Works by HASPEL, NURIT

Results: 24

Taking geometry to its edge: Fast unbound rigid (and hinge-bent) docking (This article is a US Government work and, as such, is in the public domain in the United States of America.).

Published in:

Proteins, 2003, v. 52, n. 1, p. 107, doi. 10.1002/prot.10397

By:

Dina Schneidman-Duhovny;
Yuval Inbar;
Vladimir Polak;
Maxim Shatsky;
Inbal Halperin;
Hadar Benyamini;
Adi Barzilai;
Oranit Dror;
Nurit Haspel;
Ruth Nussinov;
Haim J. Wolfson

Publication type:

Article

Hierarchical protein folding pathways: A computational study of protein fragments (This article is a US Government work and, as such, is in the public domain in the United States of America.) The content of this publication does not necessarily reflect the view or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organization imply endorsement by the U.S. Government.)

Published in:

Proteins, 2003, v. 51, n. 2, p. 203, doi. 10.1002/prot.10294

By:

Nurit Haspel;
Chung-Jung Tsai;
Haim Wolfson

Publication type:

Article

A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly.

Published in:

Bioinformatics, 2006, v. 22, n. 11, p. 1343, doi. 10.1093/bioinformatics/btl098

By:

Gilad Wainreb;
Nurit Haspel;
Haim J. Wolfson;
Ruth Nussinov

Publication type:

Article

Electrostatic contributions drive the interaction between Staphylococcus aureus protein Efb-C and its complement target C3d.

Published in:

Protein Science: A Publication of the Protein Society, 2008, v. 17, n. 11, p. 1894, doi. 10.1110/ps.036624.108

By:

Haspel, Nurit;
Ricklin, Daniel;
Geisbrecht, Brian V.;
Kavraki, Lydia E.;
Lambris, John D.

Publication type:

Article

Reducing the computational complexity of protein folding via fragment folding and assembly.

Published in:

Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 6, p. 1177, doi. 10.1110/ps.0232903

By:

Haspel, Nurit;
Tsai, Chung-Jung;
Wolfson, Haim;
Nussinov, Ruth

Publication type:

Article

Detecting intermediate protein conformations using algebraic topology.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1918-z

By:

Haspel, Nurit;
Dong Luo;
González, Eduardo

Publication type:

Article

Patch-DCA: improved protein interface prediction by utilizing structural information and clustering DCA scores.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1460, doi. 10.1093/bioinformatics/btz791

By:

Vajdi, Amir;
Zarringhalam, Kourosh;
Haspel, Nurit

Publication type:

Article

Multi-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex.

Published in:

Proteins, 2010, v. 78, n. 4, p. 1004, doi. 10.1002/prot.22624

By:

Haspel, Nurit;
Geisbrecht, Brian V.;
Lambris, John;
Kavraki, Lydia

Publication type:

Article

Principles of nanostructure design with protein building blocks.

Published in:

Proteins, 2007, v. 68, n. 1, p. 1, doi. 10.1002/prot.21413

By:

Tsai, Chung-Jung;
Zheng, Jie;
Zanuy, David;
Haspel, Nurit;
Wolfson, Haim;
Alemán, Carlos;
Nussinov, Ruth

Publication type:

Article

Elucidating the Structural Impacts of Protein InDels.

Published in:

Biomolecules (2218-273X), 2022, v. 12, n. 10, p. N.PAG, doi. 10.3390/biom12101435

By:

Jilani, Muneeba;
Turcan, Alistair;
Haspel, Nurit;
Jagodzinski, Filip

Publication type:

Article

A conservation and biophysics guided stochastic approach to refining docked multimeric proteins.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S7

By:

Akbal-Delibas, Bahar;
Haspel, Nurit

Publication type:

Article

A conservation and rigidity based method for detecting critical protein residues.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S6

By:

Akbal-Delibas, Bahar;
Jagodzinski, Filip;
Haspel, Nurit

Publication type:

Article

The 6th Computational Structural Bioinformatics Workshop.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-I1

By:

Jing He;
Shehu, Amarda;
Haspel, Nurit;
Brian Chen

Publication type:

Article

Tracing conformational changes in proteins.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S1

By:

Haspel, Nurit;
Moll, Mark;
Baker, Matthew L.;
Chiu, Wah;
Kavraki, Lydia E.

