Works by Haendel, Melissa A

Results: 94

Dealing with Data: A Case Study on Information and Data Management Literacy.

Published in:

2012

By:

Haendel, Melissa A.;
Vasilevsky, Nicole A.;
Wirz, Jacqueline A.

Publication type:

Case Study

Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation.

Published in:

PLoS Biology, 2009, v. 7, n. 11, p. 1, doi. 10.1371/journal.pbio.1000247

By:

Washington, Nicole L.;
Haendel, Melissa A.;
Mungall, Christopher J.;
Ashburner, Michael;
Westerfield, Monte;
Lewis, Suzanna E.

Publication type:

Article

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery.

Published in:

NPJ Digital Medicine, 2019, v. 2, p. N.PAG, doi. 10.1038/s41746-019-0110-4

By:

Zhang, Xingmin Aaron;
Yates, Amy;
Vasilevsky, Nicole;
Gourdine, J. P.;
Callahan, Tiffany J.;
Carmody, Leigh C.;
Danis, Daniel;
Joachimiak, Marcin P.;
Ravanmehr, Vida;
Pfaff, Emily R.;
Champion, James;
Robasky, Kimberly;
Xu, Hao;
Fecho, Karamarie;
Walton, Nephi A.;
Zhu, Richard L.;
Ramsdill, Justin;
Mungall, Christopher J.;
Köhler, Sebastian;
Haendel, Melissa A.

Publication type:

Article

Associations of County-Level Social Determinants of Health with COVID-19 Related Hospitalization Among People with HIV: A Retrospective Analysis of the U.S. National COVID Cohort Collaborative (N3C).

Published in:

AIDS & Behavior, 2024, v. 28, p. 136, doi. 10.1007/s10461-024-04466-0

By:

Islam, Jessica Y.;
Hurwitz, Eric;
Li, Dongmei;
Camacho-Rivera, Marlene;
Sun, Jing;
Safo, Sandra;
Ross, Jennifer M.;
Wilkins, Kenneth;
Hassan, Shukri;
Hill, Elaine L.;
Nosyk, Bohdan;
Varley, Cara;
Fadul, Nada;
Madlock-Brown, Charisse;
Patel, Rena C.;
Haendel, Melissa A.;
Chute, Christopher G.;
Gersing, Kenneth R.;
Walden, Anita;
Bennett, Tellen D.

Publication type:

Article

Impact of HIV on COVID-19 Outcomes: A Propensity Score Matching Analysis with Varying Age Differences.

Published in:

AIDS & Behavior, 2024, v. 28, p. 124, doi. 10.1007/s10461-023-04088-y

By:

Guo, Siyuan;
Zhang, Jiajia;
Yang, Xueying;
Weissman, Sharon;
Olatosi, Bankole;
Patel, Rena C.;
Li, Xiaoming;
Moffitt, Richard A.;
Chute, Christopher G.;
Haendel, Melissa A.

Publication type:

Article

COVID-19 BIVALENT BOOSTER EFFECTIVENESS IN PEOPLE WITH AND WITHOUT IMMUNE DYSFUNCTION.

Published in:

Topics in Antiviral Medicine, 2023, v. 31, n. 2, p. 88

By:

Jing Sun;
Yifan Zhang;
Anzalone, Alfred J.;
Olex, Amy L.;
Hurwitz, Eric;
Mathew, Jomol;
Safdar, Nasia;
Islam, Jessica Y.;
Mannon, Roslyn;
Vinson, Amanda J.;
Chute, Christopher;
Haendel, Melissa A.;
Patel, Rena;
Kirk, Greg

Publication type:

Article

Thematic series on biomedical ontologies in JBMS: challenges and new directions.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-15

By:

Hoehndorf, Robert;
Haendel, Melissa;
Stevens, Robert;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-12

By:

Van Slyke, Ceri E.;
Bradford, Yvonne M.;
Westerfield, Monte;
Haendel, Melissa A.

Publication type:

Article

Community risks for SARS-CoV-2 infection among fully vaccinated US adults by rurality: A retrospective cohort study from the National COVID Cohort Collaborative.

