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The Global academic research organization network: Data sharing to cure diseases and enable learning health systems.
Published in:
Learning Health Systems, 2019, v. 3, n. 1, p. N.PAG, doi. 10.1002/lrh2.10073
By:
- Fukushima, Masanori;
- Austin, Christopher;
- Sato, Norihiro;
- Maruyama, Tatsuya;
- Navarro, Eileen;
- Rocca, Mitra;
- Demotes, Jacques;
- Haendel, Melissa;
- Volchenboum, Samuel L.;
- Cowperthwaite, Matthew;
- Silverstein, Jonathan C.;
- Webb, Chris;
- Sim, Ida;
- Chase, Marianne;
- Speakman, John;
- Augustine, Erika;
- Ford, Daniel E.;
- Kush, Rebecca
Publication type:
Article
Unifying the identification of biomedical entities with the Bioregistry.
Published in:
Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01807-3
By:
- Hoyt, Charles Tapley;
- Balk, Meghan;
- Callahan, Tiffany J.;
- Domingo-Fernández, Daniel;
- Haendel, Melissa A.;
- Hegde, Harshad B.;
- Himmelstein, Daniel S.;
- Karis, Klas;
- Kunze, John;
- Lubiana, Tiago;
- Matentzoglu, Nicolas;
- McMurry, Julie;
- Moxon, Sierra;
- Mungall, Christopher J.;
- Rutz, Adriano;
- Unni, Deepak R.;
- Willighagen, Egon;
- Winston, Donald;
- Gyori, Benjamin M.
Publication type:
Article
Effectiveness of mRNA Booster Vaccine Against Coronavirus Disease 2019 Infection and Severe Outcomes Among Persons With and Without Immune Dysfunction: A Retrospective Cohort Study of National Electronic Medical Record Data in the United States.
Published in:
Open Forum Infectious Diseases, 2024, v. 11, n. 2, p. 1, doi. 10.1093/ofid/ofae019
By:
- Sun, Jing;
- Zheng, Qulu;
- Anzalone, Alfred J;
- Abraham, Alison G;
- Olex, Amy L;
- Zhang, Yifan;
- Mathew, Jomol;
- Safdar, Nasia;
- Haendel, Melissa A;
- Segev, Dorry;
- Islam, Jessica Y;
- Singh, Jasvinder A;
- Mannon, Roslyn B;
- Chute, Christopher G;
- Patel, Rena C;
- Kirk, Gregory D
Publication type:
Article
Association of post-COVID phenotypic manifestations with new-onset psychiatric disease.
Published in:
Translational Psychiatry, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41398-024-02967-z
By:
- Coleman, Ben;
- Casiraghi, Elena;
- Callahan, Tiffany J.;
- Blau, Hannah;
- Chan, Lauren E.;
- Laraway, Bryan;
- Clark, Kevin B.;
- Re'em, Yochai;
- Gersing, Ken R.;
- Wilkins, Kenneth J.;
- Harris, Nomi L.;
- Valentini, Giorgio;
- Haendel, Melissa A.;
- Reese, Justin T.;
- Robinson, Peter N.
Publication type:
Article
Use of animal models for exome prioritization of rare disease genes
Published in:
Orphanet Journal of Rare Diseases, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1750-1172-9-S1-O19
By:
- Smedley, Damian;
- Kohler, Sebastian;
- Bone, William;
- Oellrich, Anika;
- Jacobsen, Jules;
- Genetics Project, Sanger Mouse;
- Kai Wang;
- Mungall, Chris;
- Washington, Nicole;
- Bauer, Sebastian;
- Seelow, Dominic;
- Krawitz, Peter;
- Boerkel, Cornelius;
- Gilissen, Christian;
- Haendel, Melissa;
- Lewis, Suzanna E;
- Robinson, Peter N
Publication type:
Article
Who is pregnant? Defining real-world data-based pregnancy episodes in the National COVID Cohort Collaborative (N3C).
