Works matching AU Harris, Simon R.

Results: 97
    1

    Playing fast and loose with mutation.

    Published in:
    Nature Reviews Microbiology, 2013, v. 11, n. 12, p. 822, doi. 10.1038/nrmicro3164
    By:
    • Mather, Alison E.;
    • Harris, Simon R.
    Publication type:
    Article
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    Rapid Bacterial Whole-Genome Sequencing to Enhance Diagnostic and Public Health Microbiology.

    Published in:
    JAMA Internal Medicine, 2013, v. 173, n. 15, p. 1397, doi. 10.1001/jamainternmed.2013.7734
    By:
    • Reuter, Sandra;
    • Ellington, Matthew J.;
    • Cartwright, Edward J. P.;
    • Köser, Claudio U.;
    • Török, M. Estée;
    • Gouliouris, Theodore;
    • Harris, Simon R.;
    • Brown, Nicholas M.;
    • Holden, Matthew T. G.;
    • Quail, Mike;
    • Parkhill, Julian;
    • Smith, Geoffrey P.;
    • Bentley, Stephen D.;
    • Peacock, Sharon J.
    Publication type:
    Article
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    Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana.

    Published in:
    PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0209395
    By:
    • Otchere, Isaac Darko;
    • van Tonder, Andries J.;
    • Asante-Poku, Adwoa;
    • Sánchez-Busó, Leonor;
    • Coscollá, Mireia;
    • Osei-Wusu, Stephen;
    • Asare, Prince;
    • Aboagye, Samuel Yaw;
    • Ekuban, Samuel Acquah;
    • Yahayah, Abdallah Iddrisu;
    • Forson, Audrey;
    • Baddoo, Akosua;
    • Laryea, Clement;
    • Parkhill, Julian;
    • Harris, Simon R.;
    • Gagneux, Sebastien;
    • Yeboah-Manu, Dorothy
    Publication type:
    Article
    6

    Evolution and transmission of drug-resistant tuberculosis in a Russian population.

    Published in:
    Nature Genetics, 2014, v. 46, n. 3, p. 279, doi. 10.1038/ng.2878
    By:
    • Casali, Nicola;
    • Nikolayevskyy, Vladyslav;
    • Balabanova, Yanina;
    • Harris, Simon R;
    • Ignatyeva, Olga;
    • Kontsevaya, Irina;
    • Corander, Jukka;
    • Bryant, Josephine;
    • Parkhill, Julian;
    • Nejentsev, Sergey;
    • Horstmann, Rolf D;
    • Brown, Timothy;
    • Drobniewski, Francis
    Publication type:
    Article
    7

    Dense genomic sampling identifies highways of pneumococcal recombination.

    Published in:
    Nature Genetics, 2014, v. 46, n. 3, p. 305, doi. 10.1038/ng.2895
    By:
    • Chewapreecha, Claire;
    • Harris, Simon R;
    • Croucher, Nicholas J;
    • Turner, Claudia;
    • Marttinen, Pekka;
    • Cheng, Lu;
    • Pessia, Alberto;
    • Aanensen, David M;
    • Mather, Alison E;
    • Page, Andrew J;
    • Salter, Susannah J;
    • Harris, David;
    • Nosten, Francois;
    • Goldblatt, David;
    • Corander, Jukka;
    • Parkhill, Julian;
    • Turner, Paul;
    • Bentley, Stephen D
    Publication type:
    Article
    8

    Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

    Published in:
    Nature Genetics, 2013, v. 45, n. 10, p. 1176, doi. 10.1038/ng.2744
    By:
    • Comas, Iñaki;
    • Coscolla, Mireia;
    • Luo, Tao;
    • Borrell, Sonia;
    • Holt, Kathryn E;
    • Kato-Maeda, Midori;
    • Parkhill, Julian;
    • Malla, Bijaya;
    • Berg, Stefan;
    • Thwaites, Guy;
    • Yeboah-Manu, Dorothy;
    • Bothamley, Graham;
    • Mei, Jian;
    • Wei, Lanhai;
    • Bentley, Stephen;
    • Harris, Simon R;
    • Niemann, Stefan;
    • Diel, Roland;
    • Aseffa, Abraham;
    • Gao, Qian
    Publication type:
    Article
    9

    Emergence and global spread of epidemic healthcare-associated Clostridium difficile.