Published in:

PLoS ONE, 2023, v. 18, n. 1, p. 1, doi. 10.1371/journal.pone.0279968

By:

Anzalone, Alfred Jerrod;
Sun, Jing;
Vinson, Amanda J.;
Beasley, William H.;
Hillegass, William B.;
Murray, Kimberly;
Hendricks, Brian M.;
Haendel, Melissa;
Geary, Carol Reynolds;
Bailey, Kristina L.;
Hanson, Corrine K.;
Miele, Lucio;
Horswell, Ronald;
McMurry, Julie A.;
Porterfield, J. Zachary;
Vest, Michael T.;
Bunnell, H. Timothy;
Harper, Jeremy R.;
Price, Bradley S.;
Santangelo, Susan L.

Publication type:

Article

Coding long COVID: characterizing a new disease through an ICD-10 lens.

Published in:

BMC Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12916-023-02737-6

By:

Pfaff, Emily R.;
Madlock-Brown, Charisse;
Baratta, John M.;
Bhatia, Abhishek;
Davis, Hannah;
Girvin, Andrew;
Hill, Elaine;
Kelly, Elizabeth;
Kostka, Kristin;
Loomba, Johanna;
McMurry, Julie A.;
Wong, Rachel;
Bennett, Tellen D.;
Moffitt, Richard;
Chute, Christopher G.;
Haendel, Melissa

Publication type:

Article

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.

Published in:

Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae104

By:

Caufield, J Harry;
Hegde, Harshad;
Emonet, Vincent;
Harris, Nomi L;
Joachimiak, Marcin P;
Matentzoglu, Nicolas;
Kim, HyeongSik;
Moxon, Sierra;
Reese, Justin T;
Haendel, Melissa A;
Robinson, Peter N;
Mungall, Christopher J

Publication type:

Article

Harnessing Consumer Wearable Digital Biomarkers for Individualized Recognition of Postpartum Depression Using the All of Us Research Program Data Set: Cross-Sectional Study.

Published in:

JMIR mHealth & uHealth, 2024, v. 12, p. 1, doi. 10.2196/54622

By:

Hurwitz, Eric;
Butzin-Dozier, Zachary;
Master, Hiral;
O'Neil, Shawn T;
Walden, Anita;
Holko, Michelle;
Patel, Rena C;
Haendel, Melissa A

Publication type:

Article

Characteristics, Outcomes, and Severity Risk Factors Associated With SARS-CoV-2 Infection Among Children in the US National COVID Cohort Collaborative.

Published in:

JAMA Network Open, 2022, v. 5, n. 2, p. e2143151, doi. 10.1001/jamanetworkopen.2021.43151

By:

Martin, Blake;
DeWitt, Peter E.;
Russell, Seth;
Anand, Adit;
Bradwell, Katie R.;
Bremer, Carolyn;
Gabriel, Davera;
Girvin, Andrew T.;
Hajagos, Janos G.;
McMurry, Julie A.;
Neumann, Andrew J.;
Pfaff, Emily R.;
Walden, Anita;
Wooldridge, Jacob T.;
Yoo, Yun Jae;
Saltz, Joel;
Gersing, Ken R.;
Chute, Christopher G.;
Haendel, Melissa A.;
Moffitt, Richard

Publication type:

Article

Unifying the identification of biomedical entities with the Bioregistry.

Published in:

Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01807-3

By:

Hoyt, Charles Tapley;
Balk, Meghan;
Callahan, Tiffany J.;
Domingo-Fernández, Daniel;
Haendel, Melissa A.;
Hegde, Harshad B.;
Himmelstein, Daniel S.;
Karis, Klas;
Kunze, John;
Lubiana, Tiago;
Matentzoglu, Nicolas;
McMurry, Julie;
Moxon, Sierra;
Mungall, Christopher J.;
Rutz, Adriano;
Unni, Deepak R.;
Willighagen, Egon;
Winston, Donald;
Gyori, Benjamin M.

Publication type:

Article

Risk of new‐onset psychiatric sequelae of COVID‐19 in the early and late post‐acute phase.