Published in:
JAMIA Open, 2023, v. 6, n. 3, p. 1, doi. 10.1093/jamiaopen/ooad067
By:
- Jones, Sara E.;
- Bradwell, Katie R.;
- Chan, Lauren E.;
- McMurry, Julie A.;
- Olson-Chen, Courtney;
- Tarleton, Jessica;
- Wilkins, Kenneth J.;
- Ly, Victoria;
- Ljazouli, Saad;
- Qiuyuan Qin;
- Faherty, Emily Groene;
- Yan Kwan Lau;
- Xie, Catherine;
- Yu-Han Kao;
- Liebman, Michael N.;
- Mariona, Federico;
- Challa, Anup P.;
- Li Li;
- Ratcliffe, Sarah J.;
- Haendel, Melissa A.
Publication type:
Article
Associations of County-Level Social Determinants of Health with COVID-19 Related Hospitalization Among People with HIV: A Retrospective Analysis of the U.S. National COVID Cohort Collaborative (N3C).
Published in:
AIDS & Behavior, 2024, v. 28, p. 136, doi. 10.1007/s10461-024-04466-0
By:
- Islam, Jessica Y.;
- Hurwitz, Eric;
- Li, Dongmei;
- Camacho-Rivera, Marlene;
- Sun, Jing;
- Safo, Sandra;
- Ross, Jennifer M.;
- Wilkins, Kenneth;
- Hassan, Shukri;
- Hill, Elaine L.;
- Nosyk, Bohdan;
- Varley, Cara;
- Fadul, Nada;
- Madlock-Brown, Charisse;
- Patel, Rena C.;
- Haendel, Melissa A.;
- Chute, Christopher G.;
- Gersing, Kenneth R.;
- Walden, Anita;
- Bennett, Tellen D.
Publication type:
Article
Impact of HIV on COVID-19 Outcomes: A Propensity Score Matching Analysis with Varying Age Differences.
Published in:
AIDS & Behavior, 2024, v. 28, p. 124, doi. 10.1007/s10461-023-04088-y
By:
- Guo, Siyuan;
- Zhang, Jiajia;
- Yang, Xueying;
- Weissman, Sharon;
- Olatosi, Bankole;
- Patel, Rena C.;
- Li, Xiaoming;
- Moffitt, Richard A.;
- Chute, Christopher G.;
- Haendel, Melissa A.
Publication type:
Article
The Effect of the COVID-19 Pandemic on Pulmonary Diagnostic Procedures.
Published in:
Annals of the American Thoracic Society, 2022, v. 19, n. 4, p. 695, doi. 10.1513/annalsats.202108-943rl
By:
- Call, Justin T.;
- Lee, Augustine S.;
- Haendel, Melissa A.;
- Chute, Christopher G.;
- Helgeson, Scott A.
Publication type:
Article
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes.
Published in:
Nucleic Acids Research, 2008, v. 36, p. D768
By:
- Sprague, Judy;
- Bayraktaroglu, Leyla;
- Bradford, Yvonne;
- Conlin, Tom;
- Dunn, Nathan;
- Fashena, David;
- Frazer, Ken;
- Haendel, Melissa;
- Howe, Douglas G.;
- Knight, Jonathan;
- Mani, Prita;
- Moxon, Sierra A.T.;
- Pich, Christian;
- Ramachandran, Sridhar;
- Schaper, Kevin;
- Segerdell, Erik;
- Shao, Xiang;
- Singer, Amy;
- Song, Peiran;
- Sprunger, Brock
Publication type:
Article
Phenopacket-tools: Building and validating GA4GH Phenopackets.
Published in:
PLoS ONE, 2023, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0285433
By:
- Danis, Daniel;
- Jacobsen, Julius O. B.;
- Wagner, Alex H.;
- Groza, Tudor;
- Beckwith, Martha A.;
- Rekerle, Lauren;
- Carmody, Leigh C.;
- Reese, Justin;
- Hegde, Harshad;
- Ladewig, Markus S.;
- Seitz, Berthold;
- Munoz-Torres, Monica;
- Harris, Nomi L.;
- Rambla, Jordi;
- Baudis, Michael;
- Mungall, Christopher J.;
- Haendel, Melissa A.;
- Robinson, Peter N.
Publication type:
Article
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.
Published in:
Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae104
By:
- Caufield, J Harry;
- Hegde, Harshad;
- Emonet, Vincent;
- Harris, Nomi L;
- Joachimiak, Marcin P;
- Matentzoglu, Nicolas;
- Kim, HyeongSik;
- Moxon, Sierra;
- Reese, Justin T;
- Haendel, Melissa A;
- Robinson, Peter N;
- Mungall, Christopher J
Publication type:
Article
Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs.
