Works by Harmon, Luke J.

Results: 65

An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology.

Published in:

Annals of the New York Academy of Sciences, 2013, v. 1289, n. 1, p. 90, doi. 10.1111/nyas.12157

By:

Pennell, Matthew W.;
Harmon, Luke J.

Publication type:

Article

An Inordinate Fondness for Eukaryotic Diversity.

Published in:

PLoS Biology, 2012, v. 10, n. 8, p. 1, doi. 10.1371/journal.pbio.1001382

By:

Harmon, Luke J.

Publication type:

Article

Extinction Risk and Diversification Are Linked in a Plant Biodiversity Hotspot.

Published in:

PLoS Biology, 2011, v. 9, n. 5, p. 1, doi. 10.1371/journal.pbio.1000620

By:

Davies, T. Jonathan;
Smith, Gideon F.;
Bellstedt, Dirk U.;
Boatwright, James S.;
Bytebier, Benny;
Cowling, Richard M.;
Forest, Félix;
Harmon, Luke J.;
Muasya, A. Muthama;
Schrire, Brian D.;
Steenkamp, Yolande;
van der Bank, Michelle;
Savolainen, Vincent

Publication type:

Article

Best Practices for Data Sharing in Phylogenetic Research.

Published in:

PLoS Currents, 2014, p. 51, doi. 10.1371/currents.tol.bf01eff4a6b60ca4825c69293dc59645

By:

Cranston, Karen;
Harmon, Luke J.;
O'Leary, Maureen A.;
Lisle, Curtis

Publication type:

Article

Arbor: Comparative Analysis Workflows for the Tree of Life.

Published in:

PLoS Currents, 2013, p. 119, doi. 10.1371/currents.tol.099161de5eabdee073fd3d21a44518dc

By:

Harmon, Luke J.;
Baumes, Jeffrey;
Hughes, Charles;
Soberon, Jorge;
Specht, Chelsea D.;
Turner, Wesley;
Lisle, Curtis;
Thacker, Robert W.

Publication type:

Article

Evolutionary diversification in stickleback affects ecosystem functioning.

Published in:

2009

By:

Harmon, Luke J.;
Matthews, Blake;
Des Roches, Simone;
Chase, Jonathan M.;
Shurin, Jonathan B.;
Schluter, Dolph

Publication type:

Letter

GEIGER: investigating evolutionary radiations.

Published in:

Bioinformatics, 2008, v. 24, n. 1, p. 129, doi. 10.1093/bioinformatics/btm538

By:

Luke J. Harmon;
Jason T. Weir;
Chad D. Brock;
Richard E. Glor;
Wendell Challenger

Publication type:

Article

Fighting over food unites the birds of North America in a continental dominance hierarchy.

Published in:

Behavioral Ecology, 2017, v. 28, n. 6, p. 1454, doi. 10.1093/beheco/arx108

By:

Miller, Eliot T.;
Bonter, David N.;
Eldermire, Charles;
Freeman, Benjamin G.;
Greig, Emma I.;
Harmon, Luke J.;
Lisle, Curtis;
Hochachka, Wesley M.

Publication type:

Article

A Comprehensive Study of Cyanobacterial Morphological and Ecological Evolutionary Dynamics through Deep Geologic Time.

Published in:

PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0162539

By:

Uyeda, Josef C.;
Harmon, Luke J.;
Blank, Carrine E.

Publication type:

Article

Fire in the tree: The origin and distribution of fire–adapted traits within conifers and their influence on speciation rates across the conifer phylogeny.

Published in:

American Journal of Botany, 2025, v. 112, n. 1, p. 1, doi. 10.1002/ajb2.16454

By:

Turck, Daniel F.;
Schwery, Orlando;
Harmon, Luke J.;
Tank, David C.

Publication type:

Article

There’s more than one way to climb a tree: Limb length and microhabitat use in lizards with toe pads.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184641

By:

Hagey, Travis J.;
Harte, Scott;
Vickers, Mathew;
Harmon, Luke J.;
Schwarzkopf, Lin

Publication type:

Article

The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics.

Published in:

BMC Evolutionary Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2148-13-22

By:

Tyerman, Jabus G.;
Ponciano, José M.;
Joyce, Paul;
Forney, Larry J.;
Harmon, Luke J.

Publication type:

Article

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2216, doi. 10.1093/bioinformatics/btu181

By:

Pennell, Matthew W.;
Eastman, Jonathan M.;
Slater, Graham J.;
Brown, Joseph W.;
Uyeda, Josef C.;
FitzJohn, Richard G.;
Alfaro, Michael E.;
Harmon, Luke J.

