Works by Hart, Steven N.

Results: 41
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    Mapping molecular subtype specific alterations in breast cancer brain metastases identifies clinically relevant vulnerabilities.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-27987-5
    By:
    • Cosgrove, Nicola;
    • Varešlija, Damir;
    • Keelan, Stephen;
    • Elangovan, Ashuvinee;
    • Atkinson, Jennifer M.;
    • Cocchiglia, Sinéad;
    • Bane, Fiona T.;
    • Singh, Vikrant;
    • Furney, Simon;
    • Hu, Chunling;
    • Carter, Jodi M.;
    • Hart, Steven N.;
    • Yadav, Siddhartha;
    • Goetz, Matthew P.;
    • Hill, Arnold D. K.;
    • Oesterreich, Steffi;
    • Lee, Adrian V.;
    • Couch, Fergus J.;
    • Young, Leonie S.
    Publication type:
    Article
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    Democratizing Artificial Intelligence in Anatomic Pathology.

    Published in:
    Archives of Pathology & Laboratory Medicine, 2025, v. 149, n. 1, p. 55, doi. 10.5858/arpa.2023-0205-oa
    By:
    • Flotte, Thomas J.;
    • Derauf, Stephanie A.;
    • Byrd, Rachel K.;
    • Kroneman, Trynda N.;
    • Bell, Debra A.;
    • Stetzik, Lucas;
    • Lee, Seung-Yi;
    • Samiei, Alireza;
    • Hart, Steven N.;
    • Garcia, Joaquin J.;
    • Beamer, Gillian;
    • Westerling-Bui, Thomas
    Publication type:
    Article
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    Recommendations for performance optimizations when using GATK3.8 and GATK4.

    Published in:
    BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3169-7
    By:
    • Heldenbrand, Jacob R;
    • Baheti, Saurabh;
    • Bockol, Matthew A;
    • Drucker, Travis M;
    • Hart, Steven N;
    • Hudson, Matthew E;
    • Iyer, Ravishankar K;
    • Kalmbach, Michael T;
    • Kendig, Katherine I;
    • Klee, Eric W;
    • Mattson, Nathan R;
    • Wieben, Eric D;
    • Wiepert, Mathieu;
    • Wildman, Derek E;
    • Mainzer, Liudmila S
    Publication type:
    Article
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    Collaborative science in the next-generation sequencing era: a viewpoint on how to combine exome sequencing data across sites to identify novel disease susceptibility genes.

    Published in:
    Briefings in Bioinformatics, 2016, v. 17, n. 4, p. 672, doi. 10.1093/bib/bbv075
    By:
    • Hart, Steven N.;
    • Maxwell, Kara N.;
    • Thomas, Tinu;
    • Ravichandran, Vignesh;
    • Wubberhorst, Bradley;
    • Klein, Robert J.;
    • Schrader, Kasmintan;
    • Szabo, Csilla;
    • Weitzel, Jeffrey N.;
    • Neuhausen, Susan L.;
    • Nathanson, Katherine;
    • Offit, Kenneth;
    • Couch, Fergus J.;
    • Vijai, Joseph
    Publication type:
    Article
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    PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.

    Published in:
    Bioinformatics, 2014, v. 30, n. 18, p. 2678, doi. 10.1093/bioinformatics/btu363
    By:
    • Wang, Chen;
    • Evans, Jared M.;
    • Bhagwate, Aditya V.;
    • Prodduturi, Naresh;
    • Sarangi, Vivekananda;
    • Middha, Mridu;
    • Sicotte, Hugues;
    • Vedell, Peter T.;
    • Hart, Steven N.;
    • Oliver, Gavin R.;
    • Kocher, Jean-Pierre A.;
    • Maurer, Matthew J.;
    • Novak, Anne J.;
    • Slager, Susan L.;
    • Cerhan, James R.;
    • Asmann, Yan W.
    Publication type:
    Article
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    TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. 14, p. 6945, doi. 10.1093/nar/gkv111
    By:
    • Chien, Jeremy;
    • Sicotte, Hugues;
    • Jian-Bing Fan;
    • Humphray, Sean;
    • Cunningham, Julie M.;
    • Kalli, Kimberly R.;
    • Oberg, Ann L.;
    • Hart, Steven N.;
    • Ying Li;
    • Davila, Jaime I.;
    • Baheti, Saurabh;
    • Chen Wang;
    • Dietmann, Sabine;
    • Atkinson, Elizabeth J.;
    • Asmann, Yan W.;
    • Bell, Debra A.;
    • Takayo Ota;
    • Tarabishy, Yaman;
    • Rui Kuang;
    • Bibikova, Marina
    Publication type:
    Article
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    Susceptibility gene mutations in germline and tumors of patients with HER2-negative advanced breast cancer.

