Works by Han, Cliff

Results: 57

Catecholamine exposure and the gut microbiota in obstructive sleep apnea.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19203

By:

Alcock, Joe;
Lin, Dongdong;
Setty, Prashanth;
Brown, Lee K.;
Dichosa, Armand E.K.;
Burnett, Benjamin J.;
Han, Cliff S.;
Lin, Henry C.

Publication type:

Article

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0194-2

By:

Anderson, Iain J.;
DasSarma, Priya;
Lucas, Susan;
Copeland, Alex;
Lapidus, Alla;
Del Rio, Tijana Glavina;
Tice, Hope;
Dalin, Eileen;
Bruce, David C.;
Goodwin, Lynne;
Pitluck, Sam;
Sims, David;
Brettin, Thomas S.;
Detter, John C.;
Han, Cliff S.;
Larimer, Frank;
Hauser, Loren;
Land, Miriam;
Ivanova, Natalia;
Richardson, Paul

Publication type:

Article

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x

By:

Kappler, Ulrike;
Davenport, Karen;
Beatson, Scott;
Lapidus, Alla;
Pan, Chongle;
Han, Cliff;
del Carmen Montero-Calasanz, Maria;
Land, Miriam;
Hauser, Loren;
Rohde, Manfred;
Göker, Markus;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0115-9

By:

Tiwari, Ravi;
Howieson, John;
Yates, Ron;
Tian, Rui;
Held, Britanny;
Tapia, Roxanne;
Han, Cliff;
Seshadri, Rekha;
Reddy, T.;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0049-2

By:

Reeve, Wayne;
Sullivan, John;
Ronson, Clive;
Rui Tian;
Munk, Christine;
Han, Cliff;
Reddy, T. B. K.;
Seshadri, Rekha;
Woyke, Tanja;
Pati, Amrita;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos

Publication type:

Article

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x

By:

Shetty, Ameesha R.;
de Gannes, Vidya;
Obi, Chioma C.;
Lucas, Susan;
Lapidus, Alla;
Jan-Fang Cheng;
Goodwin, Lynne A.;
Pitluck, Samuel;
Peters, Linda;
Mikhailova, Natalia;
Teshima, Hazuki;
Han, Cliff;
Tapia, Roxanne;
Land, Miriam;
Hauser, Loren J.;
Kyrpides, Nikos;
Ivanova, Natalia;
Pagani, Ioanna;
Chain, Patrick S. G.;
Denef, Vincent J

Publication type:

Article

Genome sequence of Ensifer arboris strain LMG 14919; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 473, doi. 10.4056/sigs.4828625

By:

Reeve, Wayne;
Tian, Rui;
Bräu, Lambert;
Goodwin, Lynne;
Munk, Christine;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavrommatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Willems, Anne

Publication type:

Article

Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 527, doi. 10.4056/sigs.4988693

By:

Terpolilli, Jason;
Rui, Tian;
Yates, Ron;
Howieson, John;
Poole, Philip;
Munk, Christine;
Tapia, Roxanne;
Han, Cliff;
Markowitz, Victor;
Tatiparthi, Reddy;
Mavrommatis, Konstantinos;
Ivanova, Natalia;
Pati, Amrita;
Goodwin, Lynne;
Woyke, Tanja;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 540, doi. 10.4056/sigs.4548266

By:

Reeve, Wayne;
Ardley, Julie;
Tian, Rui;
Meyer, Sofie;
Terpolilli, Jason;
Melino, Vanessa;
Tiwari, Ravi;
Yates, Ronald;
O'Hara, Graham;
Howieson, John;
Ninawi, Mohamed;
Zhang, Xiaojing;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min

Publication type:

Article

Complete genome sequence of Anabaena variabilis ATCC 29413.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 562, doi. 10.4056/sigs.3899418

By:

Thiel, Teresa;
Pratte, Brenda;
Zhong, Jinshun;
Goodwin, Lynne;
Copeland, Alex;
Lucas, Susan;
Han, Cliff;
Pitluck, Sam;
Land, Miriam;
Kyrpides, Nikos;
Woyke, Tanja

Publication type:

Article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968

By:

Göker, Markus;
Lu, Megan;
Fiebig, Anne;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383

By:

Göker, Markus;
Spring, Stefan;
Scheuner, Carmen;
Anderson, Iain;
Zeytun, Ahmet;
Nolan, Matt;
Lucas, Susan;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita

Publication type:

Article

Genome sequence of Microvirga lupini strain LUT6, a novel Lupinus alphaproteobacterial microsymbiont from Texas.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1159, doi. 10.4056/sigs.5249382

By:

Reeve, Wayne;
Parker, Matthew;
Tian, Rui;
Goodwin, Lynne;
Teshima, Hazuki;
Tapia, Roxanne;
Han, Cliff;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos

Publication type:

Article

Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 273, doi. 10.4056/sigs.4518260

By:

Reeve, Wayne;
Terpolilli, Jason;
Melino, Vanessa;
Ardley, Julie;
Tian, Rui;
Meyer, Sofie;
Tiwari, Ravi;
Yates, Ronald;
O'Hara, Graham;
Howieson, John;
Ninawi, Mohamed;
Teshima, Hazuki;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min

Publication type:

Article

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 243, doi. 10.4056/sigs.4488254

By:

Reeve, Wayne;
Tian, Rui;
Meyer, Sofie;
Melino, Vanessa;
Terpolilli, Jason;
Ardley, Julie;
Tiwari, Ravi;
Howieson, John;
Yates, Ronald;
O'Hara, Graham;
Ninawi, Mohamed;
Teshima, Hazuki;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min

Publication type:

Article

Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 254, doi. 10.4056/sigs.4498256

By:

Reeve, Wayne;
Meyer, Sofie;
Terpolilli, Jason;
Melino, Vanessa;
Ardley, Julie;
Tian, Rui;
Tiwari, Ravi;
Howieson, John;
Yates, Ronald;
O'Hara, Graham;
Ninawi, Mohamed;
Lu, Megan;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min

Publication type:

Article

Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 264, doi. 10.4056/sigs.4508258

By:

Reeve, Wayne;
Terpolilli, Jason;
Melino, Vanessa;
Ardley, Julie;
Tian, Rui;
Meyer, Sofie;
Tiwari, Ravi;
Yates, Ronald;
O'Hara, Graham;
Howieson, John;
Ninawi, Mohamed;
Held, Brittany;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min

Publication type:

Article

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 325, doi. 10.4056/sigs.3797438

By:

Galardini, Marco;
Bazzicalupo, Marco;
Biondi, Emanuele;
Brambilla, Eveline;
Brilli, Matteo;
Bruce, David;
Chain, Patrick;
Chen, Amy;
Daligault, Hajnalka;
Davenport, Karen;
Deshpande, Shweta;
Detter, John;
Goodwin, Lynne;
Han, Cliff;
Han, James;
Huntemann, Marcel;
Ivanova, Natalia;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Markowitz, Victor

Publication type:

Article

Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 283, doi. 10.4056/sigs.4528262

By:

Reeve, Wayne;
Melino, Vanessa;
Ardley, Julie;
Tian, Rui;
Meyer, Sofie;
Terpolilli, Jason;
Tiwari, Ravi;
Yates, Ronald;
O'Hara, Graham;
Howieson, John;
Ninawi, Mohamed;
Held, Brittany;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min

Publication type:

Article

Genome sequence of the Lebeckia ambigua-nodulating ' Burkholderia sprentiae' strain WSM5005.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 385, doi. 10.4056/sigs.4558268

By:

Reeve, Wayne;
Meyer, Sofie;
Terpolilli, Jason;
Melino, Vanessa;
Ardley, Julie;
Rui, Tian;
Tiwari, Ravi;
Howieson, John;
Yates, Ron;
O'Hara, Graham;
Lu, Megan;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min;
Mavromatis, Konstantinos

Publication type:

Article

Complete genome sequence of Mesorhizobium australicum type strain (WSM2073).

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 410, doi. 10.4056/sigs.4568282

By:

Reeve, Wayne;
Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Ninawi, Mohamed;
Gu, Wei;
Goodwin, Lynne;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Copeland, Alex;
Liolios, Konstantinos;
Chen, Amy;
Markowitz, Victor;
Pati, Amrita;
Mavromatis, Konstantinos;
Woyke, Tanja;
Kyrpides, Nikos;
Ivanova, Natalia

Publication type:

Article

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134).