Published in:
NPJ Digital Medicine, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s41746-024-01286-3
By:
- O'Neil, Shawn T.;
- Madlock-Brown, Charisse;
- Wilkins, Kenneth J.;
- McGrath, Brenda M.;
- Davis, Hannah E.;
- Assaf, Gina S.;
- Wei, Hannah;
- Zareie, Parya;
- French, Evan T.;
- Loomba, Johanna;
- McMurry, Julie A.;
- Zhou, Andrea;
- Chute, Christopher G.;
- Moffitt, Richard A.;
- Pfaff, Emily R.;
- Yoo, Yun Jae;
- Leese, Peter;
- Chew, Robert F.;
- Lieberman, Michael;
- Haendel, Melissa A.
Publication type:
Article
The Resource Identification Initiative: a cultural shift in publishing.
Published in:
2016
By:
- Bandrowski, Anita;
- Brush, Matthew;
- Grethe, Jeffery S.;
- Haendel, Melissa A.;
- Kennedy, David N.;
- Hill, Sean;
- Hof, Patrick R.;
- Martone, Maryann E.;
- Pols, Maaike;
- Tan, Serena C.;
- Washington, Nicole;
- Zudilova‐Seinstra, Elena;
- Vasilevsky, Nicole
Publication type:
Editorial
Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38388-7
By:
- Brannock, M. Daniel;
- Chew, Robert F.;
- Preiss, Alexander J.;
- Hadley, Emily C.;
- Redfield, Signe;
- McMurry, Julie A.;
- Leese, Peter J.;
- Girvin, Andrew T.;
- Crosskey, Miles;
- Zhou, Andrea G.;
- Moffitt, Richard A.;
- Funk, Michele Jonsson;
- Pfaff, Emily R.;
- Haendel, Melissa A.;
- Chute, Christopher G.;
- N3C;
- Stürmer, Til;
- Loomba, Johanna J.;
- Koraishy, Farrukh M.;
- RECOVER Consortia
Publication type:
Article
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.
Published in:
Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00283-x
By:
- Chan, Lauren E.;
- Thessen, Anne E.;
- Duncan, William D.;
- Matentzoglu, Nicolas;
- Schmitt, Charles;
- Grondin, Cynthia J.;
- Vasilevsky, Nicole;
- McMurry, Julie A.;
- Robinson, Peter N.;
- Mungall, Christopher J.;
- Haendel, Melissa A.
Publication type:
Article
Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology.
Published in:
Journal of Biomedical Semantics, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13326-020-00222-0
By:
- Duncan, William D.;
- Thyvalikakath, Thankam;
- Haendel, Melissa;
- Torniai, Carlo;
- Hernandez, Pedro;
- Song, Mei;
- Acharya, Amit;
- Caplan, Daniel J.;
- Schleyer, Titus;
- Ruttenberg, Alan
Publication type:
Article
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
By:
- Diehl, Alexander D.;
- Meehan, Terrence F.;
- Bradford, Yvonne M.;
- Brush, Matthew H.;
- Dahdul, Wasila M.;
- Dougall, David S.;
- Yongqun He;
- Osumi-Sutherland, David;
- Ruttenberg, Alan;
- Sarntivijai, Sirarat;
- Van Slyke, Ceri E.;
- Vasilevsky, Nicole A.;
- Haendel, Melissa A.;
- Blake, Judith A.;
- Mungall, Christopher J.
Publication type:
Article
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.
Published in:
Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-12
By:
- Van Slyke, Ceri E.;
- Bradford, Yvonne M.;
- Westerfield, Monte;
- Haendel, Melissa A.
Publication type:
Article
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
Published in:
Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21
By:
- Haendel, Melissa A.;
- Balhoff, James P.;
- Bastian, Frederic B.;
- Blackburn, David C.;
- Blake, Judith A.;
- Bradford, Yvonne;
- Comte, Aurelie;
- Dahdul, Wasila M.;
- Dececchi, Thomas A.;
- Druzinsky, Robert E.;
- Hayamizu, Terry F.;
- Ibrahim, Nizar;
- Lewis, Suzanna E.;
- Mabee, Paula M.;
- Niknejad, Anne;
- Robinson-Rechavi, Marc;
- Sereno, Paul C.;
- Mungall, Christopher J.
