Works by Harris, Midori

Results: 27

Model organism databases: essential resources that need the support of both funders and users.

Published in:

BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0276-z

By:

Oliver, Stephen G.;
Lock, Antonia;
Harris, Midori A.;
Nurse, Paul;
Wood, Valerie

Publication type:

Article

PomBase: a comprehensive online resource for fission yeast.

Published in:

Nucleic Acids Research, 2012, p. D695, doi. 10.1093/nar/gkr853

By:

Wood, Valerie;
Harris, Midori A.;
McDowall, Mark D.;
Rutherford, Kim;
Vaughan, Brendan W.;
Staines, Daniel M.;
Aslett, Martin;
Lock, Antonia;
Bähler, Jürg;
Kersey, Paul J.;
Oliver, Stephen G.

Publication type:

Article

The European Bioinformatics Institute's data resources.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 43, doi. 10.1093/nar/gkg066

By:

Brooksbank, Catherine;
Camon, Evelyn;
Harris, Midori A.;
Magrane, Michele;
Martin, Maria Jesus;
Mulder, Nicola;
O'Donovan, Claire;
Parkinson, Helen;
Tuli, Mary Ann;
Apweiler, Rolf;
Birney, Ewan;
Brazma, Alvis;
Henrick, Kim;
Lopez, Rodrigo;
Stoesser, Guenter;
Stoehr, Peter;
Cameron, Graham

Publication type:

Article

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).

Published in:

Nucleic Acids Research, 2002, v. 30, n. 1, p. 69, doi. 10.1093/nar/30.1.69

By:

Dwight, Selina S.;
Harris, Midori A.;
Dolinski, Kara;
Ball, Catherine A.;
Binkley, Gail;
Christie, Karen R.;
Fisk, Dianna G.;
Issel-Tarver, Laurie;
Schroeder, Mark;
Sherlock, Gavin;
Sethuraman, Anand;
Weng, Shuai;
Botstein, David;
Cherry, J. Michael

Publication type:

Article

Expanding yeast knowledge online.

Published in:

Yeast, 1998, v. 14, n. 16, p. 1453, doi. 10.1002/(SICI)1097-0061(199812)14:16<1453::AID-YEA348>3.0.CO;2-G

By:

Dolinski, Kara;
Ball, Catherine A.;
Chervitz, Stephen A.;
Dwight, Selina S.;
Harris, Midori A.;
Roberts, Shannon;
Roe, Taiyun;
Cherry, J. Michael;
Botstein, David

Publication type:

Article

Gene Ontology: tool for the unification of biology.

Published in:

Nature Genetics, 2000, v. 25, n. 1, p. 25, doi. 10.1038/75556

By:

Ashburner, Michael;
Ball, Catherine A.;
Blake, Judith A.;
Botstein, David;
Butler, Heather;
Cherry, J. Michael;
Davis, Allan P.;
Dolinski, Kara;
Dwight, Selina S.;
Eppig, Janan T.;
Harris, Midori A.;
Hill, David P.;
Issel-Tarver, Laurie;
Kasarskis, Andrew;
Lewis, Suzanna;
Matese, John C.;
Richardson, Joel E.;
Ringwald, Martin;
Rubin, Gerald M.

Publication type:

Article

OBO-Edit an ontology editor for biologists.

Published in:

Bioinformatics, 2007, v. 23, n. 16, p. 2198

By:

John Day-Richter;
Midori A. Harris;
Melissa Haendel;
The Gene Ontology OBO-Edit Working Group;
Suzanna Lewis

Publication type:

Article

Canto: an online tool for community literature curation.

Published in:

2014

By:

Rutherford, Kim M.;
Harris, Midori A.;
Lock, Antonia;
Oliver, Stephen G.;
Wood, Valerie

Publication type:

Product Review

FYPO: the fission yeast phenotype ontology.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1671, doi. 10.1093/bioinformatics/btt266

By:

Harris, Midori A.;
Lock, Antonia;
Bähler, Jürg;
Oliver, Stephen G.;
Wood, Valerie

Publication type:

Article

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology.

Published in:

Bioinformatics, 2012, v. 28, n. 13, p. 1783, doi. 10.1093/bioinformatics/bts250

By:

Hoehndorf, Robert;
Harris, Midori A.;
Herre, Heinrich;
Rustici, Gabriella;
Gkoutos, Georgios V.

