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CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies.
Published in:
Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01431-1
By:
- Neff, Samuel L.;
- Hampton, Thomas H.;
- Puerner, Charles;
- Cengher, Liviu;
- Doing, Georgia;
- Lee, Alexandra J.;
- Koeppen, Katja;
- Cheung, Ambrose L.;
- Hogan, Deborah A.;
- Cramer, Robert A.;
- Stanton, Bruce A.
Publication type:
Article
Gene Expression Profile of Peripheral Blood Lymphocytes from Renal Cell Carcinoma Patients Treated with IL-2, Interferon-α and Dendritic Cell Vaccine.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0050221
By:
- Wolf, Benita;
- Schwarzer, Adrian;
- Côte, Anik L.;
- Hampton, Thomas H.;
- Schwaab, Thomas;
- Huarte, Eduardo;
- Tomlinson, Craig R.;
- Jiang Gui;
- Fisher, Jan L.;
- Fadul, Camilo E.;
- Hamilton, Joshua W.;
- Ernstoff, Marc S.
Publication type:
Article
Regulatory T-Cells and Associated Pathways in Metastatic Renal Cell Carcinoma (mRCC) Patients Undergoing DC-Vaccination and Cytokine-Therapy.
Published in:
PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0046600
By:
- Schwarzer, Adrian;
- Wolf, Benita;
- Fisher, Jan L.;
- Schwaab, Thomas;
- Olek, Sven;
- Baron, Udo;
- Tomlinson, Craig R.;
- Seigne, John D.;
- Crosby, Nancy A.;
- Gui, Jiang;
- Hampton, Thomas H.;
- Fadul, Camilo E.;
- Heaney, John A.;
- Ernstoff, Marc S.
Publication type:
Article
Chronic Exposure to Arsenic in the Drinking Water Alters the Expression of Immune Response Genes in Mouse Lung.
Published in:
Environmental Health Perspectives, 2009, v. 117, n. 7, p. 1108, doi. 10.1289/ehp.0800199
By:
- Kozul, Courtney D.;
- Hampton, Thomas H.;
- Davey, Jennifer C.;
- Gosse, Julie A.;
- Nomikos, Athena P.;
- Eisenhauer, Phillip L.;
- Weiss, Daniel J.;
- Thorpe, Jessica E.;
- Ihnat, Michael A.;
- Hamilton, Joshua W.
Publication type:
Article
Perturbation of Defense Pathways by Low-Dose Arsenic Exposure in Zebrafish Embryos.
Published in:
Environmental Health Perspectives, 2009, v. 117, n. 6, p. 981, doi. 10.1289/ehp.0900555
By:
- Mattingly, Carolyn J.;
- Hampton, Thomas H.;
- Brothers, Kimberly M.;
- Griffin, Nina E.;
- Planchart, Antonio
Publication type:
Article
Natural Selection Canalizes Expression Variation of Environmentally Induced Plasticity-Enabling Genes.
Published in:
Molecular Biology & Evolution, 2014, v. 31, n. 11, p. 3002, doi. 10.1093/molbev/msu241
By:
- Shaw, Joseph R.;
- Hampton, Thomas H.;
- King, Benjamin L.;
- Whitehead, Andrew;
- Galvez, Fernando;
- Gross, Robert H.;
- Keith, Nathan;
- Notch, Emily;
- Jung, Dawoon;
- Glaholt, Stephen P.;
- Chen, Celia Y.;
- Colbourne, John K.;
- Stanton, Bruce A.
Publication type:
Article
Functional and metabolic impairment in cigarette smoke-exposed macrophages is tied to oxidative stress.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46045-7
By:
- Aridgides, Daniel S.;
- Mellinger, Diane L.;
- Armstrong, David A.;
- Hazlett, Haley F.;
- Dessaint, John A.;
- Hampton, Thomas H.;
- Atkins, Graham T.;
- Carroll, James L.;
- Ashare, Alix
Publication type:
Article
Regulatory T cells are not a strong predictor of survival for patients with glioblastoma.
Published in:
Neuro-Oncology, 2015, v. 17, n. 6, p. 801, doi. 10.1093/neuonc/nou363
By:
- Thomas, Alissa A.;
- Fisher, Jan L.;
- Rahme, Gilbert J.;
- Hampton, Thomas H.;
- Baron, Udo;
- Olek, Sven;
- Schwachula, Tim;
- Rhodes, C. Harker;
- Jiang Gui;
- Tafe, Laura J.;
- Tsongalis, Gregory J.;
- Lefferts, Joel A.;
- Wishart, Heather;
- Kleen, Jonathan;
- Miller, Michael;
- Whipple, Chery A.;
- de Abreu, Francine B.;
- Ernstoff, Marc S.;
- Fadul, Camilo E.
