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An encyclopedia of mouse DNA elements (Mouse ENCODE).
- Published in:
- Genome Biology, 2012, v. 13, n. 8, p. 1, doi. 10.1186/gb-2012-13-8-418
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- Publication type:
- Article
An encyclopedia of mouse DNA elements (Mouse ENCODE).
- Published in:
- Genome Biology, 2012, v. 13, n. 8, p. 1, doi. 10.1186/gb-2012-13-8-418
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- Publication type:
- Article
Systematic Integration of Epigenomic Landscapes in Human and Mouse Blood Cells to Predict Activity and Targets of Regulatory Elements.
- Published in:
- FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.R5637
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- Publication type:
- Article
Dynamic shifts in transcription factor occupancy drive reprogramming of gene expression during hematopoietic differentiation (LB181).
- Published in:
- FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.lb181
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- Publication type:
- Article
Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1245-6
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- Publication type:
- Article
DCaP: detecting differential binding events in multiple conditions and proteins.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S9-S12
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- Publication type:
- Article
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.
- Published in:
- Nature, 2004, v. 432, n. 7018, p. 695, doi. 10.1038/nature03154
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- Publication type:
- Article
The effects of chromatin organization on variation in mutation rates in the genome.
- Published in:
- Nature Reviews Genetics, 2015, v. 16, n. 4, p. 213, doi. 10.1038/nrg3890
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- Publication type:
- Article
Genomic approaches towards finding cis-regulatory modules in animals.
- Published in:
- Nature Reviews Genetics, 2012, v. 13, n. 7, p. 469, doi. 10.1038/nrg3242
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- Publication type:
- Article
Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03082-6
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- Publication type:
- Article
OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1893-y
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- Publication type:
- Article
Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 9, p. 586, doi. 10.1093/gbe/evs032
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- Publication type:
- Article
Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 4, p. 586, doi. 10.1093/gbe/evs032
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- Publication type:
- Article
Sequences Within and Flanking Hypersensitive Sites 3 and 2 of the β-Globin Locus Control Region Required for Synergistic Versus Additive Interaction With the ε-globin Gene Promoter.
- Published in:
- Nucleic Acids Research, 1996, v. 24, n. 21, p. 4327, doi. 10.1093/nar/24.21.4327
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- Publication type:
- Article
Effects of sheared chromatin length on ChIP-seq quality and sensitivity.
- Published in:
- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 6, p. 1, doi. 10.1093/g3journal/jkab101
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- Publication type:
- Article
Variable evolutionary signatures at the heart of enhancers.
- Published in:
- Nature Genetics, 2010, v. 42, n. 9, p. 734, doi. 10.1038/ng0910-734
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- Publication type:
- Article
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.
- Published in:
- Bioinformatics, 2021, v. 37, n. 18, p. 3011, doi. 10.1093/bioinformatics/btab148
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- Publication type:
- Article
CTCF and transcription influence chromatin structure re-configuration after mitosis.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25418-5
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- Publication type:
- Article
Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells.
- Published in:
- IUBMB Life, 2020, v. 72, n. 1, p. 27, doi. 10.1002/iub.2195
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- Publication type:
- Article
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions.
- Published in:
- Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1519-9
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- Publication type:
- Article
Function of GATA Factors in the Adult Mouse Liver.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0083723
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- Publication type:
- Article
Comparative Genomics.
- Published in:
- PLoS Biology, 2003, v. 1, n. 11, p. 1, doi. 10.1371/journal.pbio.0000058
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- Publication type:
- Article
Comparative Genomics.
- Published in:
- PLoS Biology, 2003, v. 1, n. 2, p. 156, doi. 10.1371/journal.pbio.0000058
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- Publication type:
- Article
Topologically associating domains are stable units of replication-timing regulation.
- Published in:
- Nature, 2014, v. 515, n. 7527, p. 402, doi. 10.1038/nature13986
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- Publication type:
- Article
CLIMB: High-dimensional association detection in large scale genomic data.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34360-z
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- Publication type:
- Article
Discovering enhancers directly by activity.
- Published in:
- Nature Methods, 2014, v. 11, n. 5, p. 491, doi. 10.1038/nmeth.2933
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- Publication type:
- Article
Pluripotent stem cells reveal erythroid-specific activities of the GATA1 N-terminus.
- Published in:
- Journal of Clinical Investigation, 2015, v. 125, n. 3, p. 993, doi. 10.1172/JCI75714
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- Publication type:
- Article
Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 17, p. 9823, doi. 10.1093/nar/gkx659
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- Publication type:
- Article
Jointly characterizing epigenetic dynamics across multiple human cell types.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 14, p. 6721, doi. 10.1093/nar/gkw278
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- Publication type:
- Article
SBR-Blood: systems biology repository for hematopoietic cells.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D925, doi. 10.1093/nar/gkv1263
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- Publication type:
- Article
Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D1063, doi. 10.1093/nar/gkt911
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- Publication type:
- Article
Integrative annotation of chromatin elements from ENCODE data.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 2, p. 827, doi. 10.1093/nar/gks1284
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- Publication type:
- Article
Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05223-1
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- Publication type:
- Article
Sharing data between LSDBs and central repositories.
- Published in:
- Human Mutation, 2009, v. 30, n. 4, p. 493, doi. 10.1002/humu.20977
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- Publication type:
- Article
HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update.
- Published in:
- Human Mutation, 2007, v. 28, n. 2, p. 206, doi. 10.1002/humu.9479
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- Publication type:
- Article
HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server.
- Published in:
- Human Mutation, 2002, v. 19, n. 3, p. 225, doi. 10.1002/humu.10044
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- Publication type:
- Article
MRHMMs: Multivariate Regression Hidden Markov Models and the variantS.
- Published in:
- 2014
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- Publication type:
- Product Review
Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. 21, p. 7024, doi. 10.1093/nar/gkp747
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- Publication type:
- Article
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d466
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- Publication type:
- Article
Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d537
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- Publication type:
- Article
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3518, doi. 10.1093/nar/gkg579
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- Publication type:
- Article
Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions.
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 19, p. 3899, doi. 10.1093/nar/27.19.3899
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- Publication type:
- Article
Between form and function: the complexity of genome folding.
- Published in:
- Human Molecular Genetics, 2017, v. 26, p. R208, doi. 10.1093/hmg/ddx306
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- Publication type:
- Article
A guide to translation of research results from model organisms to human.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1026-9
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- Publication type:
- Article
Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the α globin cluster.
- Published in:
- Human Molecular Genetics, 2001, v. 10, n. 4, p. 371, doi. 10.1093/hmg/10.4.371
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- Publication type:
- Article
Establishment of regulatory elements during erythro-megakaryopoiesis identifies hematopoietic lineage-commitment points.
- Published in:
- Epigenetics & Chromatin, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13072-018-0195-z
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- Publication type:
- Article
Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility.
- Published in:
- Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0009-5
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- Publication type:
- Article