    Published in:
    Nature Genetics, 2013, v. 45, n. 1, p. 109, doi. 10.1038/ng.2478
    By:
    • He, Miao;
    • Miyajima, Fabio;
    • Roberts, Paul;
    • Ellison, Louise;
    • Pickard, Derek J;
    • Martin, Melissa J;
    • Connor, Thomas R;
    • Harris, Simon R;
    • Fairley, Derek;
    • Bamford, Kathleen B;
    • D'Arc, Stephanie;
    • Brazier, Jon;
    • Brown, Derek;
    • Coia, John E;
    • Douce, Gill;
    • Gerding, Dale;
    • Kim, Hee Jung;
    • Koh, Tse Hsien;
    • Kato, Haru;
    • Senoh, Mitsutoshi
    Publication type:
    Article
    10

    Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa.

    Published in:
    Nature Genetics, 2012, v. 44, n. 11, p. 1215, doi. 10.1038/ng.2423
    By:
    • Okoro, Chinyere K;
    • Kingsley, Robert A;
    • Connor, Thomas R;
    • Harris, Simon R;
    • Parry, Christopher M;
    • Al-Mashhadani, Manar N;
    • Kariuki, Samuel;
    • Msefula, Chisomo L;
    • Gordon, Melita A;
    • de Pinna, Elizabeth;
    • Wain, John;
    • Heyderman, Robert S;
    • Obaro, Stephen;
    • Alonso, Pedro L;
    • Mandomando, Inacio;
    • MacLennan, Calman A;
    • Tapia, Milagritos D;
    • Levine, Myron M;
    • Tennant, Sharon M;
    • Parkhill, Julian
    Publication type:
    Article
    11

    Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.

    Published in:
    Nature Genetics, 2012, v. 44, n. 4, p. 413, doi. 10.1038/ng.2214
    By:
    • Harris, Simon R;
    • Clarke, Ian N;
    • Seth-Smith, Helena M B;
    • Solomon, Anthony W;
    • Cutcliffe, Lesley T;
    • Marsh, Peter;
    • Skilton, Rachel J;
    • Holland, Martin J;
    • Mabey, David;
    • Peeling, Rosanna W;
    • Lewis, David A;
    • Spratt, Brian G;
    • Unemo, Magnus;
    • Persson, Kenneth;
    • Bjartling, Carina;
    • Brunham, Robert;
    • de Vries, Henry J C;
    • Morré, Servaas A;
    • Speksnijder, Arjen;
    • Bébéar, Cécile M
    Publication type:
    Article
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    Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain.

    Published in:
    BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-239
    By:
    • Seth-Smith, Helena M. B.;
    • Harris, Simon R.;
    • Persson, Kenneth;
    • Marsh, Pete;
    • Barron, Andrew;
    • Bignell, Alexandra;
    • Bjartling, Carina;
    • Clark, Louise;
    • Cutcliffe, Lesley T.;
    • Lambden, Paul R.;
    • Lennard, Nicola;
    • Lockey, Sarah J.;
    • Quail, Michael A.;
    • Salim, Omar;
    • Skilton, Rachel J.;
    • Yibing Wang;
    • Holland, Martin J.;
    • Parkhill, Julian;
    • Thomson, Nicholas R.;
    • Clarke, Ian N.
    Publication type:
    Article
    14

    The Genome of the Obligate Intracellular Parasite Trachipleistophora hominis: New Insights into Microsporidian Genome Dynamics and Reductive Evolution.

    Published in:
    PLoS Pathogens, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.ppat.1002979
    By:
    • Heinz, Eva;
    • Williams, Tom A.;
    • Nakjang, Sirintra;
    • Noël, Christophe J.;
    • Swan, Daniel C.;
    • Goldberg, Alina V.;
    • Harris, Simon R.;
    • Weinmaier, Thomas;
    • Markert, Stephanie;
    • Becher, Dörte;
    • Bernhardt, Jörg;
    • Dagan, Tal;
    • Hacker, Christian;
    • Lucocq, John M.;
    • Schweder, Thomas;
    • Rattei, Thomas;
    • Hall, Neil;
    • Hirt, Robert P.;
    • Embley, T. Martin
    Publication type:
    Article
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    Zero tolerance for healthcare-associated MRSA bacteraemia: is it realistic?

    Published in:
    Journal of Antimicrobial Chemotherapy (JAC), 2014, v. 69, n. 8, p. 2238
    By:
    • Török, M. Estée;
    • Harris, Simon R.;
    • Cartwright, Edward J. P.;
    • Raven, Kathy E.;
    • Brown, Nicholas M.;
    • Allison, Michael E. D.;
    • Greaves, Daniel;
    • Quail, Michael A.;
    • Limmathurotsakul, Direk;
    • Holden, Matthew T. G.;
    • Parkhill, Julian;
    • Peacock, Sharon J.
    Publication type:
    Article
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    Countering concerted homoplasy

    Published in:
    Cladistics, 2003, v. 19, n. 2, p. 128, doi. 10.1111/j.1096-0031.2003.tb00300.x
    By:
    • Harris, Simon R.;
    • Wilkinson, Mark;
    • Marques, Antonio C.
    Publication type:
    Article
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    A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.

