Works by Han, Mira V

Results: 23

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Published in:
Nature, 2007, v. 450, n. 7167, p. 219, doi. 10.1038/nature06340
By:
- Stark, Alexander;
- Lin, Michael F.;
- Kheradpour, Pouya;
- Pedersen, Jakob S.;
- Parts, Leopold;
- Carlson, Joseph W.;
- Crosby, Madeline A.;
- Rasmussen, Matthew D.;
- Roy, Sushmita;
- Deoras, Ameya N.;
- Ruby, J. Graham;
- Brennecke, Julius;
- Hodges, Emily;
- Hinrichs, Angie S.;
- Caspi, Anat;
- Paten, Benedict;
- Seung-Won Park;
- Han, Mira V.;
- Maeder, Morgan L.;
- Polansky, Benjamin J.
Publication type:
Article
Supervised learning of enhancer–promoter specificity based on genome-wide perturbation studies highlights areas for improvement in learning.
Published in:
Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae367
By:
- Barth, Dylan;
- Van, Richard;
- Cardwell, Jonathan;
- Han, Mira V
Publication type:
Article
BioEssays 12/2019.
Published in:
BioEssays, 2019, v. 41, n. 12, p. N.PAG, doi. 10.1002/bies.201970122
By:
- Trimidal, Sara G.;
- Benjamin, Ronald;
- Bae, Ji Eun;
- Han, Mira V.;
- Kong, Elizabeth;
- Singer, Aaron;
- Williams, Tyler S.;
- Yang, Bing;
- Schiller, Martin R.
Publication type:
Article
Can Designer Indels Be Tailored by Gene Editing?: Can Indels Be Customized?
Published in:
BioEssays, 2019, v. 41, n. 12, p. N.PAG, doi. 10.1002/bies.201900126
By:
- Trimidal, Sara G.;
- Benjamin, Ronald;
- Bae, Ji Eun;
- Han, Mira V.;
- Kong, Elizabeth;
- Singer, Aaron;
- Williams, Tyler S.;
- Yang, Bing;
- Schiller, Martin R.
Publication type:
Article
A Complex Suite of Forces Drives Gene Traffic from Drosophila X Chromosomes.
Published in:
Genome Biology & Evolution, 2009, v. 1, p. 176, doi. 10.1093/gbe/evp018
By:
- Meisel, Richard P.;
- Han, Mira V.;
- Hahn, Matthew W.
Publication type:
Article
Characterizing gene movements between chromosomes in Drosophila.
Published in:
Fly, 2012, v. 6, n. 2, p. 121, doi. 10.4161/fly.20144
By:
- Han, Mira V.
Publication type:
Article
Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions.
Published in:
BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-05808-9
By:
- Bataller, Santiago;
- Davis, James A.;
- Gu, Lingkun;
- Baca, Sophia;
- Chen, Gaelan;
- Majid, Azeem;
- Villacastin, Anne J.;
- Barth, Dylan;
- Han, Mira V.;
- Rushton, Paul J.;
- Shen, Qingxi J.
Publication type:
Article
Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions.
Published in:
BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-05808-9
By:
- Bataller, Santiago;
- Davis, James A.;
- Gu, Lingkun;
- Baca, Sophia;
- Chen, Gaelan;
- Majid, Azeem;
- Villacastin, Anne J.;
- Barth, Dylan;
- Han, Mira V.;
- Rushton, Paul J.;
- Shen, Qingxi J.
Publication type:
Article
A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies.
Published in:
BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05801-x
By:
- Van, Richard;
- Alvarez, Daniel;
- Mize, Travis;
- Gannavarapu, Sravani;
- Chintham Reddy, Lohitha;
- Nasoz, Fatma;
- Han, Mira V.
Publication type:
Article
Gene Family Evolution across 12 Drosophila Genomes.
Published in:
PLoS Genetics, 2007, v. 3, n. 11, p. 1235, doi. 10.1371/journal.pgen.0030197
By:
- Hahn, Matthew W.;
- Han, Mira V.;
- Sang-Gook Han
Publication type:
Article
Asymmetrical Evolution of Promoter Methylation of Mammalian Genes after Duplication.
Published in:
Molecular Biology & Evolution, 2024, v. 41, n. 12, p. 1, doi. 10.1093/molbev/msae259
By:
- de la Fuente, Mercedes;
- Mendizabal, Isabel;
- Han, Mira V;
- Yi, Soojin V;
- Alvarez-Ponce, David
Publication type:
Article
Classification of schizophrenia, bipolar disorder and major depressive disorder with comorbid traits and deep learning algorithms.