Publication type:

Article

Hybridizing salamanders experience accelerated diversification.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63378-w

By:

Patton, Austin H.;
Margres, Mark J.;
Epstein, Brendan;
Eastman, Jon;
Harmon, Luke J.;
Storfer, Andrew

Publication type:

Article

Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications.

Published in:

New Phytologist, 2015, v. 207, n. 2, p. 454, doi. 10.1111/nph.13491

By:

Tank, David C.;
Eastman, Jonathan M.;
Pennell, Matthew W.;
Soltis, Pamela S.;
Soltis, Douglas E.;
Hinchliff, Cody E.;
Brown, Joseph W.;
Sessa, Emily B.;
Harmon, Luke J.

Publication type:

Article

From genes to ecosystems: an emerging synthesis of eco-evolutionary dynamics.

Published in:

New Phytologist, 2009, v. 184, n. 4, p. 746, doi. 10.1111/j.1469-8137.2009.03081.x

By:

Bailey, Joseph K.;
Hendry, Andrew P.;
Kinnison, Michael T.;
Post, David M.;
Palkovacs, Eric P.;
Pelletier, Fanie;
Harmon, Luke J.;
Schweitzer, Jennifer A.

Publication type:

Article

ratematrix: An R package for studying evolutionary integration among several traits on phylogenetic trees.

Published in:

Methods in Ecology & Evolution, 2017, v. 8, n. 12, p. 1920, doi. 10.1111/2041-210X.12826

By:

Caetano, Daniel S.;
Harmon, Luke J.;
Price, Samantha

Publication type:

Article

Congruification: support for time scaling large phylogenetic trees.

Published in:

Methods in Ecology & Evolution, 2013, v. 4, n. 7, p. 688, doi. 10.1111/2041-210X.12051

By:

Eastman, Jonathan M.;
Harmon, Luke J.;
Tank, David C.;
Paradis, Emmanuel

Publication type:

Article

Unifying fossils and phylogenies for comparative analyses of diversification and trait evolution.

Published in:

Methods in Ecology & Evolution, 2013, v. 4, n. 8, p. 699, doi. 10.1111/2041-210X.12091

By:

Slater, Graham J.;
Harmon, Luke J.;
Freckleton, Robert

Publication type:

Article

RBrownie: an R package for testing hypotheses about rates of evolutionary change.

Published in:

Methods in Ecology & Evolution, 2011, v. 2, n. 6, p. 660, doi. 10.1111/j.2041-210X.2011.00112.x

By:

Stack, J. Conrad;
Harmon, Luke J.;
O'Meara, Brian

Publication type:

Article

What free-ranging animals do at the zoo: a study of the behavior and habitat use of opossums ( Didelphis virginiana) on the grounds of the St. Louis Zoo.

Published in:

Zoo Biology, 2005, v. 24, n. 3, p. 197, doi. 10.1002/zoo.20046

By:

Harmon, Luke J.;
Bauman, Karen;
McCloud, Matt;
Parks, John;
Howell, Shannon;
Losos, Jonathan B.

Publication type:

Article

Delimiting the rare, endangered and actively speciating.

Published in:

Molecular Ecology Resources, 2024, v. 24, n. 3, p. 1, doi. 10.1111/1755-0998.13938

By:

Martinet, Kristen M.;
Harmon, Luke J.

Publication type:

Article

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-158

By:

Stoltzfus, Arlin;
Lapp, Hilmar;
Matasci, Naim;
Deus, Helena;
Sidlauskas, Brian;
Zmasek, Christian M.;
Vaidya, Gaurav;
Pontelli, Enrico;
Cranston, Karen;
Vos, Rutger;
Webb, Campbell O.;
Harmon, Luke J.;
Pirrung, Megan;
O'Meara, Brian;
Pennell, Matthew W.;
Mirarab, Siavash;
Rosenberg, Michael S;
Balhoff, James P.;
Bik, Holly M.;
Heath, Tracy A.

Publication type:

Article

Frequent origins of traumatic insemination involve convergent shifts in sperm and genital morphology.

Published in:

Evolution Letters, 2022, v. 6, n. 1, p. 63, doi. 10.1002/evl3.268

By:

Brand, Jeremias N.;
Harmon, Luke J.;
Schärer, Lukas

Publication type:

Article

The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6334

By:

Sarver, Brice A. J.;
Pennell, Matthew W.;
Brown, Joseph W.;
Keeble, Sara;
Hardwick, Kayla M.;
Sullivan, Jack;
Harmon, Luke J.

Publication type:

Article

Comparing Adaptive Radiations Across Space, Time, and Taxa.