Publication type:
Article
Thematic series on biomedical ontologies in JBMS: challenges and new directions.
Published in:
Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-15
By:
- Hoehndorf, Robert;
- Haendel, Melissa;
- Stevens, Robert;
- Rebholz-Schuhmann, Dietrich
Publication type:
Article
A Unified Anatomy Ontology of the Vertebrate Skeletal System.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070
By:
- Dahdul, Wasila M.;
- Balhoff, James P.;
- Blackburn, David C.;
- Diehl, Alexander D.;
- Haendel, Melissa A.;
- Hall, Brian K.;
- Lapp, Hilmar;
- Lundberg, John G.;
- Mungall, Christopher J.;
- Ringwald, Martin;
- Segerdell, Erik;
- Van Slyke, Ceri E.;
- Vickaryous, Matthew K.;
- Westerfield, Monte;
- Mabee, Paula M.
Publication type:
Article
NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study.
Published in:
Virology Journal, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12985-022-01813-2
By:
- Reese, Justin T.;
- Coleman, Ben;
- Chan, Lauren;
- Blau, Hannah;
- Callahan, Tiffany J.;
- Cappelletti, Luca;
- Fontana, Tommaso;
- Bradwell, Katie R.;
- Harris, Nomi L.;
- Casiraghi, Elena;
- Valentini, Giorgio;
- Karlebach, Guy;
- Deer, Rachel;
- McMurry, Julie A.;
- Haendel, Melissa A.;
- Chute, Christopher G.;
- Pfaff, Emily;
- Moffitt, Richard;
- Spratt, Heidi;
- Singh, Jasvinder A.
Publication type:
Article
A phenome-wide association study of 26 mendelian genes reveals phenotypic expressivity of common and rare variants within the general population.
Published in:
PLoS Genetics, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pgen.1008802
By:
- Tcheandjieu, Catherine;
- Aguirre, Matthew;
- Gustafsson, Stefan;
- Saha, Priyanka;
- Potiny, Praneetha;
- Haendel, Melissa;
- Ingelsson, Erik;
- Rivas, Manuel A.;
- Priest, James R.
Publication type:
Article
Characteristics, Outcomes, and Severity Risk Factors Associated With SARS-CoV-2 Infection Among Children in the US National COVID Cohort Collaborative.
Published in:
JAMA Network Open, 2022, v. 5, n. 2, p. e2143151, doi. 10.1001/jamanetworkopen.2021.43151
By:
- Martin, Blake;
- DeWitt, Peter E.;
- Russell, Seth;
- Anand, Adit;
- Bradwell, Katie R.;
- Bremer, Carolyn;
- Gabriel, Davera;
- Girvin, Andrew T.;
- Hajagos, Janos G.;
- McMurry, Julie A.;
- Neumann, Andrew J.;
- Pfaff, Emily R.;
- Walden, Anita;
- Wooldridge, Jacob T.;
- Yoo, Yun Jae;
- Saltz, Joel;
- Gersing, Ken R.;
- Chute, Christopher G.;
- Haendel, Melissa A.;
- Moffitt, Richard
Publication type:
Article
Ensuring a safe(r) harbor: Excising personally identifiable information from structured electronic health record data.
Published in:
Journal of Clinical & Translational Science, 2022, v. 6, n. 1, p. 1, doi. 10.1017/cts.2021.880
By:
- Pfaff, Emily R.;
- Haendel, Melissa A.;
- Kostka, Kristin;
- Lee, Adam;
- Niehaus, Emily;
- Palchuk, Matvey B.;
- Walters, Kellie;
- Chute, Christopher G.
Publication type:
Article
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Published in:
Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac087
By:
- Matentzoglu, Nicolas;
- Goutte-Gattat, Damien;
- Tan, Shawn Zheng Kai;
- Balhoff, James P;
- Carbon, Seth;
- Caron, Anita R;
- Duncan, William D;
- Flack, Joe E;
- Haendel, Melissa;
- Harris, Nomi L;
- Hogan, William R;
- Hoyt, Charles Tapley;
- Jackson, Rebecca C;
- Kim, HyeongSik;
- Kir, Huseyin;
- Larralde, Martin;
- McMurry, Julie A;
- Overton, James A;
- Peters, Bjoern;
- Pilgrim, Clare
Publication type:
Article
Simple Standard for Sharing Ontological Mappings (SSSOM).