Published in:
Schizophrenia, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41537-025-00564-7
By:
- Chen, Xiangning;
- Lu, Yimei;
- Cue, Joan Manuel;
- Han, Mira V.;
- Nimgaonkar, Vishwajit L.;
- Weinberger, Daniel R.;
- Han, Shizhong;
- Zhao, Zhongming;
- Chen, Jingchun
Publication type:
Article
Inferring the History of Interchromosomal Gene Transposition in Drosophila Using n-Dimensional Parsimony.
Published in:
Genetics, 2012, v. 190, n. 2, p. 813, doi. 10.1534/genetics.111.135947
By:
- Han, Mira V.;
- Hahn, Matthew W.
Publication type:
Article
DEVELOPMENTAL DECOUPLING OF ALTERNATIVE PHENOTYPES: INSIGHTS FROM THE TRANSCRIPTOMES OF HORN-POLYPHENIC BEETLES.
Published in:
Evolution, 2011, v. 65, n. 1, p. 231, doi. 10.1111/j.1558-5646.2010.01106.x
By:
- Snell-Rood, Emilie C.;
- Cash, Amy;
- Han, Mira V.;
- Kijimoto, Teiya;
- Andrews, Justen;
- Moczek, Armin P.
Publication type:
Article
THE CONTRIBUTION OF GENE MOVEMENT TO THE “TWO RULES OF SPECIATION”.
Published in:
Evolution, 2010, v. 64, n. 6, p. 1541, doi. 10.1111/j.1558-5646.2010.00990.x
By:
- Moyle, Leonie C.;
- Muir, Christopher D.;
- Han, Mira V.;
- Hahn, Matthew W.
Publication type:
Article
Genome wide clustering on integrated chromatin states and Micro-C contacts reveals chromatin interaction signatures.
Published in:
NAR Genomics & Bioinformatics, 2024, v. 6, n. 4, p. 1, doi. 10.1093/nargab/lqae136
By:
- Sexton, Corinne E;
- Victor Paul, Sylvia;
- Barth, Dylan;
- Han, Mira V
Publication type:
Article
Genome-Wide Analysis of Starvation-Selected Drosophila melanogaster--A Genetic Model of Obesity.
Published in:
Molecular Biology & Evolution, 2018, v. 35, n. 1, p. 50, doi. 10.1093/molbev/msx254
By:
- Hardy, Christopher M;
- Burke, Molly K;
- Everett, Logan J;
- Han, Mira V;
- Lantz, Kathryn M;
- Gibbs, Allen G
Publication type:
Article
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3.
Published in:
Molecular Biology & Evolution, 2013, v. 30, n. 8, p. 1987, doi. 10.1093/molbev/mst100
By:
- Han, Mira V.;
- Thomas, Gregg W.C.;
- Lugo-Martinez, Jose;
- Hahn, Matthew W.
Publication type:
Article
Machine learning approaches for the prediction of bone mineral density by using genomic and phenotypic data of 5130 older men.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83828-3
By:
- Wu, Qing;
- Nasoz, Fatma;
- Jung, Jongyun;
- Bhattarai, Bibek;
- Han, Mira V.;
- Greenes, Robert A.;
- Saag, Kenneth G.
Publication type:
Article
Correction to: Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements.
Published in:
2019
By:
- Chung, Nicky;
- Jonaid, G. M.;
- Quinton, Sophia;
- Ross, Austin;
- Sexton, Corinne E.;
- Alberto, Adrian;
- Clymer, Cody;
- Churchill, Daphnie;
- Navarro Leija, Omar;
- Han, Mira V.
Publication type:
Correction Notice
Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements.
Published in:
Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0180-5
By:
- Chung, Nicky;
- Jonaid, G. M.;
- Quinton, Sophia;
- Ross, Austin;
- Sexton, Corinne E.;
- Alberto, Adrian;
- Clymer, Cody;
- Churchill, Daphnie;
- Navarro Leija, Omar;
- Han, Mira V.
Publication type:
Article
Paired-end mappability of transposable elements in the human genome.
Published in:
Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0172-5
By:
- Sexton, Corinne E.;
- Han, Mira V.
Publication type:
Article
Machine Learning Approaches for Fracture Risk Assessment: A Comparative Analysis of Genomic and Phenotypic Data in 5130 Older Men.
Published in:
Calcified Tissue International, 2020, v. 107, n. 4, p. 353, doi. 10.1007/s00223-020-00734-y
By:
- Wu, Qing;
- Nasoz, Fatma;
- Jung, Jongyun;
- Bhattarai, Bibek;
- Han, Mira V.
Publication type:
Article