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Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus.
- Published in:
- Genome Biology, 2012, v. 13, n. 12, p. 1
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- Publication type:
- Article
Streptococcus pyogenes With Reduced Susceptibility to β-Lactams: How Big an Alarm Bell?
- Published in:
- 2020
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- Publication type:
- Editorial
Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data.
- Published in:
- Clinical Infectious Diseases, 2020, v. 70, n. 7, p. 1294, doi. 10.1093/cid/ciz404
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- Publication type:
- Article
Potential for Erosion of Efficacy in Noninferiority Trials of Decreasing Duration of Antibiotic Therapy.
- Published in:
- 2019
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- Publication type:
- Letter to the Editor
Relative Impact of Community and Hospital Antibiotic Use on the Selection of Extended-spectrum Beta-lactamase–producing Escherichia coli.
- Published in:
- Clinical Infectious Diseases, 2019, v. 69, n. 1, p. 182, doi. 10.1093/cid/ciy978
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- Publication type:
- Article
Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1573-6
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- Publication type:
- Article
Two decades of population genomics: will we ever agree on bacterial species?
- Published in:
- BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-023-01797-7
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- Publication type:
- Article
Fine-Scale Haplotype Structure Reveals Strong Signatures of Positive Selection in a Recombining Bacterial Pathogen.
- Published in:
- Molecular Biology & Evolution, 2020, v. 37, n. 2, p. 417, doi. 10.1093/molbev/msz225
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- Publication type:
- Article
Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.
- Published in:
- Molecular Biology & Evolution, 2017, v. 34, n. 5, p. 1167, doi. 10.1093/molbev/msx066
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- Publication type:
- Article
A Pluralistic Account of Homology: Adapting the Models to the Data.
- Published in:
- Molecular Biology & Evolution, 2014, v. 31, n. 3, p. 501, doi. 10.1093/molbev/mst228
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- Publication type:
- Article
Inference on Population Histories by Approximating Infinite Alleles Diffusion.
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- Molecular Biology & Evolution, 2013, v. 30, n. 2, p. 457, doi. 10.1093/molbev/mss227
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- Publication type:
- Article
Use of Genome Sequencing to Define Institutional Influenza Outbreaks, Toronto, Ontario, Canada, 2014-15.
- Published in:
- 2018
- By:
- Publication type:
- journal article
The Next Pandemic: On the Front Lines Against Humankind's Gravest Dangers.
- Published in:
- 2017
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- Publication type:
- Book Review
Penicillin Resistance of Nonvaccine Type Pneumococcus before and after PCV13 Introduction, United States.
- Published in:
- 2017
- By:
- Publication type:
- journal article
Diversification of bacterial genome content through distinct mechanisms over different timescales.
- Published in:
- Nature Communications, 2014, v. 5, n. 11, p. 5471, doi. 10.1038/ncomms6471
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- Publication type:
- Article
Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 5, p. 1313, doi. 10.1093/gbe/evv066
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- Publication type:
- Article
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape.
- Published in:
- Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1589, doi. 10.1093/gbe/evu120
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- Publication type:
- Article
Whole-Genome Sequencing for National Surveillance of Shiga Toxin-Producing Escherichia coli O157.
- Published in:
- Clinical Infectious Diseases, 2015, v. 61, n. 3, p. 305, doi. 10.1093/cid/civ318
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- Publication type:
- Article
Modelling infectious disease — time to think outside the box?
- Published in:
- Nature Reviews Microbiology, 2006, v. 4, n. 4, p. 307, doi. 10.1038/nrmicro1386
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- Publication type:
- Article
Weak Epistasis May Drive Adaptation in Recombining Bacteria.
- Published in:
- Genetics, 2018, v. 208, n. 3, p. 1247, doi. 10.1534/genetics.117.300662
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- Publication type:
- Article
The Distribution of Pairwise Genetic Distances: A Tool for Investigating Disease Transmission.
- Published in:
- Genetics, 2014, v. 198, n. 4, p. 1395, doi. 10.1534/genetics.114.171538
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- Publication type:
- Article
Coronavirus Disease 2019 Vaccine Impact on Rates of Severe Acute Respiratory Syndrome Coronavirus 2 Cases and Postvaccination Strain Sequences Among Health Care Workers at an Urban Academic Medical Center: A Prospective Cohort Study.
- Published in:
- Open Forum Infectious Diseases, 2021, v. 8, n. 10, p. 1, doi. 10.1093/ofid/ofab465
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- Publication type:
- Article
561. Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in Two Cohorts of High-Risk Military Trainees.