    Published in:
    NPJ Breast Cancer, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41523-024-00667-x
    By:
    • Fasching, Peter A.;
    • Hu, Chunling;
    • Hart, Steven N.;
    • Ruebner, Matthias;
    • Polley, Eric C.;
    • Gnanaolivu, Rohan D.;
    • Hartkopf, Andreas D.;
    • Huebner, Hanna;
    • Janni, Wolfgang;
    • Hadji, Peyman;
    • Tesch, Hans;
    • Uhrig, Sabrina;
    • Ettl, Johannes;
    • Lux, Michael P.;
    • Lüftner, Diana;
    • Wallwiener, Markus;
    • Wurmthaler, Lena A.;
    • Goossens, Chloë;
    • Müller, Volkmar;
    • Beckmann, Matthias W.
    Publication type:
    Article
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    Mutational Landscapes of Sequential Prostate Metastases and Matched Patient Derived Xenografts during Enzalutamide Therapy.

    Published in:
    PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0145176
    By:
    • Kohli, Manish;
    • Wang, Liguo;
    • Xie, Fang;
    • Sicotte, Hugues;
    • Yin, Ping;
    • Dehm, Scott M.;
    • Hart, Steven N.;
    • Vedell, Peter T.;
    • Barman, Poulami;
    • Qin, Rui;
    • Mahoney, Douglas W.;
    • Carlson, Rachel E.;
    • Eckel-Passow, Jeanette E.;
    • Atwell, Thomas D.;
    • Eiken, Patrick W.;
    • McMenomy, Brendan P.;
    • Wieben, Eric D.;
    • Jha, Gautam;
    • Jimenez, Rafael E.;
    • Weinshilboum, Richard
    Publication type:
    Article
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    The contribution of pathogenic variants in breast cancer susceptibility genes to familial breast cancer risk.

    Published in:
    NPJ Breast Cancer, 2017, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41523-017-0024-8
    By:
    • Slavin, Thomas P.;
    • Maxwell, Kara N.;
    • Lilyquist, Jenna;
    • Vijai, Joseph;
    • Neuhausen, Susan L.;
    • Hart, Steven N.;
    • Ravichandran, Vignesh;
    • Thomas, Tinu;
    • Maria, Ann;
    • Villano, Danylo;
    • Schrader, Kasmintan A.;
    • Moore, Raymond;
    • Hu, Chunling;
    • Wubbenhorst, Bradley;
    • Wenz, Brandon M.;
    • D'Andrea, Kurt;
    • Robson, Mark E.;
    • Peterlongo, Paolo;
    • Bonanni, Bernardo;
    • Ford, James M.
    Publication type:
    Article
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    Design considerations for workflow management systems use in production genomics research and the clinic.

    Published in:
    Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-99288-8
    By:
    • Ahmed, Azza E.;
    • Allen, Joshua M.;
    • Bhat, Tajesvi;
    • Burra, Prakruthi;
    • Fliege, Christina E.;
    • Hart, Steven N.;
    • Heldenbrand, Jacob R.;
    • Hudson, Matthew E.;
    • Istanto, Dave Deandre;
    • Kalmbach, Michael T.;
    • Kapraun, Gregory D.;
    • Kendig, Katherine I.;
    • Kendzior, Matthew Charles;
    • Klee, Eric W.;
    • Mattson, Nate;
    • Ross, Christian A.;
    • Sharif, Sami M.;
    • Venkatakrishnan, Ramshankar;
    • Fadlelmola, Faisal M.;
    • Mainzer, Liudmila S.
    Publication type:
    Article
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    Whole‐exome sequencing of non‐BRCA1/BRCA2 mutation carrier cases at high‐risk for hereditary breast/ovarian cancer.

    Published in:
    Human Mutation, 2021, v. 42, n. 3, p. 290, doi. 10.1002/humu.24158
    By:
    • Felicio, Paula S.;
    • Grasel, Rebeca S.;
    • Campacci, Natalia;
    • Paula, Andre E.;
    • Galvão, Henrique C. R.;
    • Torrezan, Giovana T.;
    • Sabato, Cristina S.;
    • Fernandes, Gabriela C.;
    • Souza, Cristiano P.;
    • Michelli, Rodrigo D.;
    • Andrade, Carlos E.;
    • Barros, Bruna Durães De Figueiredo;
    • Matsushita, Marcus M.;
    • Revil, Timothée;
    • Ragoussis, Jiannis;
    • Couch, Fergus J.;
    • Hart, Steven N.;
    • Reis, Rui M.;
    • Melendez, Matias E.;
    • Tonin, Patricia N.
    Publication type:
    Article
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    Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy.

    Published in:
    Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00736
    By:
    • Kendig, Katherine I.;
    • Baheti, Saurabh;
    • Bockol, Matthew A.;
    • Drucker, Travis M.;
    • Hart, Steven N.;
    • Heldenbrand, Jacob R.;
    • Hernaez, Mikel;
    • Hudson, Matthew E.;
    • Kalmbach, Michael T.;
    • Klee, Eric W.;
    • Mattson, Nathan R.;
    • Ross, Christian A.;
    • Taschuk, Morgan;
    • Wieben, Eric D.;
    • Wiepert, Mathieu;
    • Wildman, Derek E.;
    • Mainzer, Liudmila S.
    Publication type:
    Article
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