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 28, doi. 10.4056/sigs.4207886

By:

Meier-Kolthoff, Jan;
Lu, Megan;
Huntemann, Marcel;
Lucas, Susan;
Lapidus, Alla;
Copeland, Alex;
Pitluck, Sam;
Goodwin, Lynne;
Han, Cliff;
Tapia, Roxanne;
Pötter, Gabriele;
Land, Miriam;
Ivanova, Natalia;
Rohde, Manfred;
Göker, Markus;
Detter, John;
Woyke, Tanja;
Kyrpides, Nikos;
Klenk, Hans-Peter

Publication type:

Article

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701) and emended description of the genus Thermanaerovibrio.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 57, doi. 10.4056/sigs.4237901

By:

Palaniappan, Krishna;
Meier-Kolthoff, Jan;
Teshima, Hazuki;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Rohde, Manfred

Publication type:

Article

Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 83, doi. 10.4056/sigs.4338002

By:

Anderson, Iain;
Teshima, Huzuki;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Complete genome sequence of Arthrobacter sp. strain FB24.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 106, doi. 10.4056/sigs.4438185

By:

Nakatsu, Cindy;
Barabote, Ravi;
Thompson, Sue;
Bruce, David;
Detter, Chris;
Brettin, Thomas;
Han, Cliff;
Beasley, Federico;
Chen, Weimin;
Konopka, Allan;
Xie, Gary

Publication type:

Article

Complete genome sequence of Halorhodospira halophila SL1.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 206, doi. 10.4056/sigs.3677284

By:

Challacombe, Jean;
Majid, Sophia;
Deole, Ratnakar;
Brettin, Thomas;
Bruce, David;
Delano, Susana;
Detter, John;
Gleasner, Cheryl;
Han, Cliff;
Misra, Monica;
Reitenga, Krista;
Mikhailova, Natalia;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Land, Miriam;
Saunders, Elizabeth;
Tapia, Roxanne;
Lapidus, Alla;
Ivanova, Natalia

Publication type:

Article

Complete genome sequence of Dehalobacter restrictus PER-K23.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 375, doi. 10.4056/sigs.3787426

By:

Kruse, Thomas;
Maillard, Julien;
Goodwin, Lynne;
Woyke, Tanja;
Teshima, Hazuki;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Huntemann, Marcel;
Wei, Chia-Lin;
Han, James;
Chen, Amy;
Kyrpides, Nikos;
Szeto, Ernest;
Markowitz, Victor;
Ivanova, Natalia;
Pagani, Ioanna;
Pati, Amrita;
Pitluck, Sam

Publication type:

Article

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 88, doi. 10.4056/sigs.3096473

By:

Abt, Birte;
Göker, Markus;
Scheuner, Carmen;
Han, Cliff;
Lu, Megan;
Misra, Monica;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Mikhailova, Natalia

Publication type:

Article

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 37, doi. 10.4056/sigs.3537045

By:

Stackebrandt, Erko;
Chertkov, Olga;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Han, Cliff;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Bruce, David;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Huntemann, Marcel;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659

By:

Spring, Stefan;
Visser, Michael;
Lu, Megan;
Copeland, Alex;
Lapidus, Alla;
Lucas, Susan;
Jan-Fang Cheng;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne A.;
Pitluck, Sam;
Ivanova, Natalia;
Land, Miriam;
Hauser, Loren;
Larimer, Frank;
Rohde, Manfred;
Göker, Markus;
Detter, John C.;
Kyrpides, Nikos C.;
Woyke, Tanja

Publication type:

Article

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 210, doi. 10.4056/sigs.3117229

By:

Anderson, Iain;
Munk, Christine;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Tice, Hope;
Del Rio, Tijana Glavina;
Jan-Fang Cheng;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 107, doi. 10.4056/sigs.3216895

By:

Riedel, Thomas;
Held, Brittany;
Nolan, Matt;
Lucas, Susan;
Lapidus, Alla;
Tice, Hope;
Del Rio, Tijana Glavina;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne A.;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 120, doi. 10.4056/sigs.3296896

By:

Riedel, Thomas;
Held, Brittany;
Nolan, Matt;
Lucas, Susan;
Lapidus, Alla;
Tice, Hope;
Del Rio, Tijana Glavina;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne A.;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T).

Published in:

2012

By:

Kappler, Ulrike;
Davenport, Karen;
Beatson, Scott;
Lucas, Susan;
Lapidus, Alla;
Copeland, Alex;
Berry, Kerrie W.;
Del Rio, Tijana Glavina;
Hammon, Nancy;
Dalin, Eileen;
Tice, Hope;
Pitluck, Sam;
Richardson, Paul;
Bruce, David;
Goodwin, Lynne A.;
Han, Cliff;
Tapia, Roxanne;
Detter, John C.;
Chang, Yun-juan;
Jeffries, Cynthia D.

