Works by Hamady, Micah

Results: 12

Short pyrosequencing reads suffice for accurate microbial community analysis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e120, doi. 10.1093/nar/gkm541

By:

Liu, Zongzhi;
Lozupone, Catherine;
Hamady, Micah;
Bushman, Frederic D.;
Knight, Rob

Publication type:

Article

A core gut microbiome in obese and lean twins.

Published in:

2009

By:

Turnbaugh, Peter J.;
Hamady, Micah;
Yatsunenko, Tanya;
Cantarel, Brandi L.;
Duncan, Alexis;
Ley, Ruth E.;
Sogin, Mitchell L.;
Jones, William J.;
Roe, Bruce A.;
Affourtit, Jason P.;
Egholm, Michael;
Henrissat, Bernard;
Heath, Andrew C.;
Knight, Rob;
Gordon, Jeffrey I.

Publication type:

Letter

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 1, p. 17, doi. 10.1038/ismej.2009.97

By:

Hamady, Micah;
Lozupone, Catherine;
Knight, Rob

Publication type:

Article

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 4, p. 442, doi. 10.1038/ismej.2008.127

By:

Jones, Ryan T.;
Robeson, Michael S.;
Lauber, Christian L.;
Hamady, Micah;
Knight, Rob;
Fierer, Noah

Publication type:

Article

CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomes.

Published in:

Bioinformatics, 2009, v. 25, n. 10, p. 1331, doi. 10.1093/bioinformatics/btp141

By:

Micah Hamady;
Stephanie A. Wilson;
Jesse Zaneveld;
Noboru Sueoka;
Rob Knight

Publication type:

Article

Global patterns in the biogeography of bacterial taxa.

Published in:

Environmental Microbiology, 2011, v. 13, n. 1, p. 135, doi. 10.1111/j.1462-2920.2010.02315.x

By:

Nemergut, Diana R.;
Costello, Elizabeth K.;
Hamady, Micah;
Lozupone, Catherine;
Jiang, Lin;
Schmidt, Steven K.;
Fierer, Noah;
Townsend, Alan R.;
Cleveland, Cory C.;
Stanish, Lee;
Knight, Rob

Publication type:

Article

UniFrac -- An online tool for comparing microbial community diversity in a phylogenetic context.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 1, doi. 10.1186/1471-2105-7-371

By:

Lozupone, Catherine;
Hamady, Micah;
Knight, Rob

Publication type:

Article

Fast-Find: A novel computational approach to analyzing combinatorial motifs.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 1, doi. 10.1186/1471-2105-7-1

By:

Hamady, Micah;
Peden, Erin;
Knight, Rob;
Singh, Ravinder

Publication type:

Article

Worlds within worlds: evolution of the vertebrate gut microbiota.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 10, p. 776, doi. 10.1038/nrmicro1978

By:

Ley, Ruth E.;
Lozupone, Catherine A.;
Hamady, Micah;
Knight, Rob;
Gordon, Jeffrey I.

Publication type:

Article

The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis.

Published in:

PLoS Pathogens, 2008, v. 4, n. 2, p. 0001, doi. 10.1371/journal.ppat.0040020

By:

McKenna, Philip;
Hoffmann, Christian;
Minkah, Nana;
Pyone Aye, Pyone;
Lackner, Andrew;
Zongzhi Liu;
Lozupone, Catherine A.;
Hamady, Micah;
Knight, Rob;
Bushman, Frederic D.

Publication type:

Article

The Human Microbiome Project.

Published in:

Nature, 2007, v. 449, n. 7164, p. 804, doi. 10.1038/nature06244

By:

Turnbaugh, Peter J.;
Ley, Ruth E.;
Hamady, Micah;
Fraser-Liggett, Claire M.;
Knight, Rob;
Gordon, Jeffrey I.

Publication type:

Article

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.

Published in:

Nature Methods, 2008, v. 5, n. 3, p. 235, doi. 10.1038/nmeth.1184

By:

Hamady, Micah;
Walker, Jeffrey J.;
Harris, J. Kirk;
Gold, Nicholas J.;
Knight, Rob

Publication type:

Article