Works matching AU Höner zu Siederdissen, Christian

Results: 23

Computational design of RNAs with complex energy landscapes.

Published in:

Biopolymers, 2013, v. 99, n. 12, p. 1124, doi. 10.1002/bip.22337

By:

Höner zu Siederdissen, Christian;
Hammer, Stefan;
Abfalter, Ingrid;
Hofacker, Ivo L.;
Flamm, Christoph;
Stadler, Peter F.

Publication type:

Article

A folding algorithm for extended RNA secondary structures.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i129, doi. 10.1093/bioinformatics/btr220

By:

zu Siederdissen, Christian Höner;
Bernhart, Stephan H.;
Stadler, Peter F.;
Hofacker, Ivo L.

Publication type:

Article

Discriminatory power of RNA family models.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i453, doi. 10.1093/bioinformatics/btq370

By:

Siederdissen, Christian Höner zu;
Hofacker, Ivo L.

Publication type:

Article

Selection Pressures on RNA Sequences and Structures.

Published in:

Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319871919

By:

Nowick, Katja;
Walter Costa, Maria Beatriz;
Höner zu Siederdissen, Christian;
Stadler, Peter F

Publication type:

Article

Selection Pressures on RNA Sequences and Structures.

Published in:

Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319871919

By:

Nowick, Katja;
Walter Costa, Maria Beatriz;
Höner zu Siederdissen, Christian;
Stadler, Peter F

Publication type:

Article

Algebraic Dynamic Programming over general data structures.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S2

By:

zu Siederdissen, Christian Höner;
Prohaska, Sonja J.;
Stadler, Peter F.

Publication type:

Article

Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer.

Published in:

Human Genomics, 2023, v. 17, n. 1, p. 1, doi. 10.1186/s40246-023-00537-w

By:

Safrastyan, Aram;
zu Siederdissen, Christian Höner;
Wollny, Damian

Publication type:

Article

Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem.

Published in:

Journal of Mathematical Biology, 2018, v. 77, n. 2, p. 313, doi. 10.1007/s00285-017-1197-3

By:

Prohaska, Sonja J.;
Berkemer, Sarah J.;
Gärtner, Fabian;
Gatter, Thomas;
Retzlaff, Nancy;
The Students of the Graphs and Biological Networks Lab 2017;
Höner zu Siederdissen, Christian;
Stadler, Peter F.

Publication type:

Article

Selection Pressures on RNA Sequences and Structures.

Published in:

Evolutionary Bioinformatics, 2019, p. 1, doi. 10.1177/1176934319871919

By:

Nowick, Katja;
Walter Costa, Maria Beatriz;
Höner zu Siederdissen, Christian;
Stadler, Peter F

Publication type:

Article

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0139900

By:

Theis, Corinna;
Zirbel, Craig L.;
zu Siederdissen, Christian Höner;
Anthon, Christian;
Hofacker, Ivo L.;
Nielsen, Henrik;
Gorodkin, Jan

Publication type:

Article

Animal snoRNAs and scaRNAs with exceptional structures.

Published in:

RNA Biology, 2011, v. 8, n. 6, p. 1, doi. 10.4161/rna.8.6.16603

By:

Marz, Manja;
Gruber, Andreas R.;
Siederdissen, Christian Höner zu;
Amman, Fabian;
Badelt, Stefan;
Bartschat, Sebastian;
Bernhart, Stephan H.;
Beyer, Wolfgang;
Kehr, Stephanie;
Lorenz, Ronny;
Tanzer, Andrea;
Yusuf, Dilmurat;
Tafer, Hakim;
Hofacker, Ivo L.;
Stadler, Peter F.

Publication type:

Article

Coordinate systems for supergenomes.

Published in:

Algorithms for Molecular Biology, 2018, v. 13, n. 1, p. N.PAG, doi. 10.1186/s13015-018-0133-4

By:

Gärtner, Fabian;
Stadler, Peter F.;
Müller, Lydia;
Höner zu Siederdissen, Christian

Publication type:

Article

Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements.

Published in:

Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0113-0

By:

Al Arab, Marwa;
Bernt, Matthias;
Siederdissen, Christian Höner zu;
Tout, Kifah;
Stadler, Peter F.

Publication type:

Article

Algebraic Dynamic Programming on Trees.

Published in:

Algorithms, 2017, v. 10, n. 4, p. 135, doi. 10.3390/a10040135

By:

Berkemer, Sarah J.;
Siederdissen, Christian Höner zu;
Stadler, Peter F.

Publication type:

Article

CMV: visualization for RNA and protein family models and their comparisons.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2676, doi. 10.1093/bioinformatics/bty158

By:

Eggenhofer, Florian;
Hofacker, Ivo L;
Backofen, Rolf;
Siederdissen, Christian Höner zu

Publication type:

Article

flowEMMi: an automated model-based clustering tool for microbial cytometric data.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3152-3

By:

Ludwig, Joachim;
zu Siederdissen, Christian Höner;
Liu, Zishu;
Stadler, Peter F.;
Müller, Susann

Publication type:

Article

SSS-test: a novel test for detecting positive selection on RNA secondary structure.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2711-y

By:

Walter Costa, Maria Beatriz;
Höner zu Siederdissen, Christian;
Dunjić, Marko;
Stadler, Peter F.;
Nowick, Katja

Publication type:

Article

Superbubbles as an empirical characteristic of directed networks.

Published in:

Network Science, 2021, v. 9, n. 1, p. 49, doi. 10.1017/nws.2020.32

By:

Gärtner, Fabian;
Kühnl, Felix;
Seemann, Carsten R.;
Zu Siederdissen, Christian Höner;
Stadler, Peter F.

Publication type:

Article

RNAlien - Unsupervised RNA family model construction.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 17, p. 8433, doi. 10.1093/nar/gkw558

By:

Eggenhofer, Florian;
Hofacker, Ivo L.;
Siederdissen, Christian Höner zu

Publication type:

Article

Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8044, doi. 10.1093/nar/gkv746

By:

Sahyoun, Abdullah H.;
Hölzer, Martin;
Jühling, Frank;
zu Siederdissen, Christian Höner;
Al-Arab, Marwa;
Tout, Kifah;
Marz, Manja;
Middendorf, Martin;
Stadler, Peter F.;
Bernt, Matthias

Publication type:

Article

Automated identification of RNA 3D modules with discriminative power in RNA structural alignments.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 9999, doi. 10.1093/nar/gkt795

By:

Theis, Corinna;
Höner zu Siederdissen, Christian;
Hofacker, Ivo L.;
Gorodkin, Jan

Publication type:

Article

CMCompare webserver: comparing RNA families via covariance models.

Published in:

Nucleic Acids Research, 2013, v. 41, p. W499, doi. 10.1093/nar/gkt329

By:

Eggenhofer, Florian;
Hofacker, Ivo L.;
zu Siederdissen, Christian Höner

Publication type:

Article

microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure.

Published in:

Cellular & Molecular Life Sciences, 2017, v. 74, n. 4, p. 747, doi. 10.1007/s00018-016-2377-9

By:

Gerresheim, Gesche;
Dünnes, Nadia;
Nieder-Röhrmann, Anika;
Shalamova, Lyudmila;
Fricke, Markus;
Hofacker, Ivo;
Höner zu Siederdissen, Christian;
Marz, Manja;
Niepmann, Michael

Publication type:

Article