Publication type:

Art Reproduction

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 22, doi. 10.4056/sigs.2966299

By:

Neupane, Saraswoti;
Finlay, Roger D.;
Kyrpides, Nikos C.;
Goodwin, Lynne;
Alström, Sadhna;
Lucas, Susan;
Land, Miriam;
Han, James;
Lapidus, Alla;
Jan-Fang Cheng;
Bruce, David;
Pitluck, Sam;
Peters, Lin;
Ovchinnikova, Galina;
Held, Brittany;
Cliff Han;
Detter, John C.;
Tapia, Roxanne;
Hauser, Loren;
Ivanova, Natalia

Publication type:

Article

The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.

Published in:

2012

By:

Aklujkar, Muktak;
Haveman, Shelley A.;
DiDonato Jr., Raymond;
Chertkov, Olga;
Han, Cliff S.;
Land, Miriam L.;
Brown, Peter;
Lovley, Derek R.

Publication type:

Back Cover

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 1, p. 61, doi. 10.1038/ismej.2009.94

By:

Wagner-Döbler, Irene;
Ballhausen, Britta;
Berger, Martine;
Brinkhoff, Thorsten;
Buchholz, Ina;
Bunk, Boyke;
Cypionka, Heribert;
Daniel, Rolf;
Drepper, Thomas;
Gerdts, Gunnar;
Hahnke, Sarah;
Han, Cliff;
Jahn, Dieter;
Kalhoefer, Daniela;
Kiss, Hajnalka;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Liebl, Wolfgang;
Liesegang, Heiko;
Meincke, Linda

Publication type:

Article

Using phage display selected antibodies to dissect microbiomes for complete de novo genome sequencing of low abundance microbes.

Published in:

BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-270

By:

Close, Devin W.;
Ferrara, Fortunato;
Dichosa, Armand E. K.;
Kumar, Sandeep;
Daughton, Ashlynn R.;
Daligault, Hajnalka E.;
Reitenga, Krista G.;
Velappan, Nileena;
Sanchez, Timothy C.;
Iyer, Srinivas;
Kiss, Csaba;
Han, Cliff S.;
Bradbury, Andrew R. M.

Publication type:

Article

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae.

Published in:

BMC Microbiology, 2010, v. 10, p. 154, doi. 10.1186/1471-2180-10-154

By:

Haley, Bradd J.;
Grim, Christopher J.;
Hasan, Nur A.;
Seon-Young Choi;
Jongsik Chun;
Brettin, Thomas S.;
Bruce, David C.;
Challacombe, Jean F.;
Detter, J. Chris;
Han, Cliff S.;
Huq, Anwar;
Colwell, Rita R.

Publication type:

Article

Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes.

Published in:

Nature Protocols, 2014, v. 9, n. 3, p. 608, doi. 10.1038/nprot.2014.034

By:

Dichosa, Armand E K;
Daughton, Ashlynn R;
Reitenga, Krista G;
Fitzsimons, Michael S;
Han, Cliff S

Publication type:

Article

The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir.

Published in:

Environmental Microbiology Reports, 2010, v. 2, n. 1, p. 208, doi. 10.1111/j.1758-2229.2010.00141.x

By:

Haley, Bradd J.;
Grim, Christopher J.;
Hasan, Nur A.;
Taviani, Elisa;
Chun, Jongsik;
Brettin, Thomas S.;
Bruce, David C.;
Challacombe, Jean F.;
Detter, J. Chris;
Han, Cliff S.;
Huq, Anwar;
Nair, G. Balakrish;
Colwell, Rita R.

Publication type:

Article

The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.

Published in:

Environmental Microbiology, 2010, v. 12, n. 10, p. 2738, doi. 10.1111/j.1462-2920.2010.02242.x

By:

Junier, Pilar;
Junier, Thomas;
Podell, Sheila;
Sims, David R.;
Detter, John C.;
Lykidis, Athanasios;
Han, Cliff S.;
Wigginton, Nicholas S.;
Gaasterland, Terry;
Bernier-Latmani, Rizlan

Publication type:

Article

The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production.

