Found: 164
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Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
- Published in:
- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae465
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- Publication type:
- Article
Dasty and UniProt DAS: a perfect pair for protein feature visualization.
- Published in:
- Bioinformatics, 2005, v. 21, n. 14, p. 3198, doi. 10.1093/bioinformatics/bti506
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- Publication type:
- Article
VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.
- Published in:
- Bioinformatics, 2000, v. 16, n. 11, p. 1048, doi. 10.1093/bioinformatics/16.11.1048
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- Publication type:
- Article
A comparison of signal sequence prediction methods using a test set of signal peptides.
- Published in:
- Bioinformatics, 2000, v. 16, n. 8, p. 741, doi. 10.1093/bioinformatics/16.8.741
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- Publication type:
- Article
Swissknife — `lazy parsing' of SWISS‐PROT entries.
- Published in:
- Bioinformatics, 1999, v. 15, n. 9, p. 771, doi. 10.1093/bioinformatics/15.9.771
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- Publication type:
- Article
Mapping Plant Interactomes Using Literature Curated and Predicted Protein–Protein Interaction Data Sets.
- Published in:
- Plant Cell, 2010, v. 22, n. 4, p. 997, doi. 10.1105/tpc.109.072736
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- Publication type:
- Article
Development of data representation standards by the human proteome organization proteomics standards initiative.
- Published in:
- Journal of the American Medical Informatics Association, 2015, v. 22, n. 3, p. 495, doi. 10.1093/jamia/ocv001
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- Publication type:
- Article
BioModels linked dataset
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 91, doi. 10.1186/s12918-014-0091-5
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- Publication type:
- Article
Path2Models: large-scale generation of computational models from biochemical pathway maps.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 3, doi. 10.1186/1752-0509-7-116
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- Publication type:
- Article
Pride Wizard: generation of standards compliant quantitative proteomics data.
- Published in:
- 2007
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- Publication type:
- Abstract
Integrated omics dissection of proteome dynamics during cardiac remodeling.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02467-3
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- Publication type:
- Article
Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 324, doi. 10.1186/1471-2105-13-324
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- Publication type:
- Article
DAS Writeback: A Collaborative Annotation System.
- Published in:
- 2011
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- Publication type:
- Product Review
easyDAS: Automatic creation of DAS servers.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-23
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- Publication type:
- Article
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
- Published in:
- PLoS Biology, 2017, v. 15, n. 6, p. 1, doi. 10.1371/journal.pbio.2001414
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- Publication type:
- Article
BioModels' Model of the Year 2023.
- Published in:
- Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1363884
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- Publication type:
- Article
Reactome and ORCID—fine-grained credit attribution for community curation.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz123
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- Publication type:
- Article
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw088
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- Publication type:
- Article
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.
- Published in:
- 2015
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- Publication type:
- Case Study
Shared resources, shared costs--leveraging biocuration resources.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav009
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- Publication type:
- Article
Capturing cooperative interactions with the PSI-MI format.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat066
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- Publication type:
- Article
The HUPO proteomics standards initiativemass spectrometry controlled vocabulary.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat009
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- Publication type:
- Article
Towards the Collaborative Curation of the Registry underlying identifiers.org.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat017
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- Publication type:
- Article
PRIDE: Quality control in a proteomics data repository.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas004
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- Publication type:
- Article
The Reactome BioMart.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar031
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- Publication type:
- Article
Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar047
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- Publication type:
- Article
The systematic annotation of the three main GPCR families in Reactome.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq018
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- Publication type:
- Article
Reactome pathway analysis: a high-performance in-memory approach.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1559-2
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- Publication type:
- Article
Illuminate the Functions of Dark Proteins Using the Reactome‐IDG Web Portal.
- Published in:
- Current Protocols, 2023, v. 3, n. 7, p. 1, doi. 10.1002/cpz1.845
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- Publication type:
- Article
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- 2020
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- Publication type:
- Correction Notice
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0477-8
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- Publication type:
- Article
HENA, heterogeneous network-based data set for Alzheimer's disease.
- Published in:
- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0152-0
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- Publication type:
- Article
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac212
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- Publication type:
- Article
The HUPO proteomics standards initiative—easing communication and minimizing data loss in a changing world.
- Published in:
- Briefings in Bioinformatics, 2008, v. 9, n. 2, p. 166, doi. 10.1093/bib/bbm061
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- Publication type:
- Article
Wikidata as a knowledge graph for the life sciences.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.52614
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- Publication type:
- Article
PRIDE Inspector: a tool to visualize and validate MS proteomics data.
- Published in:
- 2012
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- Publication type:
- Letter
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
- Published in:
- Nature Biotechnology, 2007, v. 25, n. 10, p. 1127, doi. 10.1038/nbt1347
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- Publication type:
- Article
A common open representation of mass spectrometry data and its application to proteomics research.
- Published in:
- Nature Biotechnology, 2004, v. 22, n. 11, p. 1459, doi. 10.1038/nbt1031
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- Publication type:
- Article
InteroPORC: an automated tool to predict highly conserved protein interaction networks.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P1
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- Publication type:
- Article
Integrating biological data -- the Distributed Annotation System.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S8-S3
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- Publication type:
- Article
The Protein Identifier Cross-Referencing (PICR) service:reconciling protein identifiers across multiple source databases.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 401, doi. 10.1186/1471-2105-8-401
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- Publication type:
- Article
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 97, doi. 10.1186/1471-2105-7-97
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- Publication type:
- Article
ReactomeGSA: new features to simplify public data reuse.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae338
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- Publication type:
- Article
IntAct App: a Cytoscape application for molecular interaction network visualization and analysis.
- Published in:
- Bioinformatics, 2021, v. 37, n. 20, p. 3684, doi. 10.1093/bioinformatics/btab319
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- Publication type:
- Article
decoupled, modular and scriptable architecture for tools to curate data platforms.
- Published in:
- Bioinformatics, 2021, v. 37, n. 20, p. 3693, doi. 10.1093/bioinformatics/btab233
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- Publication type:
- Article
Identifiers.org: Compact Identifier services in the cloud.
- Published in:
- Bioinformatics, 2021, v. 37, n. 12, p. 1781, doi. 10.1093/bioinformatics/btaa864
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- Publication type:
- Article
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
- Published in:
- Bioinformatics, 2020, v. 36, n. 24, p. 5712, doi. 10.1093/bioinformatics/btaa622
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- Publication type:
- Article
BioModels Parameters: a treasure trove of parameter values from published systems biology models.
- Published in:
- Bioinformatics, 2020, v. 36, n. 17, p. 4649, doi. 10.1093/bioinformatics/btaa560
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- Publication type:
- Article
Reactome diagram viewer: data structures and strategies to boost performance.
- Published in:
- Bioinformatics, 2018, v. 34, n. 7, p. 1208, doi. 10.1093/bioinformatics/btx752
- By:
- Publication type:
- Article
Towards a unified open access dataset of molecular interactions.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19942-z
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- Publication type:
- Article