Published in:
Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac035
By:
- Matentzoglu, Nicolas;
- Balhoff, James P;
- Bello, Susan M;
- Bizon, Chris;
- Brush, Matthew;
- Callahan, Tiffany J;
- Chute, Christopher G;
- Duncan, William D;
- Evelo, Chris T;
- Gabriel, Davera;
- Graybeal, John;
- Gray, Alasdair;
- Gyori, Benjamin M;
- Haendel, Melissa;
- Harmse, Henriette;
- Harris, Nomi L;
- Harrow, Ian;
- Hegde, Harshad B;
- Hoyt, Amelia L;
- Hoyt, Charles T
Publication type:
Article
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069
By:
- Jackson, Rebecca;
- Matentzoglu, Nicolas;
- Overton, James A;
- Vita, Randi;
- Balhoff, James P;
- Buttigieg, Pier Luigi;
- Carbon, Seth;
- Courtot, Melanie;
- Diehl, Alexander D;
- Dooley, Damion M;
- Duncan, William D;
- Harris, Nomi L;
- Haendel, Melissa A;
- Lewis, Suzanna E;
- Natale, Darren A;
- Osumi-Sutherland, David;
- Ruttenberg, Alan;
- Schriml, Lynn M;
- Smith, Barry;
- Stoeckert Jr., Christian J
Publication type:
Article
landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab003
By:
- Chan, Lauren;
- Vasilevsky, Nicole;
- Thessen, Anne;
- McMurry, Julie;
- Haendel, Melissa
Publication type:
Article
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz114
By:
- Gourdine, Jean-Philippe F;
- Brush, Matthew H;
- Vasilevsky, Nicole A;
- Shefchek, Kent;
- Köhler, Sebastian;
- Matentzoglu, Nicolas;
- Munoz-Torres, Monica C;
- McMurry, Julie A;
- Zhang, Xingmin Aaron;
- Robinson, Peter N;
- Haendel, Melissa A
Publication type:
Article
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax087
By:
- Bada, Michael;
- Vasilevsky, Nicole;
- Baumgartner Jr., William A.;
- Haendel, Melissa;
- Hunter, Lawrence E.
Publication type:
Article
Research resources: curating the new eagle-i discovery system†.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Vasilevsky, Nicole;
- Johnson, Tenille;
- Corday, Karen;
- Torniai, Carlo;
- Brush, Matthew;
- Segerdell, Erik;
- Wilson, Melanie;
- Shaffer, Chris;
- Robinson, David;
- Haendel, Melissa
Publication type:
Article
Sharing biological data: why, when, and how.
Published in:
FEBS Letters, 2021, v. 595, n. 7, p. 847, doi. 10.1002/1873-3468.14067
By:
- Wilson, Samantha L.;
- Way, Gregory P.;
- Bittremieux, Wout;
- Armache, Jean‐Paul;
- Haendel, Melissa A.;
- Hoffman, Michael M.
Publication type:
Article
Community Approaches for Integrating Environmental Exposures into Human Models of Disease.
Published in:
Environmental Health Perspectives, 2020, v. 128, n. 12, p. 125002-1, doi. 10.1289/EHP7215
By:
- Thessen, Anne E.;
- Grondin, Cynthia J.;
- Kulkarni, Resham D.;
- Brander, Susanne;
- Truong, Lisa;
- Vasilevsky, Nicole A.;
- Callahan, Tiffany J.;
- Chan, Lauren E.;
- Westra, Brian;
- Willis, Mary;
- Rothenberg, Sarah E.;
- Jarabek, Annie M.;
- Burgoon, Lyle;
- Korrick, Susan A.;
- Haendel, Melissa A.
Publication type:
Article
Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences.
Published in:
Environmental Health Perspectives, 2016, v. 124, n. 8, p. 1136, doi. 10.1289/ehp.1510438
By:
- Mattingly, Carolyn J.;
- Boyles, Rebecca;
- Lawler, Cindy P.;
- Haugen, Astrid C.;
- Dearry, Allen;
- Haendel, Melissa
Publication type:
Article
Risk factors associated with post-acute sequelae of SARS-CoV-2: an N3C and NIH RECOVER study.