Published in:

Environmental Microbiology, 2010, v. 12, n. 8, p. 2289, doi. 10.1111/j.1462-2920.2010.02237.x

By:

Sieber, Jessica R.;
Sims, David R.;
Han, Cliff;
Kim, Edwin;
Lykidis, Athanasios;
Lapidus, Alla L.;
McDonnald, Erin;
Rohlin, Lars;
Culley, David E.;
Gunsalus, Robert;
McInerney, Michael J.

Publication type:

Article

The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).

Published in:

Environmental Microbiology, 2008, v. 10, n. 10, p. 2550, doi. 10.1111/j.1462-2920.2008.01679.x

By:

Pierce, Elizabeth;
Xie, Gary;
Barabote, Ravi D.;
Saunders, Elizabeth;
Han, Cliff S.;
Detter, John C.;
Richardson, Paul;
Brettin, Thomas S.;
Das, Amaresh;
Ljungdahl, Lars G.;
Ragsdale, Stephen W.

Publication type:

Article

MicroRNAs Suppress NB Domain Genes in Tomato That Confer Resistance to Fusarium oxysporum.

Published in:

PLoS Pathogens, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.ppat.1004464

By:

Ouyang, Shouqiang;
Park, Gyungsoon;
Atamian, Hagop S.;
Han, Cliff S.;
Stajich, Jason E.;
Kaloshian, Isgouhi;
Borkovich, Katherine A.

Publication type:

Article

The sequence and analysis of duplication-rich human chromosome 16.

Published in:

Nature, 2004, v. 432, n. 7020, p. 988, doi. 10.1038/nature03187

By:

Martin, Joel;
Han, Cliff;
Gordon, Laurie A.;
Terry, Astrid;
Prabhakar, Shyam;
Xinwei She;
Xie, Gary;
Hellsten, Uffe;
Chan, Yee Man;
Altherr, Michael;
Couronne, Olivier;
Aerts, Andrea;
Bajorek, Eva;
Black, Stacey;
Blumer, Heather;
Branscomb, Elbert;
Brown, Nancy C.;
Bruno, William J.;
Buckingham, Judith M.;
Callen, David F.

Publication type:

Article

Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066971

By:

Oosterkamp, Margreet J.;
Veuskens, Teun;
Talarico Saia, Flávia;
Weelink, Sander A. B.;
Goodwin, Lynne A.;
Daligault, Hajnalka E.;
Bruce, David C.;
Detter, John C.;
Tapia, Roxanne;
Han, Cliff S.;
Land, Miriam L.;
Hauser, Loren J.;
Langenhoff, Alette A. M.;
Gerritse, Jan;
van Berkel, Willem J. H.;
Pieper, Dietmar H.;
Junca, Howard;
Smidt, Hauke;
Schraa, Gosse;
Davids, Mark

Publication type:

Article

Artificial Polyploidy Improves Bacterial Single Cell Genome Recovery.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0037387

By:

Dichosa, Armand E. K.;
Fitzsimons, Michael S.;
Chien-Chi Lo;
Weston, Lea L.;
Preteska, Lara G.;
Snook, Jeremy P.;
Xiaojing Zhang;
Wei Gu;
McMurry, Kim;
Green, Lance D.;
Chain, Patrick S.;
Detter, Chris;
Han, Cliff S.

Publication type:

Article

Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing.

Published in:

PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012303

By:

Fischer, Will;
Ganusov, Vitaly V.;
Giorgi, Elena E.;
Hraber, Peter T.;
Keele, Brandon F.;
Leitner, Thomas;
Han, Cliff S.;
Gleasner, Cheryl D.;
Green, Lance;
Chien-Chi Lo;
Nag, Ambarish;
Wallstrom, Timothy C.;
Shuyi Wang;
McMichael, Andrew J.;
Haynes, Barton F.;
Hahn, Beatrice H.;
Perelson, Alan S.;
Borrow, Persephone;
Shaw, George M.;
Bhattacharya, Tanmoy

Publication type:

Article

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens.

Published in:

PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005797

By:

Anderson, Iain;
Ulrich, Luke E.;
Lupa, Boguslaw;
Susanti, Dwi;
Porat, Iris;
Hooper, Sean D.;
Lykidis, Athanasios;
Sieprawska-Lupa, Magdalena;
Dharmarajan, Lakshmi;
Goltsman, Eugene;
Lapidus, Alla;
Saunders, Elizabeth;
Han, Cliff;
Land, Miriam;
Lucas, Susan;
Mukhopadhyay, Biswarup;
Whitman, William B.;
Woese, Carl;
Bristow, James;
Kyrpides, Nikos

Publication type:

Article