Publication type:

Article

The Protein Feature Ontology: a tool for the unification of protein feature annotations.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2767, doi. 10.1093/bioinformatics/btn528

By:

Gabrielle A. Reeves;
Karen Eilbeck;
Michele Magrane;
Claire ODonovan;
Luisa Montecchi-Palazzi;
Midori A. Harris;
Sandra Orchard;
Rafael C. Jimenez;
Andreas Prlic;
Tim J. P. Hubbard;
Henning Hermjakob;
Janet M. Thornton

Publication type:

Article

Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 1, p. 80, doi. 10.1093/nar/29.1.80

By:

Ball, Catherine A.;
Jin, Heng;
Sherlock, Gavin;
Weng, Shuai;
Matese, John C.;
Andrada, Rey;
Binkley, Gail;
Dolinski, Kara;
Dwight, Selina S.;
Harris, Midori A.;
Issel-Tarver, Laurie;
Schroeder, Mark;
Botstein, David;
Cherry, J. Michael

Publication type:

Article

Integrating functional genomic information into the Saccharomyces Genome Database.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 1, p. 77, doi. 10.1093/nar/28.1.77

By:

Ball, Catherine A.;
Dolinski, Kara;
Dwight, Selina S.;
Harris, Midori A.;
Issel-Tarver, Laurie;
Kasarskis, Andrew;
Scafe, Charles R.;
Sherlock, Gavin;
Binkley, Gail;
Jin, Heng;
Kaloper, Mira;
Orr, Sidney D.;
Schroeder, Mark;
Weng, Shuai;
Zhu, Yan;
Botstein, David;
Cherry, J. Michael

Publication type:

Article

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.

Published in:

Nucleic Acids Research, 1999, v. 27, n. 1, p. 74, doi. 10.1093/nar/27.1.74

By:

Chervitz, Stephen A.;
Hester, Erich T.;
Ball, Catherine A.;
Dolinski, Kara;
Dwight, Selina S.;
Harris, Midori A.;
Juvik, Gail;
Malekian, Alice;
Roberts, Shannon;
Roe, TaiYun;
Scafe, Charles;
Schroeder, Mark;
Sherlock, Gavin;
Zhu, Shuai Weng, Yan;
Cherry, J. Michael;
Botstein, David

Publication type:

Article

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-513

By:

Hill, David P.;
Adams, Nico;
Bada, Mike;
Batchelor, Colin;
Berardini, Tanya Z.;
Dietze, Heiko.;
Drabkin, Harold J.;
Ennis, Marcus;
Foulger, Rebecca E.;
Harris, Midori A.;
Hastings, Janna.;
Kale, Namrata S.;
de Matos, Paula;
Mungall, Christopher J.;
Owen, Gareth;
Roncaglia, Paola;
Steinbeck, Christoph;
Turner, Steve;
Lomax, Jane

Publication type:

Article

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-513

By:

Hill, David P.;
Adams, Nico;
Bada, Mike;
Batchelor, Colin;
Berardini, Tanya Z.;
Dietze, Heiko;
Drabkin, Harold J.;
Ennis, Marcus;
Foulger, Rebecca E.;
Harris, Midori A.;
Hastings, Janna;
Kale, Namrata S.;
de Matos, Paula;
Mungall, Christopher J.;
Owen, Gareth;
Roncaglia, Paola;
Steinbeck, Christoph;
Turner, Steve;
Lomax, Jane

Publication type:

Article

A method for increasing expressivity of Gene Ontology annotations using a compositional approach.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-155

By:

Huntley, Rachael P.;
Harris, Midori A.;
Alam-Faruque, Yasmin;
Blake, Judith A.;
Carbon, Seth;
Dietze, Heiko;
Dimmer, Emily C.;
Foulger, Rebecca E.;
Hil, David P.;
Khodiyar, Varsha K.;
Lock, Antonia;
Lomax, Jane;
Lovering, Ruth C.;
Mutowo-Meullenet, Prudence;
Sawford, Tony;
Auken, Kimberly Van;
Wood, Valerie;
Mungall, Christopher J.

