Works by Hastie, Alex R.

Results: 19

Comprehensive definition of genome features in Spirodela polyrhiza by high-depth physical mapping and short-read DNA sequencing strategies.

Published in:

Plant Journal, 2017, v. 89, n. 3, p. 617, doi. 10.1111/tpj.13400

By:

Michael, Todd P.;
Bryant, Douglas;
Gutierrez, Ryan;
Borisjuk, Nikolai;
Chu, Philomena;
Zhang, Hanzhong;
Xia, Jing;
Zhou, Junfei;
Peng, Hai;
El Baidouri, Moaine;
Hallers, Boudewijn;
Hastie, Alex R.;
Liang, Tiffany;
Acosta, Kenneth;
Gilbert, Sarah;
McEntee, Connor;
Jackson, Scott A.;
Mockler, Todd C.;
Zhang, Weixiong;
Lam, Eric

Publication type:

Article

Analytic Validation of Optical Genome Mapping in Hematological Malignancies.

Published in:

Biomedicines, 2023, v. 11, n. 12, p. 3263, doi. 10.3390/biomedicines11123263

By:

Pang, Andy W. C.;
Kosco, Karena;
Sahajpal, Nikhil S.;
Sridhar, Arthi;
Hauenstein, Jen;
Clifford, Benjamin;
Estabrook, Joey;
Chitsazan, Alex D.;
Sahoo, Trilochan;
Iqbal, Anwar;
Kolhe, Ravindra;
Raca, Gordana;
Hastie, Alex R.;
Chaubey, Alka

Publication type:

Article

Yeast two-hybrid interaction partner screening through in vivo Cre-mediated Binary Interaction Tag generation.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 21, p. e141, doi. 10.1093/nar/gkm894

By:

Hastie, Alex R.;
Pruitt, Steven C.

Publication type:

Article

Identification of Somatic Structural Variants in Solid Tumors by Optical Genome Mapping.

Published in:

Journal of Personalized Medicine, 2021, v. 11, n. 2, p. 142, doi. 10.3390/jpm11020142

By:

Goldrich, David Y.;
LaBarge, Brandon;
Chartrand, Scott;
Zhang, Lijun;
Sadowski, Henry B.;
Zhang, Yang;
Pham, Khoa;
Way, Hannah;
Lai, Chi-Yu Jill;
Pang, Andy Wing Chun;
Clifford, Benjamin;
Hastie, Alex R.;
Oldakowski, Mark;
Goldenberg, David;
Broach, James R.;
Fantozzi, Silvia

Publication type:

Article

Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.119.400995

By:

Soifer, Ilya;
Fong, Nicole L.;
Yi, Nelda;
Ireland, Andrea T.;
Lam, Irene;
Sooknah, Matthew;
Paw, Jonathan S.;
Peluso, Paul;
Concepcion, Gregory T.;
Rank, David;
Hastie, Alex R.;
Jojic, Vladimir;
Graham Ruby, J.;
Botstein, David;
Roy, Margaret A.

Publication type:

Article

Optical Genome Mapping and Single Nucleotide Polymorphism Microarray: An Integrated Approach for Investigating Products of Conception.

Published in:

Genes, 2022, v. 13, n. 4, p. 643, doi. 10.3390/genes13040643

By:

Sahajpal, Nikhil Shri;
Mondal, Ashis K.;
Ananth, Sudha;
Pundkar, Chetan;
Jones, Kimya;
Williams, Colin;
Fee, Timothy;
Weissman, Amanda;
Tripodi, Giuseppe;
Oza, Eesha;
Gavrilova-Jordan, Larisa;
Omar, Nivin;
Hastie, Alex R.;
DuPont, Barbara R.;
Layman, Lawrence;
Chaubey, Alka;
Kolhe, Ravindra

Publication type:

Article

Structural forms of the human amylase locus and their relationships to SNPs, haplotypes and obesity.