Published in:

World Psychiatry, 2022, v. 21, n. 2, p. 319, doi. 10.1002/wps.20992

By:

Coleman, Ben;
Casiraghi, Elena;
Blau, Hannah;
Chan, Lauren;
Haendel, Melissa A.;
Laraway, Bryan;
Callahan, Tiffany J.;
Deer, Rachel R.;
Wilkins, Kenneth J.;
Reese, Justin;
Robinson, Peter N.

Publication type:

Article

The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D768

By:

Sprague, Judy;
Bayraktaroglu, Leyla;
Bradford, Yvonne;
Conlin, Tom;
Dunn, Nathan;
Fashena, David;
Frazer, Ken;
Haendel, Melissa;
Howe, Douglas G.;
Knight, Jonathan;
Mani, Prita;
Moxon, Sierra A.T.;
Pich, Christian;
Ramachandran, Sridhar;
Schaper, Kevin;
Segerdell, Erik;
Shao, Xiang;
Singer, Amy;
Song, Peiran;
Sprunger, Brock

Publication type:

Article

The Zebrafish Information Network: the zebrafish model organism database.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d581, doi. 10.1093/nar/gkj086

By:

Sprague, Judy;
Bayraktaroglu, Leyla;
Clements, Dave;
Conlin, Tom;
Fashena, David;
Frazer, Ken;
Haendel, Melissa;
Howe, Douglas G.;
Mani, Prita;
Ramachandran, Sridhar;
Schaper, Kevin;
Segerdell, Erik;
Song, Peiran;
Sprunger, Brock;
Taylor, Sierra;
Van Slyke, Ceri E.;
Westerfield, Monte

Publication type:

Article

Sharing biological data: why, when, and how.

Published in:

FEBS Letters, 2021, v. 595, n. 7, p. 847, doi. 10.1002/1873-3468.14067

By:

Wilson, Samantha L.;
Way, Gregory P.;
Bittremieux, Wout;
Armache, Jean‐Paul;
Haendel, Melissa A.;
Hoffman, Michael M.

Publication type:

Article

Association Between Glucagon-Like Peptide 1 Receptor Agonist and Sodium-Glucose Cotransporter 2 Inhibitor Use and COVID-19 Outcomes.

Published in:

2021

By:

Kahkoska, Anna R.;
Abrahamsen, Trine Julie;
Alexander, G. Caleb;
Bennett, Tellen D.;
Chute, Christopher G.;
Haendel, Melissa A.;
Klein, Klara R.;
Mehta, Hemalkumar;
Miller, Joshua D.;
Moffitt, Richard A.;
Stürmer, Til;
Kvist, Kajsa;
Buse, John B.;
Duong, Tim Q.;
N3C Consortium

Publication type:

journal article

NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study.

Published in:

Virology Journal, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12985-022-01813-2

By:

Reese, Justin T.;
Coleman, Ben;
Chan, Lauren;
Blau, Hannah;
Callahan, Tiffany J.;
Cappelletti, Luca;
Fontana, Tommaso;
Bradwell, Katie R.;
Harris, Nomi L.;
Casiraghi, Elena;
Valentini, Giorgio;
Karlebach, Guy;
Deer, Rachel;
McMurry, Julie A.;
Haendel, Melissa A.;
Chute, Christopher G.;
Pfaff, Emily;
Moffitt, Richard;
Spratt, Heidi;
Singh, Jasvinder A.

Publication type:

Article

OBO-Edit an ontology editor for biologists.

Published in:

Bioinformatics, 2007, v. 23, n. 16, p. 2198

By:

John Day-Richter;
Midori A. Harris;
Melissa Haendel;
The Gene Ontology OBO-Edit Working Group;
Suzanna Lewis

Publication type:

Article

Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs.

Published in:

NPJ Digital Medicine, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s41746-024-01286-3

By:

O'Neil, Shawn T.;
Madlock-Brown, Charisse;
Wilkins, Kenneth J.;
McGrath, Brenda M.;
Davis, Hannah E.;
Assaf, Gina S.;
Wei, Hannah;
Zareie, Parya;
French, Evan T.;
Loomba, Johanna;
McMurry, Julie A.;
Zhou, Andrea;
Chute, Christopher G.;
Moffitt, Richard A.;
Pfaff, Emily R.;
Yoo, Yun Jae;
Leese, Peter;
Chew, Robert F.;
Lieberman, Michael;
Haendel, Melissa A.

