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Endogenous Bornavirus-like Elements in Bats: Evolutionary Insights from the Conserved Riboviral L-Gene in Microbats and Its Antisense Transcription in Myotis daubentonii.
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- Viruses (1999-4915), 2024, v. 16, n. 8, p. 1210, doi. 10.3390/v16081210
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- Article
SLC35F2, a Transporter Sporadically Mutated in the Untranslated Region, Promotes Growth, Migration, and Invasion of Bladder Cancer Cells.
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- Cells (2073-4409), 2021, v. 10, n. 1, p. 80, doi. 10.3390/cells10010080
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- Article
Advancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 2021.
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- Clinical Infectious Diseases, 2022, v. 75, p. S110, doi. 10.1093/cid/ciac399
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- Article
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011422
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- Article
Comprehensive Insights in the Mycobacterium avium subsp. paratuberculosis Genome Using New WGS Data of Sheep Strain JIII-386 from Germany.
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- Genome Biology & Evolution, 2015, v. 7, n. 9, p. 2585, doi. 10.1093/gbe/evv154
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- Article
Reduced IQGAP2 Promotes Bladder Cancer through Regulation of MAPK/ERK Pathway and Cytokines.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 21, p. 13508, doi. 10.3390/ijms232113508
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- Article
The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers.
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- Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00395-w
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- Article
RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow.
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- Genes, 2020, v. 11, n. 12, p. 1487, doi. 10.3390/genes11121487
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- Article
Sequencing accuracy and systematic errors of nanopore direct RNA sequencing.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10440-w
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- Article
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
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- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 642, doi. 10.1093/bib/bbaa232
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- Article
poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing.
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- Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.711437
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- Article
Ab initio description of the thermoelectric properties of heterostructures in the diffusive limit of transport.
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- Physica Status Solidi. A: Applications & Materials Science, 2016, v. 213, n. 3, p. 672, doi. 10.1002/pssa.201532410
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- Article
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy.
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- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae175
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- Article
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
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- Bioinformatics, 2022, v. 38, n. 17, p. 4223, doi. 10.1093/bioinformatics/btac411
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- Article
EpiDope: a deep neural network for linear B-cell epitope prediction.
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- Bioinformatics, 2021, v. 37, n. 12, p. 1784, doi. 10.1093/bioinformatics/btab390
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- Article
PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection.
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- Bioinformatics, 2021, v. 37, n. 7, p. 1018, doi. 10.1093/bioinformatics/btaa695
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- Article
EpiDope: a deep neural network for linear B-cell epitope prediction.
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- Bioinformatics, 2021, v. 37, n. 4, p. 448, doi. 10.1093/bioinformatics/btaa773
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- Article
A marine Chlamydomonas sp. emerging as an algal model.
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- Journal of Phycology, 2021, v. 57, n. 1, p. 54, doi. 10.1111/jpy.13083
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- Article
Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system.
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- Environmental Microbiology, 2020, v. 22, n. 9, p. 4000, doi. 10.1111/1462-2920.15186
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- Article
Carbon fixation rates in groundwater similar to those in oligotrophic marine systems.
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- Nature Geoscience, 2022, v. 15, n. 7, p. 561, doi. 10.1038/s41561-022-00968-5
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- Article
Comparative transcriptomics identifies candidate genes involved in the evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae).
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- BMC Plant Biology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12870-022-03631-8
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- Article
Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species.
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- Pathogens, 2020, v. 9, n. 11, p. 899, doi. 10.3390/pathogens9110899
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- Article
Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D.
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- Scientific Reports, 2017, p. 40598, doi. 10.1038/srep40598
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- Article
Differential Effects of Vitamins A and D on the Transcriptional Landscape of Human Monocytes during Infection.
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- Scientific Reports, 2017, p. 40599, doi. 10.1038/srep40599
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- Article
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
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- Scientific Reports, 2016, p. 34589, doi. 10.1038/srep34589
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- Article
Corrigendum: poreCov - An Easy to Use, Fast, and Robust Workflow for SARS CoV-2 Genome Reconstruction via Nanopore Sequencing.
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- 2022
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- Correction Notice
Antibody escape and global spread of SARS-CoV-2 lineage A.27.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28766-y
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- Article
RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03312-9
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- Article
A decade of de novo transcriptome assembly: Are we there yet?
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- Molecular Ecology Resources, 2021, v. 21, n. 1, p. 11, doi. 10.1111/1755-0998.13268
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- Article
Enhanced glycerol assimilation and lipid production in Rhodotorula toruloides CBS14 upon addition of hemicellulose primarily correlates with early transcription of energy-metabolism-related genes.
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- Biotechnology for Biofuels & Bioproducts, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13068-023-02294-3
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- Article
What the Phage: a scalable workflow for the identification and analysis of phage sequences.
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- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac110
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- Article
De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers.
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- GigaScience, 2019, v. 8, n. 5, p. N.PAG, doi. 10.1093/gigascience/giz039
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- Article
Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes.
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- Nucleic Acids Research, 2015, v. 43, n. 16, p. 8044, doi. 10.1093/nar/gkv746
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- Article
Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09228-1
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- Article
RUNX3 Transcript Variants Have Distinct Roles in Ovarian Carcinoma and Differently Influence Platinum Sensitivity and Angiogenesis.
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- Cancers, 2021, v. 13, n. 3, p. 476, doi. 10.3390/cancers13030476
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- Article
Differential Transcriptional Responses of Human Granulocytes to Fungal Infection with Candida albicans and Aspergillus fumigatus.
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- Journal of Fungi, 2023, v. 9, n. 10, p. 1014, doi. 10.3390/jof9101014
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- Article
Near Chromosome-Level Genome Assembly and Annotation of Rhodotorula babjevae Strains Reveals High Intraspecific Divergence.
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- Journal of Fungi, 2022, v. 8, n. 4, p. 323, doi. 10.3390/jof8040323
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- Article
Investigation of a Limited but Explosive COVID-19 Outbreak in a German Secondary School.
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- Viruses (1999-4915), 2022, v. 14, n. 1, p. 87, doi. 10.3390/v14010087
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- Article
Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany.
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- Viruses (1999-4915), 2021, v. 13, n. 8, p. 1491, doi. 10.3390/v13081491
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- Article
Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters.
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- Viruses (1999-4915), 2019, v. 11, n. 6, p. 484, doi. 10.3390/v11060484
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- Article
Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis.
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- Viruses (1999-4915), 2019, v. 11, n. 5, p. 449, doi. 10.3390/v11050449
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- Article
De novo genome assembly resolving repetitive structures enables genomic analysis of 35 European Mycoplasmopsis bovis strains.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09618-5
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- Article
Genomic analysis of 61 Chlamydia psittaci strains reveals extensive divergence associated with host preference.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09370-w
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- Article
Comparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09343-z
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- Article
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).
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- PLoS Computational Biology, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.pcbi.1008716
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- Article