Published in:
BMC Public Health, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12889-023-16916-w
By:
- Hill, Elaine L.;
- Mehta, Hemalkumar B.;
- Sharma, Suchetha;
- Mane, Klint;
- Singh, Sharad Kumar;
- Xie, Catherine;
- Cathey, Emily;
- Loomba, Johanna;
- Russell, Seth;
- Spratt, Heidi;
- DeWitt, Peter E.;
- Ammar, Nariman;
- Madlock-Brown, Charisse;
- Brown, Donald;
- McMurry, Julie A.;
- Chute, Christopher G.;
- Haendel, Melissa A.;
- Moffitt, Richard;
- Pfaff, Emily R.;
- Bennett, Tellen D.
Publication type:
Article
Coding long COVID: characterizing a new disease through an ICD-10 lens.
Published in:
BMC Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12916-023-02737-6
By:
- Pfaff, Emily R.;
- Madlock-Brown, Charisse;
- Baratta, John M.;
- Bhatia, Abhishek;
- Davis, Hannah;
- Girvin, Andrew;
- Hill, Elaine;
- Kelly, Elizabeth;
- Kostka, Kristin;
- Loomba, Johanna;
- McMurry, Julie A.;
- Wong, Rachel;
- Bennett, Tellen D.;
- Moffitt, Richard;
- Chute, Christopher G.;
- Haendel, Melissa
Publication type:
Article
Ontology based molecular signatures for immune cell types via gene expression analysis.
Published in:
BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-263
By:
- Meehan, Terrence F.;
- Vasilevsky, Nicole A.;
- Mungall, Christopher J.;
- Dougall, David S.;
- Haendel, Melissa A.;
- Blake, Judith A.;
- Diehl, Alexander D.
Publication type:
Article
GA4GH Phenopackets: A Practical Introduction.
Published in:
Advanced Genetics, 2023, v. 4, n. 1, p. 1, doi. 10.1002/ggn2.202200016
By:
- Ladewig, Markus S.;
- Jacobsen, Julius O. B.;
- Wagner, Alex H.;
- Danis, Daniel;
- El Kassaby, Baha;
- Gargano, Michael;
- Groza, Tudor;
- Baudis, Michael;
- Steinhaus, Robin;
- Seelow, Dominik;
- Bechrakis, Nikolaos E.;
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- Schofield, Paul N.;
- Elemento, Olivier;
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- Munoz‐Torres, Monica;
- Haendel, Melissa A.;
- Robinson, Peter N.
Publication type:
Article
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository.
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Journal of the American Medical Informatics Association, 2023, v. 30, n. 7, p. 1305, doi. 10.1093/jamia/ocad077
By:
- Pfaff, Emily R;
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- Gangireddy, Srushti;
- Master, Hiral;
- Wei, Wei-Qi;
- Kerchberger, V Eric;
- Weiner, Mark;
- Harris, Paul A;
- Basford, Melissa;
- Lunt, Chris;
- Chute, Christopher G;
- Moffitt, Richard A;
- Haendel, Melissa;
- Consortia, N3C and RECOVER
Publication type:
Article
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs.
Published in:
Journal of the American Medical Informatics Association, 2023, v. 30, n. 6, p. 1125, doi. 10.1093/jamia/ocad057
By:
- Leese, Peter;
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- Manna, Amin;
- Patel, Saaya;
- Yoo, Yun Jae;
- Wong, Rachel;
- Haendel, Melissa;
- Chute, Christopher G;
- Bennett, Tellen;
- Hajagos, Janos;
- Pfaff, Emily;
- Moffitt, Richard
Publication type:
Article
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.