Publication type:

Article

The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.

Published in:

Genes, 2019, v. 10, n. 12, p. 960, doi. 10.3390/genes10120960

By:

Hotchkiss, Jade;
Manyisa, Noluthando;
Mawuli Adadey, Samuel;
Oluwole, Oluwafemi Gabriel;
Wonkam, Edmond;
Mnika, Khuthala;
Yalcouye, Abdoulaye;
Nembaware, Victoria;
Haendel, Melissa;
Vasilevsky, Nicole;
Mulder, Nicola J.;
Jupp, Simon;
Wonkam, Ambroise;
K. Mazandu, Gaston

Publication type:

Article

The Ontology for Biomedical Investigations.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0154556

By:

Bandrowski, Anita;
Brinkman, Ryan;
Brochhausen, Mathias;
Brush, Matthew H.;
Bug, Bill;
Chibucos, Marcus C.;
Clancy, Kevin;
Courtot, Mélanie;
Derom, Dirk;
Dumontier, Michel;
Fan, Liju;
Fostel, Jennifer;
Fragoso, Gilberto;
Gibson, Frank;
Gonzalez-Beltran, Alejandra;
Haendel, Melissa A.;
He, Yongqun;
Heiskanen, Mervi;
Hernandez-Boussard, Tina;
Jensen, Mark

Publication type:

Article

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149102

By:

Druzinsky, Robert E.;
Balhoff, James P.;
Crompton, Alfred W.;
Done, James;
German, Rebecca Z.;
Haendel, Melissa A.;
Herrel, Anthony;
Herring, Susan W.;
Lapp, Hilmar;
Mabee, Paula M.;
Muller, Hans-Michael;
Mungall, Christopher J.;
Sternberg, Paul W.;
Van Auken, Kimberly;
Vinyard, Christopher J.;
Williams, Susan H.;
Wall, Christine E.

Publication type:

Article

GA4GH Phenopackets: A Practical Introduction.

Published in:

Advanced Genetics, 2023, v. 4, n. 1, p. 1, doi. 10.1002/ggn2.202200016

By:

Ladewig, Markus S.;
Jacobsen, Julius O. B.;
Wagner, Alex H.;
Danis, Daniel;
El Kassaby, Baha;
Gargano, Michael;
Groza, Tudor;
Baudis, Michael;
Steinhaus, Robin;
Seelow, Dominik;
Bechrakis, Nikolaos E.;
Mungall, Christopher J.;
Schofield, Paul N.;
Elemento, Olivier;
Smith, Lindsay;
McMurry, Julie A.;
Munoz‐Torres, Monica;
Haendel, Melissa A.;
Robinson, Peter N.

Publication type:

Article

Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38388-7

By:

Brannock, M. Daniel;
Chew, Robert F.;
Preiss, Alexander J.;
Hadley, Emily C.;
Redfield, Signe;
McMurry, Julie A.;
Leese, Peter J.;
Girvin, Andrew T.;
Crosskey, Miles;
Zhou, Andrea G.;
Moffitt, Richard A.;
Funk, Michele Jonsson;
Pfaff, Emily R.;
Haendel, Melissa A.;
Chute, Christopher G.;
N3C;
Stürmer, Til;
Loomba, Johanna J.;
Koraishy, Farrukh M.;
RECOVER Consortia

Publication type:

Article

Ensuring a safe(r) harbor: Excising personally identifiable information from structured electronic health record data.

Published in:

Journal of Clinical & Translational Science, 2022, v. 6, n. 1, p. 1, doi. 10.1017/cts.2021.880

By:

Pfaff, Emily R.;
Haendel, Melissa A.;
Kostka, Kristin;
Lee, Adam;
Niehaus, Emily;
Palchuk, Matvey B.;
Walters, Kellie;
Chute, Christopher G.

Publication type:

Article

Effectiveness of mRNA Booster Vaccine Against Coronavirus Disease 2019 Infection and Severe Outcomes Among Persons With and Without Immune Dysfunction: A Retrospective Cohort Study of National Electronic Medical Record Data in the United States.