Published in:

Journal of Heredity, 2020, v. 111, n. 1, p. 1, doi. 10.1093/jhered/esz064

By:

Gillespie, Rosemary G;
Bennett, Gordon M;
Meester, Luc De;
Feder, Jeffrey L;
Fleischer, Robert C;
Harmon, Luke J;
Hendry, Andrew P;
Knope, Matthew L;
Mallet, James;
Martin, Christopher;
Parent, Christine E;
Patton, Austin H;
Pfennig, Karin S;
Rubinoff, Daniel;
Schluter, Dolph;
Seehausen, Ole;
Shaw, Kerry L;
Stacy, Elizabeth;
Stervander, Martin;
Stroud, James T

Publication type:

Article

Beyond black and white: divergent behaviour and performance in three rapidly evolving lizard species at White Sands.

Published in:

Biological Journal of the Linnean Society, 2014, v. 111, n. 1, p. 169, doi. 10.1111/bij.12165

By:

Des Roches, Simone;
Torresdal, Jack;
Morgan, Travis W.;
Harmon, Luke J.;
Rosenblum, Erica B.

Publication type:

Article

Colonization of a novel depauperate habitat leads to trophic niche shifts in three desert lizard species.

Published in:

Oikos, 2016, v. 125, n. 3, p. 343, doi. 10.1111/oik.02493

By:

Des Roches, Simone;
Harmon, Luke J.;
Rosenblum, Erica B.

Publication type:

Article

Identifying models of trait‐mediated community assembly using random forests and approximate Bayesian computation.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 23, p. 13218, doi. 10.1002/ece3.5773

By:

Ruffley, Megan;
Peterson, Katie;
Week, Bob;
Tank, David C.;
Harmon, Luke J.

Publication type:

Article

When Field Experiments Yield Unexpected Results: Lessons Learned from Measuring Selection in White Sands Lizards.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0118560

By:

Hardwick, Kayla M.;
Harmon, Luke J.;
Hardwick, Scott D.;
Rosenblum, Erica Bree

Publication type:

Article

Ecological and Evolutionary Effects of Stickleback on Community Structure.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0059644

By:

Des Roches, Simone;
Shurin, Jonathan B.;
Schluter, Dolph;
Harmon, Luke J.

Publication type:

Article

Trees of Unusual Size: Biased Inference of Early Bursts from Large Molecular Phylogenies.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0043348

By:

Pennell, Matthew W.;
Sarver, Brice A. J.;
Harmon, Luke J.;
Ho, Simon

Publication type:

Article

Sympatric and Allopatric Divergence of MHC Genes in Threespine Stickleback.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0010948

By:

Matthews, Blake;
Harmon, Luke J.;
M'Gonigle, Leithen;
Marchinko, Kerry B.;
Schaschl, Helmut

Publication type:

Article

Modeling the Evolution of Rates of Continuous Trait Evolution.

Published in:

Systematic Biology, 2023, v. 72, n. 3, p. 590, doi. 10.1093/sysbio/syac068

By:

Martin, Bruce S;
Bradburd, Gideon S;
Harmon, Luke J;
Weber, Marjorie G

Publication type:

Article

Reconstructing Squamate Biogeography in Afro-Arabia Reveals the Influence of a Complex and Dynamic Geologic Past.

Published in:

Systematic Biology, 2022, v. 71, n. 2, p. 261, doi. 10.1093/sysbio/syab025

By:

Tejero-Cicuéndez, Héctor;
Patton, Austin H;
Caetano, Daniel S;
Šmíd, Jiří;
Harmon, Luke J;
Carranza, Salvador

Publication type:

Article

A General Model for Estimating Macroevolutionary Landscapes.

Published in:

Systematic Biology, 2018, v. 67, n. 2, p. 304, doi. 10.1093/sysbio/syx075

By:

BOUCHER, FLORIAN C.;
DÉMERY, VINCENT;
CONTI, ELENA;
HARMON, LUKE J.;
UYEDA, JOSEF

Publication type:

Article

A Novel Bayesian Method for Inferring and Interpreting the Dynamics of Adaptive Landscapes from Phylogenetic Comparative Data.

Published in:

Systematic Biology, 2014, v. 63, n. 6, p. 902, doi. 10.1093/sysbio/syu057

By:

Uyeda, Josef C.;
Harmon, Luke J.

Publication type:

Article

Testing for Temporal Variation in Diversification Rates When Sampling is Incomplete and Nonrandom.

Published in:

Systematic Biology, 2011, v. 60, n. 4, p. 410, doi. 10.1093/sysbio/syr007

By:

BROCK, CHAD D.;
HARMON, LUKE J.;
ALFARO, MICHAEL E.

Publication type:

Article

Phylogenetic Signal, Evolutionary Process, and Rate.