Publication type:

Article

Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016).

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017020024

By:

Haspel, Nurit;
Ioerger, Thomas;
Al-Mubaid, Hisham

Publication type:

Article

Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015).

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 3, p. -1, doi. 10.1142/S0219720016020029

By:

Saeed, Fahad;
Haspel, Nurit;
Al-Mubaid, Hisham

Publication type:

Article

Accurate refinement of docked protein complexes using evolutionary information and deep learning.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 3, p. -1, doi. 10.1142/S0219720016420026

By:

Akbal-Delibas, Bahar;
Farhoodi, Roshanak;
Pomplun, Marc;
Haspel, Nurit

Publication type:

Article

AN EVOLUTIONARY CONSERVATION-BASED METHOD FOR REFINING AND RERANKING PROTEIN COMPLEX STRUCTURES.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 3, p. 1242002-1, doi. 10.1142/S0219720012420024

By:

AKBAL-DELIBAS, BAHAR;
HASHMI, IRINA;
SHEHU, AMARDA;
HASPEL, NURIT

Publication type:

Article

GUIDING PROTEIN DOCKING WITH GEOMETRIC AND EVOLUTIONARY INFORMATION.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 3, p. 1242008-1, doi. 10.1142/S0219720012420085

By:

HASHMI, IRINA;
AKBAL-DELIBAS, BAHAR;
HASPEL, NURIT;
SHEHU, AMARDA

Publication type:

Article

THE 5TH INTERNATIONAL CONFERENCE ON BIO-INSPIRED MODELS OF NETWORK, INFORMATION AND COMPUTING SYSTEMS (BIONETICS 2010) SPECIAL TRACK ON BIOINFORMATICS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 3, p. v, doi. 10.1142/S0219720011005616

By:

HASPEL, NURIT;
SHEHU, AMARDA

Publication type:

Article

Elucidating Cancer Subtypes by Using the Relationship between DNA Methylation and Gene Expression.

Published in:

Genes, 2024, v. 15, n. 5, p. 631, doi. 10.3390/genes15050631

By:

Jilani, Muneeba;
Degras, David;
Haspel, Nurit

Publication type:

Article

Integrating Rigidity Analysis into the Exploration of Protein Conformational Pathways Using RRT* and MC.

Published in:

Molecules, 2021, v. 26, n. 8, p. 2329, doi. 10.3390/molecules26082329

By:

Afrasiabi, Fatemeh;
Dehghanpoor, Ramin;
Haspel, Nurit

Publication type:

Article

Tracing Actin Filament Bundles in Three-Dimensional Electron Tomography Density Maps of Hair Cell Stereocilia.

Published in:

Molecules, 2018, v. 23, n. 4, p. 882, doi. 10.3390/molecules23040882

By:

Sazzed, Salim;
Song, Junha;
Kovacs, Julio A.;
Wriggers, Willy;
Auer, Manfred;
He, Jing;
Shehu, Amarda;
Haspel, Nurit

Publication type:

Article

Predicting the Effect of Single and Multiple Mutations on Protein Structural Stability.

Published in:

Molecules, 2018, v. 23, n. 2, p. 251, doi. 10.3390/molecules23020251

By:

Dehghanpoor, Ramin;
Ricks, Evan;
Hursh, Katie;
Gunderson, Sarah;
Farhoodi, Roshanak;
Haspel, Nurit;
Hutchinson, Brian;
Jagodzinski, Filip

Publication type:

Article