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Journal of the American Medical Informatics Association, 2022, v. 29, n. 7, p. 1172, doi. 10.1093/jamia/ocac054
By:
- Bradwell, Katie R;
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- Bennett, Tellen D;
- Anand, Adit;
- Bremer, Carolyn;
- Yoo, Yun Jae;
- Qian, Zhenglong;
- Johnson, Steven G;
- Pfaff, Emily R;
- Girvin, Andrew T;
- Manna, Amin;
- Niehaus, Emily A;
- Hong, Stephanie S;
- Zhang, Xiaohan Tanner;
- Zhu, Richard L;
- Bissell, Mark;
- Qureshi, Nabeel;
- Saltz, Joel;
- Haendel, Melissa A
Publication type:
Article
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
Published in:
2021
By:
- Haendel, Melissa A;
- Chute, Christopher G;
- Bennett, Tellen D;
- Eichmann, David A;
- Guinney, Justin;
- Kibbe, Warren A;
- Payne, Philip R O;
- Pfaff, Emily R;
- Robinson, Peter N;
- Saltz, Joel H;
- Spratt, Heidi;
- Suver, Christine;
- Wilbanks, John;
- Wilcox, Adam B;
- Williams, Andrew E;
- Wu, Chunlei;
- Blacketer, Clair;
- Bradford, Robert L;
- Cimino, James J;
- Clark, Marshall
Publication type:
journal article
A sea of standards for omics data: sink or swim?
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Journal of the American Medical Informatics Association, 2014, v. 21, n. 2, p. 200, doi. 10.1136/amiajnl-2013-002066
By:
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- Haendel, Melissa
Publication type:
Article
Underrepresentation of Phenotypic Variability of 16p13.11 Microduplication Syndrome Assessed With an Online Self-Phenotyping Tool (Phenotypr): Cohort Study.
Published in:
2021
By:
- Li, Jianqiao;
- Hojlo, Margaret A;
- Chennuri, Sampath;
- Gujral, Nitin;
- Paterson, Heather L;
- Shefchek, Kent A;
- Genetti, Casie A;
- Cohn, Emily L;
- Sewalk, Kara C;
- Garvey, Emily A;
- Buttermore, Elizabeth D;
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- Agrawal, Pankaj B;
- Brownstein, John S;
- Haendel, Melissa A;
- Holm, Ingrid A;
- Gonzalez-Heydrich, Joseph;
- Brownstein, Catherine A
Publication type:
journal article
TMOD-19. GABRIELLA MILLER KIDS FIRST DATA RESOURCE CENTER: LARGE-SCALE HARMONIZED CLINICAL AND GENOMIC DATA PLATFORM TO SUPPORT CHILDHOOD CANCER AND STRUCTURAL BIRTH DEFECT RESEARCH.
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Neuro-Oncology, 2019, v. 21, p. ii125, doi. 10.1093/neuonc/noz036.256
By:
- Heath, Allison;
- Raman, Pichai;
- Zhu, Yuankun;
- Lilly, Jena;
- Taylor, Deanne;
- Storm, Phillip;
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- Ferretti, Vincent;
- Mattioni, Michele;
- Davis-Dusenbery, Brandi;
- Flamig, Zachary;
- Grossman, Robert;
- Volchenboum, Samuel;
- Mueller, Sabine;
- Nazarian, Javad;
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Article
The Zebrafish Information Network: the zebrafish model organism database.
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Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d581, doi. 10.1093/nar/gkj086
By:
- Sprague, Judy;
- Bayraktaroglu, Leyla;
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- Conlin, Tom;
- Fashena, David;
- Frazer, Ken;
- Haendel, Melissa;
- Howe, Douglas G.;
- Mani, Prita;
- Ramachandran, Sridhar;
- Schaper, Kevin;
- Segerdell, Erik;
- Song, Peiran;
- Sprunger, Brock;
- Taylor, Sierra;
- Van Slyke, Ceri E.;
- Westerfield, Monte
Publication type:
Article
The IDeaS initiative: pilot study to assess the impact of rare diseases on patients and healthcare systems.
Published in:
2021
By:
- Tisdale, Ainslie;
- Cutillo, Christine M.;
- Nathan, Ramaa;
- Russo, Pierantonio;
- Laraway, Bryan;
- Haendel, Melissa;
- Nowak, Douglas;
- Hasche, Cindy;
- Chan, Chun-Hung;
- Griese, Emily;
- Dawkins, Hugh;
- Shukla, Oodaye;
- Pearce, David A.;
- Rutter, Joni L.;
- Pariser, Anne R.
Publication type:
journal article
Computing on the anatomical form for disease discovery (338.1).
Published in:
FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.338.1
By:
- Haendel, Melissa;
- Mungall, Chris
Publication type:
Article

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