Works by Han, Mira V

Results: 24

A novel splicing graph allows a direct comparison between exon-based and splice junction–based approaches to alternative splicing detection Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf204

By:

Aquino, Jelard;
Witoslawski, Daniel;
Park, Steve;
Holder, Jessica;
Amei, Amei;
Han, Mira V

Publication type:

Article

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.

Published in:

Nature, 2007, v. 450, n. 7167, p. 219, doi. 10.1038/nature06340

By:

Stark, Alexander;
Lin, Michael F.;
Kheradpour, Pouya;
Pedersen, Jakob S.;
Parts, Leopold;
Carlson, Joseph W.;
Crosby, Madeline A.;
Rasmussen, Matthew D.;
Roy, Sushmita;
Deoras, Ameya N.;
Ruby, J. Graham;
Brennecke, Julius;
Hodges, Emily;
Hinrichs, Angie S.;
Caspi, Anat;
Paten, Benedict;
Seung-Won Park;
Han, Mira V.;
Maeder, Morgan L.;
Polansky, Benjamin J.

Publication type:

Article

Supervised learning of enhancer–promoter specificity based on genome-wide perturbation studies highlights areas for improvement in learning.

Published in:

Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae367

By:

Barth, Dylan;
Van, Richard;
Cardwell, Jonathan;
Han, Mira V

Publication type:

Article

Correction to: Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements.

Published in:

2019

By:

Chung, Nicky;
Jonaid, G. M.;
Quinton, Sophia;
Ross, Austin;
Sexton, Corinne E.;
Alberto, Adrian;
Clymer, Cody;
Churchill, Daphnie;
Navarro Leija, Omar;
Han, Mira V.

Publication type:

Correction Notice

Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0180-5

By:

Chung, Nicky;
Jonaid, G. M.;
Quinton, Sophia;
Ross, Austin;
Sexton, Corinne E.;
Alberto, Adrian;
Clymer, Cody;
Churchill, Daphnie;
Navarro Leija, Omar;
Han, Mira V.

Publication type:

Article

Paired-end mappability of transposable elements in the human genome.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0172-5

By:

Sexton, Corinne E.;
Han, Mira V.

Publication type:

Article

Gene Family Evolution across 12 Drosophila Genomes.

Published in:

PLoS Genetics, 2007, v. 3, n. 11, p. 1235, doi. 10.1371/journal.pgen.0030197

By:

Hahn, Matthew W.;
Han, Mira V.;
Sang-Gook Han

Publication type:

Article

Asymmetrical Evolution of Promoter Methylation of Mammalian Genes after Duplication.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 12, p. 1, doi. 10.1093/molbev/msae259

By:

de la Fuente, Mercedes;
Mendizabal, Isabel;
Han, Mira V;
Yi, Soojin V;
Alvarez-Ponce, David

Publication type:

Article

Genome-Wide Analysis of Starvation-Selected Drosophila melanogaster--A Genetic Model of Obesity.

Published in:

Molecular Biology & Evolution, 2018, v. 35, n. 1, p. 50, doi. 10.1093/molbev/msx254

By:

Hardy, Christopher M;
Burke, Molly K;
Everett, Logan J;
Han, Mira V;
Lantz, Kathryn M;
Gibbs, Allen G

Publication type:

Article

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 8, p. 1987, doi. 10.1093/molbev/mst100

By:

Han, Mira V.;
Thomas, Gregg W.C.;
Lugo-Martinez, Jose;
Hahn, Matthew W.

Publication type:

Article

BioEssays 12/2019.

Published in:

BioEssays, 2019, v. 41, n. 12, p. N.PAG, doi. 10.1002/bies.201970122

By:

Trimidal, Sara G.;
Benjamin, Ronald;
Bae, Ji Eun;
Han, Mira V.;
Kong, Elizabeth;
Singer, Aaron;
Williams, Tyler S.;
Yang, Bing;
Schiller, Martin R.

Publication type:

Article

Can Designer Indels Be Tailored by Gene Editing?: Can Indels Be Customized?

Published in:

BioEssays, 2019, v. 41, n. 12, p. N.PAG, doi. 10.1002/bies.201900126

By:

Trimidal, Sara G.;
Benjamin, Ronald;
Bae, Ji Eun;
Han, Mira V.;
Kong, Elizabeth;
Singer, Aaron;
Williams, Tyler S.;
Yang, Bing;
Schiller, Martin R.