Published in:

Nature Genetics, 2015, v. 47, n. 8, p. 921, doi. 10.1038/ng.3340

By:

Usher, Christina L;
Pato, Carlos N;
Pato, Michele T;
McCarthy, Mark I;
Altshuler, David M;
Handsaker, Robert E;
McCarroll, Steven A;
Esko, Tõnu;
Tuke, Marcus A;
Weedon, Michael N;
Frayling, Timothy M;
Hastie, Alex R;
Cao, Han;
Moon, Jennifer E;
Hirschhorn, Joel N;
Kashin, Seva;
Fuchsberger, Christian;
Boehnke, Michael;
Metspalu, Andres

Publication type:

Article

Genetic Predisposition to Neurological Complications in Patients with COVID-19.

Published in:

2023

By:

Sahajpal, Nikhil Shri;
Hastie, Alex R.;
Schieck, Maximilian;
Mondal, Ashis K.;
Felde, Marc;
van der Made, Caspar I.;
Chou, Janet S.;
Randolph, Adrienne G.;
Illig, Thomas;
Zody, Michael C.;
Brownstein, Catherine A.;
Beggs, Alan H.;
Hoischen, Alexander;
Chaubey, Alka;
Kolhe, Ravindra

Publication type:

Case Study

Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.

Published in:

Nature Communications, 2016, v. 7, n. 2, p. 10164, doi. 10.1038/ncomms10164

By:

Rosenfeld, Jeffrey A.;
Reeves, Darryl;
Brugler, Mercer R.;
Narechania, Apurva;
Simon, Sabrina;
Durrett, Russell;
Foox, Jonathan;
Shianna, Kevin;
Schatz, Michael C.;
Gandara, Jorge;
Afshinnekoo, Ebrahim;
Lam, Ernest T.;
Hastie, Alex R.;
Chan, Saki;
Cao, Han;
Saghbini, Michael;
Kentsis, Alex;
Planet, Paul J.;
Kholodovych, Vladyslav;
Tessler, Michael

Publication type:

Article

Detection of Genomic Structural Variations Associated with Drug Sensitivity and Resistance in Acute Leukemia.

Published in:

Cancers, 2024, v. 16, n. 2, p. 418, doi. 10.3390/cancers16020418

By:

Finlay, Darren;
Murad, Rabi;
Hong, Karl;
Lee, Joyce;
Pang, Andy Wing Chun;
Lai, Chi-Yu;
Clifford, Benjamin;
Burian, Carol;
Mason, James;
Hastie, Alex R.;
Yin, Jun;
Vuori, Kristiina

Publication type:

Article

Clinical Utility of Optical Genome Mapping and 523-Gene Next Generation Sequencing Panel for Comprehensive Evaluation of Myeloid Cancers.

Published in:

Cancers, 2023, v. 15, n. 12, p. 3214, doi. 10.3390/cancers15123214

By:

Sahajpal, Nikhil Shri;
Mondal, Ashis K.;
Singh, Harmanpreet;
Vashisht, Ashutosh;
Ananth, Sudha;
Saul, Daniel;
Hastie, Alex R.;
Hilton, Benjamin;
DuPont, Barbara R.;
Savage, Natasha M.;
Kota, Vamsi;
Chaubey, Alka;
Cortes, Jorge E.;
Kolhe, Ravindra

Publication type:

Article

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

Published in:

Plant Biotechnology Journal, 2016, v. 14, n. 7, p. 1523, doi. 10.1111/pbi.12513

By:

Staňková, Helena;
Hastie, Alex R.;
Chan, Saki;
Vrána, Jan;
Tulpová, Zuzana;
Kubaláková, Marie;
Visendi, Paul;
Hayashi, Satomi;
Luo, Mingcheng;
Batley, Jacqueline;
Edwards, David;
Doležel, Jaroslav;
Šimková, Hana

Publication type:

Article

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15848-y

By:

Low, Wai Yee;
Tearle, Rick;
Liu, Ruijie;
Koren, Sergey;
Rhie, Arang;
Bickhart, Derek M.;
Rosen, Benjamin D.;
Kronenberg, Zev N.;
Kingan, Sarah B.;
Tseng, Elizabeth;
Thibaud-Nissen, Françoise;
Martin, Fergal J.;
Billis, Konstantinos;
Ghurye, Jay;
Hastie, Alex R.;
Lee, Joyce;
Pang, Andy W. C.;
Heaton, Michael P.;
Phillippy, Adam M.;
Hiendleder, Stefan