Published in:

Systematic Biology, 2008, v. 57, n. 4, p. 591, doi. 10.1080/10635150802302427

By:

Revell, Liam J.;
Harmon, Luke J.;
Collar, David C.

Publication type:

Article

The Role of Geography and Ecological Opportunity in the Diversification of Day Geckos (Phelsuma).

Published in:

Systematic Biology, 2008, v. 57, n. 4, p. 562, doi. 10.1080/10635150802304779

By:

Harmon, Luke J.;
Melville, Jane;
Larson, Allan;
Losos, Jonathan B.

Publication type:

Article

Resolving Deep Phylogenetic Relationships in Salamanders: Analyses of Mitochondrial and Nuclear Genomic Data.

Published in:

Systematic Biology, 2005, v. 54, n. 5, p. 758, doi. 10.1080/10635150500234641

By:

Weisrock, David W.;
Harmon, Luke J.;
Larson, Allan

Publication type:

Article

Ecological opportunity and sexual selection together predict adaptive radiation.

Published in:

Nature, 2012, v. 487, n. 7407, p. 366, doi. 10.1038/nature11144

By:

Wagner, Catherine E.;
Harmon, Luke J.;
Seehausen, Ole

Publication type:

Article

Competition and community structure in diurnal arboreal geckos (genus Phelsuma) in the Indian Ocean.

Published in:

Oikos, 2007, v. 116, n. 11, p. 1863, doi. 10.1111/j.0030-1299.2007.15958.x

By:

J. Harmon, Luke;
L. Harmon, Lisa;
G. Jones, Carl

Publication type:

Article

Detecting the macroevolutionary signal of species interactions.

Published in:

Journal of Evolutionary Biology, 2019, v. 32, n. 8, p. 769, doi. 10.1111/jeb.13477

By:

Harmon, Luke J.;
Andreazzi, Cecilia S.;
Débarre, Florence;
Drury, Jonathan;
Goldberg, Emma E.;
Martins, Ayana B.;
Melián, Carlos J.;
Narwani, Anita;
Nuismer, Scott L.;
Pennell, Matthew W.;
Rudman, Seth M.;
Seehausen, Ole;
Silvestro, Daniele;
Weber, Marjorie;
Matthews, Blake

Publication type:

Article

Estimation of the strength of mate preference from mated pairs observed in the wild.

Published in:

Evolution, 2022, v. 76, n. 1, p. 29, doi. 10.1111/evo.14397

By:

Clancey, Erin;
Johnson, Timothy R.;
Harmon, Luke J.;
Hohenlohe, Paul A.

Publication type:

Article

Tempo and mode of performance evolution across multiple independent origins of adhesive toe pads in lizards.

Published in:

Evolution, 2017, v. 71, n. 10, p. 2344, doi. 10.1111/evo.13318

By:

Hagey, Travis J.;
Uyeda, Josef C.;
Crandell, Kristen E.;
Cheney, Jorn A.;
Autumn, Kellar;
Harmon, Luke J.

Publication type:

Article

INTEGRATING FOSSILS WITH MOLECULAR PHYLOGENIES IMPROVES INFERENCE OF TRAIT EVOLUTION.

Published in:

Evolution, 2012, v. 66, n. 12, p. 3931, doi. 10.1111/j.1558-5646.2012.01723.x

By:

Slater, Graham J.;
Harmon, Luke J.;
Alfaro, Michael E.

Publication type:

Article

FITTING MODELS OF CONTINUOUS TRAIT EVOLUTION TO INCOMPLETELY SAMPLED COMPARATIVE DATA USING APPROXIMATE BAYESIAN COMPUTATION.

Published in:

Evolution, 2012, v. 66, n. 3, p. 752, doi. 10.1111/j.1558-5646.2011.01474.x

By:

Slater, Graham J.;
Harmon, Luke J.;
Wegmann, Daniel;
Joyce, Paul;
Revell, Liam J.;
Alfaro, Michael E.

Publication type:

Article

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES.

Published in:

Evolution, 2011, v. 65, n. 12, p. 3578, doi. 10.1111/j.1558-5646.2011.01401.x

By:

Eastman, Jonathan M.;
Alfaro, Michael E.;
Joyce, Paul;
Hipp, Andrew L.;
Harmon, Luke J.

Publication type:

Article

EVIDENCE OF CONSTRAINED PHENOTYPIC EVOLUTION IN A CRYPTIC SPECIES COMPLEX OF AGAMID LIZARDS.

Published in:

Evolution, 2011, v. 65, n. 4, p. 976, doi. 10.1111/j.1558-5646.2010.01211.x

By:

Smith, Katie L.;
Harmon, Luke J.;
Shoo, Luke P.;
Melville, Jane

Publication type:

Article