Published in:

Open Forum Infectious Diseases, 2024, v. 11, n. 2, p. 1, doi. 10.1093/ofid/ofae019

By:

Sun, Jing;
Zheng, Qulu;
Anzalone, Alfred J;
Abraham, Alison G;
Olex, Amy L;
Zhang, Yifan;
Mathew, Jomol;
Safdar, Nasia;
Haendel, Melissa A;
Segev, Dorry;
Islam, Jessica Y;
Singh, Jasvinder A;
Mannon, Roslyn B;
Chute, Christopher G;
Patel, Rena C;
Kirk, Gregory D

Publication type:

Article

De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository.

Published in:

Journal of the American Medical Informatics Association, 2023, v. 30, n. 7, p. 1305, doi. 10.1093/jamia/ocad077

By:

Pfaff, Emily R;
Girvin, Andrew T;
Crosskey, Miles;
Gangireddy, Srushti;
Master, Hiral;
Wei, Wei-Qi;
Kerchberger, V Eric;
Weiner, Mark;
Harris, Paul A;
Basford, Melissa;
Lunt, Chris;
Chute, Christopher G;
Moffitt, Richard A;
Haendel, Melissa;
Consortia, N3C and RECOVER

Publication type:

Article

Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs.

Published in:

Journal of the American Medical Informatics Association, 2023, v. 30, n. 6, p. 1125, doi. 10.1093/jamia/ocad057

By:

Leese, Peter;
Anand, Adit;
Girvin, Andrew;
Manna, Amin;
Patel, Saaya;
Yoo, Yun Jae;
Wong, Rachel;
Haendel, Melissa;
Chute, Christopher G;
Bennett, Tellen;
Hajagos, Janos;
Pfaff, Emily;
Moffitt, Richard

Publication type:

Article

Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.

Published in:

Journal of the American Medical Informatics Association, 2022, v. 29, n. 7, p. 1172, doi. 10.1093/jamia/ocac054

By:

Bradwell, Katie R;
Wooldridge, Jacob T;
Amor, Benjamin;
Bennett, Tellen D;
Anand, Adit;
Bremer, Carolyn;
Yoo, Yun Jae;
Qian, Zhenglong;
Johnson, Steven G;
Pfaff, Emily R;
Girvin, Andrew T;
Manna, Amin;
Niehaus, Emily A;
Hong, Stephanie S;
Zhang, Xiaohan Tanner;
Zhu, Richard L;
Bissell, Mark;
Qureshi, Nabeel;
Saltz, Joel;
Haendel, Melissa A

Publication type:

Article

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.

Published in:

2021

By:

Haendel, Melissa A;
Chute, Christopher G;
Bennett, Tellen D;
Eichmann, David A;
Guinney, Justin;
Kibbe, Warren A;
Payne, Philip R O;
Pfaff, Emily R;
Robinson, Peter N;
Saltz, Joel H;
Spratt, Heidi;
Suver, Christine;
Wilbanks, John;
Wilcox, Adam B;
Williams, Andrew E;
Wu, Chunlei;
Blacketer, Clair;
Bradford, Robert L;
Cimino, James J;
Clark, Marshall

Publication type:

journal article

Underrepresentation of Phenotypic Variability of 16p13.11 Microduplication Syndrome Assessed With an Online Self-Phenotyping Tool (Phenotypr): Cohort Study.

Published in:

2021

By:

Li, Jianqiao;
Hojlo, Margaret A;
Chennuri, Sampath;
Gujral, Nitin;
Paterson, Heather L;
Shefchek, Kent A;
Genetti, Casie A;
Cohn, Emily L;
Sewalk, Kara C;
Garvey, Emily A;
Buttermore, Elizabeth D;
Anderson, Nickesha C;
Beggs, Alan H;
Agrawal, Pankaj B;
Brownstein, John S;
Haendel, Melissa A;
Holm, Ingrid A;
Gonzalez-Heydrich, Joseph;
Brownstein, Catherine A

Publication type:

journal article

Data-driven method to enhance craniofacial and oral phenotype vocabularies.