- Published in:
- Open Forum Infectious Diseases, 2019, v. 6, p. S266, doi. 10.1093/ofid/ofz360.630
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- Publication type:
- Article
The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.67113
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- Publication type:
- Article
Genomic epidemiology of meticillin-resistant Staphylococcus aureus ST22 widespread in communities of the Gaza Strip, 2009.
- Published in:
- Eurosurveillance (15607917), 2018, v. 23, n. 34, p. 15, doi. 10.2807/1560-7917.ES.2018.23.34.17-00592
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- Publication type:
- Article
Population genomics of post-vaccine changes in pneumococcal epidemiology.
- Published in:
- Nature Genetics, 2013, v. 45, n. 6, p. 656, doi. 10.1038/ng.2625
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- Publication type:
- Article
Selective and Genetic Constraints on Pneumococcal Serotype Switching.
- Published in:
- PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005095
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- Publication type:
- Article
Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pgen.1004547
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- Publication type:
- Article
Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004300
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- Publication type:
- Article
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae.
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- PLoS Biology, 2020, v. 18, n. 10, p. 1, doi. 10.1371/journal.pbio.3000878
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- Publication type:
- Article
Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data.
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- PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003549
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- Publication type:
- Article
Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000455
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- Publication type:
- Article
Estimated preventable COVID-19-associated deaths due to non-vaccination in the United States.
- Published in:
- European Journal of Epidemiology, 2023, v. 38, n. 11, p. 1125, doi. 10.1007/s10654-023-01006-3
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- Publication type:
- Article
Transmission of SARS-CoV-2 before and after symptom onset: impact of nonpharmaceutical interventions in China.
- Published in:
- European Journal of Epidemiology, 2021, v. 36, n. 4, p. 429, doi. 10.1007/s10654-021-00746-4
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- Publication type:
- Article
Assessing the age specificity of infection fatality rates for COVID-19: systematic review, meta-analysis, and public policy implications.
- Published in:
- European Journal of Epidemiology, 2020, v. 35, n. 12, p. 1123, doi. 10.1007/s10654-020-00698-1
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- Publication type:
- Article
COVID-19: US federal accountability for entry, spread, and inequities—lessons for the future.
- Published in:
- European Journal of Epidemiology, 2020, v. 35, n. 11, p. 995, doi. 10.1007/s10654-020-00689-2
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- Publication type:
- Article
An omics-based framework for assessing the health risk of antimicrobial resistance genes.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25096-3
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- Publication type:
- Article
Biomedical Ph.D. Students Enrolled in Two Elite Universities in the United Kingdom and the United States Report Adopting Multiple Learning Relationships.
- Published in:
- PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0103075
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- Publication type:
- Article
Historical Zoonoses and Other Changes in Host Tropism of <i>Staphylococcus aureus</i>, Identified by Phylogenetic Analysis of a Population Dataset
- Published in:
- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062369
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- Publication type:
- Article
Microbiology: Microbiome science needs a healthy dose of scepticism.
- Published in:
- Nature, 2014, v. 512, n. 7514, p. 247, doi. 10.1038/512247a
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- Publication type:
- Article
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals.
- Published in:
- Molecular Ecology, 2014, v. 23, n. 10, p. 2442, doi. 10.1111/mec.12742
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- Publication type:
- Article
Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced
- Published in:
- BMC Infectious Diseases, 2015, v. 15, n. 1, p. 68, doi. 10.1186/s12879-015-0797-z
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- Publication type:
- Article
Detection of recombination events in bacterial genomes from large population samples.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr928
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- Publication type:
- Article
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-44199-7
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- Publication type:
- Article
Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.
- Published in:
- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0274-3
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- Publication type:
- Article
Antibiotics in agriculture and the risk to human health: how worried should we be?
- Published in:
- Evolutionary Applications, 2015, v. 8, n. 3, p. 240, doi. 10.1111/eva.12185
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- Publication type:
- Article
Optimal SARS-CoV-2 vaccine allocation using real-time attack-rate estimates in Rhode Island and Massachusetts.
- Published in:
- 2021
- By:
- Publication type:
- journal article
From bacterial genomics to clinical epidemiology: an interview with Bill Hanage.
- Published in:
- BMC Biology, 2018, v. 16, n. 1, p. 1, doi. 10.1186/s12915-018-0588-2
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- Publication type:
- Article
Evolution via recombination: Cell-to-cell contact facilitates larger recombination events in Streptococcus pneumoniae.
- Published in:
- PLoS Genetics, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.pgen.1007410
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- Publication type:
- Article
Estimating the hospitalization burden associated with influenza and respiratory syncytial virus in New York City, 2003-2011.
- Published in:
- Influenza & Other Respiratory Viruses, 2015, v. 9, n. 5, p. 225, doi. 10.1111/irv.12325
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- Publication type:
- Article