Publication type:

Article

Rapid Genome Mapping in Nanochannel Arrays for Highly Complete and Accurate <i>De Novo</i> Sequence Assembly of the Complex <i>Aegilops tauschii</i> Genome.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055864

By:

Hastie, Alex R.;
Dong, Lingli;
Smith, Alexis;
Finklestein, Jeff;
Lam, Ernest T.;
Huo, Naxin;
Cao, Han;
Kwok, Pui-Yan;
Deal, Karin R.;
Dvorak, Jan;
Luo, Ming-Cheng;
Gu, Yong;
Xiao, Ming

Publication type:

Article

Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays.

Published in:

Genetics, 2016, v. 202, n. 1, p. 351, doi. 10.1534/genetics.115.183483

By:

Mak, Angel C. Y.;
Lai, Yvonne Y. Y.;
Lam, Ernest T.;
Tsz-Piu Kwok;
Leung, Alden K. Y.;
Poon, Annie;
Mostovoy, Yulia;
Hastie, Alex R.;
Stedman, William;
Anantharaman, Thomas;
Andrews, Warren;
Xiang Zhou;
Pang, Andy W. C.;
Heng Dai;
Chu, Catherine;
Chin Lin;
Wu, Jacob J. K.;
L. Li, Catherine M.;
Jing-Woei Li;
Yim, Aldrin K. Y.

Publication type:

Article

Comparative Benchmarking of Optical Genome Mapping and Chromosomal Microarray Reveals High Technological Concordance in CNV Identification and Additional Structural Variant Refinement.

Published in:

Genes, 2023, v. 14, n. 10, p. 1868, doi. 10.3390/genes14101868

By:

Barseghyan, Hayk;
Pang, Andy Wing Chun;
Clifford, Benjamin;
Serrano, Moises A.;
Chaubey, Alka;
Hastie, Alex R.

Publication type:

Article

Optical Genome Mapping: Integrating Structural Variations for Precise Homologous Recombination Deficiency Score Calculation.

Published in:

Genes, 2023, v. 14, n. 9, p. 1683, doi. 10.3390/genes14091683

By:

Sahajpal, Nikhil Shri;
Mondal, Ashis K.;
Vashisht, Ashutosh;
Singh, Harmanpreet;
Pang, Andy Wing Chun;
Saul, Daniel;
Nivin, Omar;
Hilton, Benjamin;
DuPont, Barbara R.;
Kota, Vamsi;
Savage, Natasha M.;
Hastie, Alex R.;
Chaubey, Alka;
Kolhe, Ravindra

Publication type:

Article

Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-018-08148-z

By:

Chaisson, Mark J. P.;
Sanders, Ashley D.;
Zhao, Xuefang;
Malhotra, Ankit;
Porubsky, David;
Rausch, Tobias;
Gardner, Eugene J.;
Rodriguez, Oscar L.;
Guo, Li;
Collins, Ryan L.;
Fan, Xian;
Wen, Jia;
Handsaker, Robert E.;
Fairley, Susan;
Kronenberg, Zev N.;
Kong, Xiangmeng;
Hormozdiari, Fereydoun;
Lee, Dillon;
Wenger, Aaron M.;
Hastie, Alex R.

Publication type:

Article

Genome maps across 26 human populations reveal population-specific patterns of structural variation.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08992-7

By:

Levy-Sakin, Michal;
Pastor, Steven;
Mostovoy, Yulia;
Li, Le;
Leung, Alden K. Y.;
McCaffrey, Jennifer;
Young, Eleanor;
Lam, Ernest T.;
Hastie, Alex R.;
Wong, Karen H. Y.;
Chung, Claire Y. L.;
Ma, Walfred;
Sibert, Justin;
Rajagopalan, Ramakrishnan;
Jin, Nana;
Chow, Eugene Y. C.;
Chu, Catherine;
Poon, Annie;
Lin, Chin;
Naguib, Ahmed

Publication type:

Article