Published in:

Journal of the American Dental Association (JADA), 2019, v. 150, n. 11, p. 933, doi. 10.1016/j.adaj.2019.05.029

By:

Mishra, Rashmi;
Burke, Andrea;
Gitman, Bonnie;
Verma, Payal;
Engelstad, Mark;
Haendel, Melissa A.;
Alevizos, Ilias;
Gahl, William A.;
Collins, Michael T.;
Lee, Janice S.;
Sincan, Murat

Publication type:

Article

Association of Premorbid GLP-1RA and SGLT-2i Prescription Alone and in Combination with COVID-19 Severity.

Published in:

Diabetes Therapy, 2024, v. 15, n. 5, p. 1169, doi. 10.1007/s13300-024-01562-1

By:

Klein, Klara R.;
Abrahamsen, Trine J.;
Kahkoska, Anna R.;
Alexander, G. Caleb;
Chute, Christopher G.;
Haendel, Melissa;
Hong, Stephanie S.;
Mehta, Hemalkumar;
Moffitt, Richard;
Stürmer, Til;
Kvist, Kajsa;
Buse, John B.

Publication type:

Article

The Resource Identification Initiative: A cultural shift in publishing.

Published in:

Journal of Comparative Neurology, 2016, v. 524, n. 1, p. 8, doi. 10.1002/cne.23913

By:

Bandrowski, Anita;
Brush, Matthew;
Grethe, Jeffery S.;
Haendel, Melissa A;
Kennedy, David N.;
Hill, Sean;
Hof, Patrick R.;
Martone, Maryann E.;
Pols, Maaike;
Tan, Serena C.;
Washington, Nicole;
Zudilova‐Seinstra, Elena;
Vasilevsky, Nicole

Publication type:

Article

Leukaemia inhibitory factor (LIF) is functionally linked to axotrophin and both LIF and axotrophin are linked to regulatory immune tolerance

Published in:

FEBS Letters, 2005, v. 579, n. 3, p. 609, doi. 10.1016/j.febslet.2004.12.027

By:

Metcalfe, Su M.;
Muthukumarana, Poorni A. De S.;
Thompson, H. Lorraine;
Haendel, Melissa A.;
Lyons, Gary E.

Publication type:

Article

Use of animal models for exome prioritization of rare disease genes

Published in:

Orphanet Journal of Rare Diseases, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1750-1172-9-S1-O19

By:

Smedley, Damian;
Kohler, Sebastian;
Bone, William;
Oellrich, Anika;
Jacobsen, Jules;
Genetics Project, Sanger Mouse;
Kai Wang;
Mungall, Chris;
Washington, Nicole;
Bauer, Sebastian;
Seelow, Dominic;
Krawitz, Peter;
Boerkel, Cornelius;
Gilissen, Christian;
Haendel, Melissa;
Lewis, Suzanna E;
Robinson, Peter N

Publication type:

Article

An evaluation of GPT models for phenotype concept recognition.

Published in:

BMC Medical Informatics & Decision Making, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12911-024-02439-w

By:

Groza, Tudor;
Caufield, Harry;
Gration, Dylan;
Baynam, Gareth;
Haendel, Melissa A.;
Robinson, Peter N.;
Mungall, Christopher J.;
Reese, Justin T.

Publication type:

Article

Transforming the study of organisms: Phenomic data models and knowledge bases.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008376

By:

Thessen, Anne E.;
Walls, Ramona L.;
Vogt, Lars;
Singer, Jessica;
Warren, Robert;
Buttigieg, Pier Luigi;
Balhoff, James P.;
Mungall, Christopher J.;
McGuinness, Deborah L.;
Stucky, Brian J.;
Yoder, Matthew J.;
Haendel, Melissa A.

Publication type:

Article

Effect of nirmatrelvir/ritonavir (Paxlovid) on hospitalization among adults with COVID-19: An electronic health record-based target trial emulation from N3C.