Publication type:

Article

Machine Learning Approaches for Fracture Risk Assessment: A Comparative Analysis of Genomic and Phenotypic Data in 5130 Older Men.

Published in:

Calcified Tissue International, 2020, v. 107, n. 4, p. 353, doi. 10.1007/s00223-020-00734-y

By:

Wu, Qing;
Nasoz, Fatma;
Jung, Jongyun;
Bhattarai, Bibek;
Han, Mira V.

Publication type:

Article

Genome wide clustering on integrated chromatin states and Micro-C contacts reveals chromatin interaction signatures.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 4, p. 1, doi. 10.1093/nargab/lqae136

By:

Sexton, Corinne E;
Victor Paul, Sylvia;
Barth, Dylan;
Han, Mira V

Publication type:

Article

Machine learning approaches for the prediction of bone mineral density by using genomic and phenotypic data of 5130 older men.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83828-3

By:

Wu, Qing;
Nasoz, Fatma;
Jung, Jongyun;
Bhattarai, Bibek;
Han, Mira V.;
Greenes, Robert A.;
Saag, Kenneth G.

Publication type:

Article

Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions.

Published in:

BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-05808-9

By:

Bataller, Santiago;
Davis, James A.;
Gu, Lingkun;
Baca, Sophia;
Chen, Gaelan;
Majid, Azeem;
Villacastin, Anne J.;
Barth, Dylan;
Han, Mira V.;
Rushton, Paul J.;
Shen, Qingxi J.

Publication type:

Article

Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions.

Published in:

BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-05808-9

By:

Bataller, Santiago;
Davis, James A.;
Gu, Lingkun;
Baca, Sophia;
Chen, Gaelan;
Majid, Azeem;
Villacastin, Anne J.;
Barth, Dylan;
Han, Mira V.;
Rushton, Paul J.;
Shen, Qingxi J.

Publication type:

Article

Inferring the History of Interchromosomal Gene Transposition in Drosophila Using n-Dimensional Parsimony.

Published in:

Genetics, 2012, v. 190, n. 2, p. 813, doi. 10.1534/genetics.111.135947

By:

Han, Mira V.;
Hahn, Matthew W.

Publication type:

Article

DEVELOPMENTAL DECOUPLING OF ALTERNATIVE PHENOTYPES: INSIGHTS FROM THE TRANSCRIPTOMES OF HORN-POLYPHENIC BEETLES.

Published in:

Evolution, 2011, v. 65, n. 1, p. 231, doi. 10.1111/j.1558-5646.2010.01106.x

By:

Snell-Rood, Emilie C.;
Cash, Amy;
Han, Mira V.;
Kijimoto, Teiya;
Andrews, Justen;
Moczek, Armin P.

Publication type:

Article

THE CONTRIBUTION OF GENE MOVEMENT TO THE “TWO RULES OF SPECIATION”.

Published in:

Evolution, 2010, v. 64, n. 6, p. 1541, doi. 10.1111/j.1558-5646.2010.00990.x

By:

Moyle, Leonie C.;
Muir, Christopher D.;
Han, Mira V.;
Hahn, Matthew W.

Publication type:

Article

A Complex Suite of Forces Drives Gene Traffic from Drosophila X Chromosomes.

Published in:

Genome Biology & Evolution, 2009, v. 1, p. 176, doi. 10.1093/gbe/evp018

By:

Meisel, Richard P.;
Han, Mira V.;
Hahn, Matthew W.

Publication type:

Article

A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies.

Published in:

BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05801-x

By:

Van, Richard;
Alvarez, Daniel;
Mize, Travis;
Gannavarapu, Sravani;
Chintham Reddy, Lohitha;
Nasoz, Fatma;
Han, Mira V.

Publication type:

Article

Classification of schizophrenia, bipolar disorder and major depressive disorder with comorbid traits and deep learning algorithms.

Published in:

Schizophrenia, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41537-025-00564-7

By:

Chen, Xiangning;
Lu, Yimei;
Cue, Joan Manuel;
Han, Mira V.;
Nimgaonkar, Vishwajit L.;
Weinberger, Daniel R.;
Han, Shizhong;
Zhao, Zhongming;
Chen, Jingchun

Publication type:

Article

Characterizing gene movements between chromosomes in Drosophila.

Published in:

Fly (1933-6934), 2012, v. 6, n. 2, p. 121, doi. 10.4161/fly.20144

By:

Han, Mira V.

Publication type:

Article