    Published in:
    Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00858-2
    By:
    • Sánchez-Busó, Leonor;
    • Yeats, Corin A.;
    • Taylor, Benjamin;
    • Goater, Richard J.;
    • Underwood, Anthony;
    • Abudahab, Khalil;
    • Argimón, Silvia;
    • Ma, Kevin C.;
    • Mortimer, Tatum D.;
    • Golparian, Daniel;
    • Cole, Michelle J.;
    • Grad, Yonatan H.;
    • Martin, Irene;
    • Raphael, Brian H.;
    • Shafer, William M.;
    • Town, Katy;
    • Wi, Teodora;
    • Harris, Simon R.;
    • Unemo, Magnus;
    • Aanensen, David M.
    Publication type:
    Article
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    Genomic Investigations Unmask Mycoplasma amphoriforme, a New Respiratory Pathogen.

    Published in:
    Clinical Infectious Diseases, 2015, v. 60, n. 3, p. 381, doi. 10.1093/cid/ciu820
    By:
    • Gillespie, Stephen H.;
    • Clare L. Ling;
    • Oravcova, Katarina;
    • Pinheiro, Miguel;
    • Wells, Louise;
    • Bryant, Josephine M.;
    • McHugh, Timothy D.;
    • Bébéar, Cecile;
    • Webster, David;
    • Harris, Simon R.;
    • Seth-Smith, Helena M. B.;
    • Thomson, Nicholas R.
    Publication type:
    Article
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    Genomic variations leading to alterations in cell morphology of Campylobacter spp.

    Published in:
    Scientific Reports, 2016, p. 38303, doi. 10.1038/srep38303
    By:
    • Esson, Diane;
    • Mather, Alison E.;
    • Scanlan, Eoin;
    • Gupta, Srishti;
    • de Vries, Stefan P. W.;
    • Bailey, David;
    • Harris, Simon R.;
    • McKinley, Trevelyan J.;
    • Méric, Guillaume;
    • Berry, Sophia K.;
    • Mastroeni, Pietro;
    • Sheppard, Samuel K.;
    • Christie, Graham;
    • Thomson, Nicholas R.;
    • Parkhill, Julian;
    • Maskell, Duncan J.;
    • Grant, Andrew J.
    Publication type:
    Article
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    A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae.

    Published in:
    EMBO Molecular Medicine, 2015, v. 7, n. 3, p. 227, doi. 10.15252/emmm.201404767
    By:
    • Chung The, Hao;
    • Karkey, Abhilasha;
    • Pham Thanh, Duy;
    • Boinett, Christine J;
    • Cain, Amy K;
    • Ellington, Matthew;
    • Baker, Kate S;
    • Dongol, Sabina;
    • Thompson, Corinne;
    • Harris, Simon R;
    • Jombart, Thibaut;
    • Le Thi Phuong, Tu;
    • Tran Do Hoang, Nhu;
    • Ha Thanh, Tuyen;
    • Shretha, Shrijana;
    • Joshi, Suchita;
    • Basnyat, Buddha;
    • Thwaites, Guy;
    • Thomson, Nicholas R;
    • Rabaa, Maia A
    Publication type:
    Article
    47

    Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel mecA homologue mecC.

    Published in:
    EMBO Molecular Medicine, 2013, v. 5, n. 4, p. 509, doi. 10.1002/emmm.201202413
    By:
    • Harrison, Ewan M.;
    • Paterson, Gavin K.;
    • Holden, Matthew T.G.;
    • Larsen, Jesper;
    • Stegger, Marc;
    • Larsen, Anders Rhod;
    • Petersen, Andreas;
    • Skov, Robert L.;
    • Christensen, Judit Marta;
    • Bak Zeuthen, Anne;
    • Heltberg, Ole;
    • Harris, Simon R.;
    • Zadoks, Ruth N.;
    • Parkhill, Julian;
    • Peacock, Sharon J.;
    • Holmes, Mark A.
    Publication type:
    Article
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    Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone.

    Published in:
    BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1741-7007-12-49
    By:
    • Croucher, Nicholas J.;
    • Hanage, William P.;
    • Harris, Simon R.;
    • McGee, Lesley;
    • van der Linden, Mark;
    • de Lencastre, Herminia;
    • Sá-Leão, Raquel;
    • Jae-Hoon Song;
    • Kwan Soo Ko;
    • Beall, Bernard;
    • Klugman, Keith P.;
    • Parkhill, Julian;
    • Tomasz, Alexander;
    • Kristinsson, Karl G.;
    • Bentley, Stephen D.
    Publication type:
    Article
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