Published in:

PLoS Medicine, 2025, v. 22, n. 1, p. 1, doi. 10.1371/journal.pmed.1004493

By:

Bhatia, Abhishek;
Preiss, Alexander J.;
Xiao, Xuya;
Brannock, M. Daniel;
Alexander, G. Caleb;
Chew, Robert F.;
Davis, Hannah;
Fitzgerald, Megan;
Hill, Elaine;
Kelly, Elizabeth P.;
Mehta, Hemalkumar B.;
Madlock-Brown, Charisse;
Wilkins, Kenneth J.;
Chute, Christopher G.;
Haendel, Melissa;
Moffitt, Richard;
Pfaff, Emily R.

Publication type:

Article

From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences.

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PLoS Biology, 2021, v. 19, n. 3, p. 1, doi. 10.1371/journal.pbio.3001129

By:

Thessen, Anne E.;
Bogdan, Paul;
Patterson, David J.;
Casey, Theresa M.;
Hinojo-Hinojo, César;
de Lange, Orlando;
Haendel, Melissa A.

Publication type:

Article

Developmental Toxicity of the Dithiocarbamate Pesticide Sodium Metam in Zebrafish.

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Toxicological Sciences, 2004, v. 81, n. 2, p. 390, doi. 10.1093/toxsci/kfh202

By:

Haendel, Melissa A.;
Tilton, Fred;
Bailey, George S.;
Tanguay, Robert L.

Publication type:

Article

Ankle Fracture and Length of Stay in US Adult Population Using Data From the National COVID Cohort Collaborative.

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Foot & Ankle Orthopaedics, 2022, v. 7, n. 1, p. 1, doi. 10.1177/24730114221077282

By:

Pitts, Charles C.;
Levitt, Eli B.;
Patch, David A.;
Mihas, Alexander K.;
Terrero, Alfredo;
Haendel, Melissa A.;
Chute, Christopher G.;
Ponce, Brent A.;
Theiss, Steven M.;
Spitler, Clay A.;
Johnson, Michael D.

Publication type:

Article

The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.

Published in:

Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00283-x

By:

Chan, Lauren E.;
Thessen, Anne E.;
Duncan, William D.;
Matentzoglu, Nicolas;
Schmitt, Charles;
Grondin, Cynthia J.;
Vasilevsky, Nicole;
McMurry, Julie A.;
Robinson, Peter N.;
Mungall, Christopher J.;
Haendel, Melissa A.

Publication type:

Article

Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology.

Published in:

Journal of Biomedical Semantics, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13326-020-00222-0

By:

Duncan, William D.;
Thyvalikakath, Thankam;
Haendel, Melissa;
Torniai, Carlo;
Hernandez, Pedro;
Song, Mei;
Acharya, Amit;
Caplan, Daniel J.;
Schleyer, Titus;
Ruttenberg, Alan

Publication type:

Article

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7

By:

Diehl, Alexander D.;
Meehan, Terrence F.;
Bradford, Yvonne M.;
Brush, Matthew H.;
Dahdul, Wasila M.;
Dougall, David S.;
Yongqun He;
Osumi-Sutherland, David;
Ruttenberg, Alan;
Sarntivijai, Sirarat;
Van Slyke, Ceri E.;
Vasilevsky, Nicole A.;
Haendel, Melissa A.;
Blake, Judith A.;
Mungall, Christopher J.

Publication type:

Article

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21

By:

Haendel, Melissa A.;
Balhoff, James P.;
Bastian, Frederic B.;
Blackburn, David C.;
Blake, Judith A.;
Bradford, Yvonne;
Comte, Aurelie;
Dahdul, Wasila M.;
Dececchi, Thomas A.;
Druzinsky, Robert E.;
Hayamizu, Terry F.;
Ibrahim, Nizar;
Lewis, Suzanna E.;
Mabee, Paula M.;
Niknejad, Anne;
Robinson-Rechavi, Marc;
Sereno, Paul C.;
Mungall, Christopher J.

Publication type:

Article

What is an anatomy ontology?

Published in:

Anatomical Record: Advances in Integrative Anatomy & Evolutionary Biology, 2013, v. 296, n. 12, p. 1797, doi. 10.1002/ar.22805

By:

Druzinsky, Robert;
Mungall, Christopher;
Haendel, Melissa;
Lapp, Hilmar;
Mabee, Paula

Publication type:

Article