robert A.;
    • Hall, Dana;
    • Angly, Florent;
    • Breitbart, Mya;
    • Brulc, Jennifer M.;
    • Furlan, Mike;
    • Desnues, Christelle;
    • Haynes, Matthew;
    • Linlin Li;
    • McDaniel, Lauren;
    • Moran, Mary Ann;
    • Nelson, Karen E.;
    • Nilsson, Christina;
    • Olson, Robert;
    • Paul, John;
    • Brito, Beltran Rodriguez;
    • Yijun Ruan;
    • Swan, Brandon K.;
    • Stevens, Rick
    Publication type:
    Article
    18

    Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

    Published in:
    Nature, 2008, v. 452, n. 7185, p. 340, doi. 10.1038/nature06735
    By:
    • Desnues, Christelle;
    • Rodriguez-Brito, Beltran;
    • Rayhawk, Steve;
    • Kelley, Scott;
    • Tran, Tuong;
    • Haynes, Matthew;
    • Hong Liu;
    • Furlan, Mike;
    • Wegley, Linda;
    • Chau, Betty;
    • Ruan, Yijun;
    • Hall, Dana;
    • Angly, Florent E.;
    • Edwards, Robert A.;
    • Linlin Li;
    • Thurber, Rebecca Vega;
    • Reid, R. Pamela;
    • Siefert, Janet;
    • Souza, Valeria;
    • Valentine, David L.
    Publication type:
    Article
    19

    Species-Specific Viromes in the Ancestral Holobiont Hydra.

    Published in:
    PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109952
    By:
    • Grasis, Juris A.;
    • Lachnit, Tim;
    • Anton-Erxleben, Friederike;
    • Lim, Yan Wei;
    • Schmieder, Robert;
    • Fraune, Sebastian;
    • Franzenburg, Sören;
    • Insua, Santiago;
    • Machado, GloriaMay;
    • Haynes, Matthew;
    • Little, Mark;
    • Kimble, Robert;
    • Rosenstiel, Philip;
    • Rohwer, Forest L.;
    • Bosch, Thomas C. G.
    Publication type:
    Article
    20
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    24

    The Airborne Metagenome in an Indoor Urban Environment.

    Published in:
    PLoS ONE, 2008, v. 3, n. 4, p. 1, doi. 10.1371/journal.pone.0001862
    By:
    • Tringe, Susannah G.;
    • Tao Zhang;
    • Liu, Xuguo;
    • Yiting Yu;
    • Wah Heng Lee;
    • Jennifer Yap;
    • Fei Yao;
    • Sim Tiow Suan;
    • Seah Keng Ing;
    • Haynes, Matthew;
    • Rohwer, Forest;
    • Chia Lin Wei;
    • Tan, Patrick;
    • Bristow, James;
    • Rubin, Edward M.;
    • Yijun Ruan
    Publication type:
    Article
    25

    Microbial Ecology of Four Coral Atolls in the Northern Line Islands.

    Published in:
    PLoS ONE, 2008, v. 3, n. 2, p. 1, doi. 10.1371/journal.pone.0001584
    By:
    • Dinsdale, Elizabeth A.;
    • Pantos, Olga;
    • Smriga, Steven;
    • Edwards, Robert A.;
    • Angly, Florent;
    • Wegley, Linda;
    • Hatay, Mark;
    • Hall, Dana;
    • Brown, Elysa;
    • Haynes, Matthew;
    • Krause, Lutz;
    • Sala, Enric;
    • Sandin, Stuart A.;
    • Thurber, Rebecca Vega;
    • Willis, Bette L.;
    • Azam, Farooq;
    • Knowlton, Nancy;
    • Rohwer, Forest
    Publication type:
    Article
    26

    Cystic Fibrosis Therapy: A Community Ecology Perspective.

    Published in:
    American Journal of Respiratory Cell & Molecular Biology, 2013, v. 48, n. 2, p. 150, doi. 10.1165/rcmb.2012-0059PS
    By:
    • Conrad, Douglas;
    • Haynes, Matthew;
    • Salamon, Peter;
    • Rainey, Paul B.;
    • Youle, Merry;
    • Rohwer, Forest
    Publication type:
    Article
    27
    28

    Using pyrosequencing to shed light on deep mine microbial ecology.

    Published in:
    BMC Genomics, 2006, v. 7, p. 57, doi. 10.1186/1471-2164-7-57
    By:
    • Edwards, Robert A;
    • Rodriguez-Brito, Beltran;
    • Wegley, Linda;
    • Haynes, Matthew;
    • Breitbart, Mya;
    • Peterson, Dean M;
    • Saar, Martin O;
    • Alexander, Scott;
    • Alexander Jr, E Calvin;
    • Rohwer, Forest
    Publication type:
    Article
    29

    Classification of Lake Michigan snow days for estimation of the lake‐effect contribution to the downward trend in November snowfall.

    Published in:
    International Journal of Climatology, 2020, v. 40, n. 13, p. 5656, doi. 10.1002/joc.6542
    By:
    • Clark, Craig A.;
    • Goebbert, Kevin H.;
    • Ganesh‐Babu, Bharath;
    • Young, Allison M.;
    • Heinlein, Kaitlyn N.;
    • Casas, Eleanor G.;
    • VanDe Guchte, Andrew P.;
    • Krull, Alexander J.;
    • Sefcovic, Zachary P.;
    • Connelly, Ryan J.;
    • Caruthers, Alexandra L.;
    • Haynes, Matthew;
    • Zigner, Katelyn M.;
    • Fingerle, Sarah L.;
    • Cade, Evan P.;
    • DeRolf, Timothy M.;
    • Schletz, Samantha M.
    Publication type:
    Article