Publication type:
Article
Immune modulation effects of concomitant temozolomide and radiation therapy on peripheral blood mononuclear cells in patients with glioblastoma multiforme.
Published in:
Neuro-Oncology, 2011, v. 13, n. 4, p. 393, doi. 10.1093/neuonc/noq204
By:
- Fadul, Camilo E.;
- Fisher, Jan L.;
- Gui, Jiang;
- Hampton, Thomas H.;
- Côté, Anik L.;
- Ernstoff, Marc S.
Publication type:
Article
The Landscape of Extreme Genomic Variation in the Highly Adaptable Atlantic Killifish.
Published in:
Genome Biology & Evolution, 2017, v. 9, n. 3, p. 660, doi. 10.1093/gbe/evx023
By:
- Reid, Noah M.;
- Jackson, Craig E.;
- Gilbert, Don;
- Minx, Patrick;
- Montague, Michael J.;
- Hampton, Thomas H.;
- Helfrich, Lily W.;
- King, Benjamin L.;
- Nacci, Diane E.;
- Aluru, Neel;
- Karchner, Sibel I.;
- Colbourne, John K.;
- Hahn, Mark E.;
- Shaw, Joseph R.;
- Oleksiak, Marjorie F.;
- Crawford, Douglas L.;
- Warren, Wesley C.;
- Whitehead, Andrew
Publication type:
Article
A Novel Mechanism of Host-Pathogen Interaction through sRNA in Bacterial Outer Membrane Vesicles.
Published in:
PLoS Pathogens, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.ppat.1005672
By:
- Koeppen, Katja;
- Hampton, Thomas H.;
- Jarek, Michael;
- Scharfe, Maren;
- Gerber, Scott A.;
- Mielcarz, Daniel W.;
- Demers, Elora G.;
- Dolben, Emily L.;
- Hammond, John H.;
- Hogan, Deborah A.;
- Stanton, Bruce A.
Publication type:
Article
Community composition shapes microbial-specific phenotypes in a cystic fibrosis polymicrobial model system.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.81604
By:
- Jean-Pierre, Fabrice;
- Hampton, Thomas H.;
- Schultz, Daniel;
- Hogan, Deborah A.;
- Groleau, Marie-Christine;
- Déziel, Eric;
- O'Toole, George A.
Publication type:
Article
Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease.
Published in:
PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0149998
By:
- Hogan, Deborah A.;
- Willger, Sven D.;
- Dolben, Emily L.;
- Hampton, Thomas H.;
- Stanton, Bruce A.;
- Morrison, Hilary G.;
- Sogin, Mitchell L.;
- Czum, Julianna;
- Ashare, Alix
Publication type:
Article
Single-cell RNA-seq Analysis Reveals That Prenatal Arsenic Exposure Results in Long-term, Adverse Effects on Immune Gene Expression in Response to Influenza A Infection.
Published in:
Toxicological Sciences, 2020, v. 176, n. 2, p. 312, doi. 10.1093/toxsci/kfaa080
By:
- Hsu, Kevin S;
- Goodale, Britton C;
- Ely, Kenneth H;
- Hampton, Thomas H;
- Stanton, Bruce A;
- Enelow, Richard I
Publication type:
Article
ScanGEO: parallel mining of high-throughput gene expression data.
Published in:
Bioinformatics, 2017, v. 33, n. 21, p. 3500, doi. 10.1093/bioinformatics/btx452
By:
- Koeppen, Katja;
- Stanton, Bruce A.;
- Hampton, Thomas H.
Publication type:
Article
Lung function and microbiota diversity in cystic fibrosis.
Published in:
Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00810-3
By:
- Cuthbertson, Leah;
- Walker, Alan W.;
- Oliver, Anna E.;
- Rogers, Geraint B.;
- Rivett, Damian W.;
- Hampton, Thomas H.;
- Ashare, Alix;
- Elborn, J. Stuart;
- De Soyza, Anthony;
- Carroll, Mary P.;
- Hoffman, Lucas R.;
- Lanyon, Clare;
- Moskowitz, Samuel M.;
- O'Toole, George A.;
- Parkhill, Julian;
- Planet, Paul J.;
- Teneback, Charlotte C.;
- Tunney, Michael M.;
- Zuckerman, Jonathan B.;
- Bruce, Kenneth D.
Publication type:
Article
Comparative effects of CFTR modulators on phagocytic, metabolic and inflammatory profiles of CF and nonCF macrophages.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-38300-9
By:
- Aridgides, Daniel S.;
- Mellinger, Diane L.;
- Gwilt, Lorraine L.;
- Hampton, Thomas H.;
- Mould, Dallas L.;
- Hogan, Deborah A.;
- Ashare, Alix
Publication type:
Article

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