Publication type:

Article

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D821, doi. 10.1093/nar/gky961

By:

Lock, Antonia;
Rutherford, Kim;
Harris, Midori A;
Hayles, Jacqueline;
Oliver, Stephen G;
Bähler, Jürg;
Wood, Valerie

Publication type:

Article

PomBase 2015: updates to the fission yeast database.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D656, doi. 10.1093/nar/gku1040

By:

McDowall, Mark D.;
Harris, Midori A.;
Lock, Antonia;
Rutherford, Kim;
Staines, Daniel M.;
Bähler, Jürg;
Kersey, Paul J.;
Oliver, Stephen G.;
Wood, Valerie

Publication type:

Article

Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa028

By:

Lock, Antonia;
Harris, Midori A;
Rutherford, Kim;
Hayles, Jacqueline;
Wood, Valerie

Publication type:

Article

Annotation of gene product function from high-throughput studies using the Gene Ontology.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz007

By:

Attrill, Helen;
Gaudet, Pascale;
Huntley, Rachael P;
Lovering, Ruth C;
Engel, Stacia R;
Poux, Sylvain;
Auken, Kimberly M Van;
Georghiou, George;
Chibucos, Marcus C;
Berardini, Tanya Z;
Wood, Valerie;
Drabkin, Harold;
Fey, Petra;
Garmiri, Penelope;
Harris, Midori A;
Sawford, Tony;
Reiser, Leonore;
Tauber, Rebecca;
Toro, Sabrina;
Consortium, The Gene Ontology

Publication type:

Article

A guide to best practices for Gene Ontology (GO) manual annotation.

Published in:

Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat054

By:

Balakrishnan, Rama;
Harris, Midori A.;
Huntley, Rachael;
Van Auken, Kimberly;
Cherry, J. Michael

Publication type:

Article

Representing Kidney Development Using the Gene Ontology.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099864

By:

Alam-Faruque, Yasmin;
Hill, David P.;
Dimmer, Emily C.;
Harris, Midori A.;
Foulger, Rebecca E.;
Tweedie, Susan;
Attrill, Helen;
Howe, Douglas G.;
Thomas, Stephen Randall;
Davidson, Duncan;
Woolf, Adrian S.;
Blake, Judith A.;
Mungall, Christopher J.;
O’Donovan, Claire;
Apweiler, Rolf;
Huntley, Rachael P.

Publication type:

Article

JaponicusDB: rapid deployment of a model organism database for an emerging model species.

Published in:

Genetics, 2022, v. 220, n. 4, p. 1, doi. 10.1093/genetics/iyab223

By:

Rutherford, Kim M.;
Harris, Midori A.;
Oliferenko, Snezhana;
Wood, Valerie

Publication type:

Article

Fission stories: using PomBase to understand Schizosaccharomyces pombe biology.

Published in:

Genetics, 2022, v. 220, n. 4, p. 1, doi. 10.1093/genetics/iyab222

By:

Harris, Midori A.;
Rutherford, Kim M.;
Hayles, Jacqueline;
Lock, Antonia;
Bähler, Jürg;
Oliver, Stephen G.;
Mata, Juan;
Wood, Valerie

Publication type:

Article

Muscle Research and Gene Ontology: New standards for improved data integration.

Published in:

BMC Medical Genomics, 2009, v. 2, p. 1, doi. 10.1186/1755-8794-2-6

By:

Feltrin, Erika;
Campanaro, Stefano;
Diehl, Alexander D.;
Ehler, Elisabeth;
Faulkner, Georgine;
Fordham, Jennifer;
Gardin, Chiara;
Harris, Midori;
Hill, David;
Knoell, Ralph;
Laveder, Paolo;
Mittempergher, Lorenza;
Nori, Alessandra;
Reggiani, Carlo;
Sorrentino, Vincenzo;
Volpe, Pompeo;
Zara, Ivano;
Valle, Giorgio;
Clark, Jennifer Deegan née

Publication type:

Article

Ontology engineering.

Published in:

2010

By:

Alterovitz, Gil;
Xiang, Michael;
Hill, David P.;
Lomax, Jane;
Liu, Jonathan;
Cherkassky, Michael;
Dreyfuss, Jonathan;
Mungall, Chris;
Harris, Midori A.;
Dolan, Mary E.;
Blake, Judith A.;
Ramoni, Marco F.

Publication type:

Letter