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The population context is a driver of the heterogeneous response of epithelial cells to interferons.
- Published in:
- Molecular Systems Biology, 2024, v. 20, n. 3, p. 242, doi. 10.1038/s44320-024-00011-2
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- Article
Extended methods for spatial cell classification with DBSCAN-CellX.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-45190-4
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- Article
DEAD box RNA helicases act as nucleotide exchange factors for casein kinase 2.
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- Science Signaling, 2023, v. 16, n. 782, p. 1, doi. 10.1126/scisignal.abp8923
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- Article
Interferon regulates neural stem cell function at all ages by orchestrating mTOR and cell cycle.
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- EMBO Molecular Medicine, 2023, v. 15, n. 4, p. 1, doi. 10.15252/emmm.202216434
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- Article
Usp22 is an intracellular regulator of systemic emergency hematopoiesis.
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- Science Immunology, 2022, v. 7, n. 78, p. 1, doi. 10.1126/sciimmunol.abq2061
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- Article
Adaptation to host cell environment during experimental evolution of Zika virus.
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- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03902-y
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- Article
Modeling the B‐cell receptor signaling on single cell level reveals a stable network circuit topology between nonmalignant B cells and chronic lymphocytic leukemia cells and between untreated cells and cells treated with kinase inhibitors.
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- International Journal of Cancer, 2022, v. 151, n. 5, p. 783, doi. 10.1002/ijc.34112
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- Article
Dissecting the dynamic transcriptional landscape of early T helper cell differentiation into Th1, Th2, and Th1/2 hybrid cells.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.928018
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- Article
Data-driven modelling captures dynamics of the circadian clock of Neurospora crassa.
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- PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010331
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- Article
Fate mapping of hematopoietic stem cells reveals two pathways of native thrombopoiesis.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31914-z
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- Article
Carbon ion radiotherapy eradicates medulloblastomas with chromothripsis in an orthotopic Li-Fraumeni patient-derived mouse model.
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- Neuro-Oncology, 2021, v. 23, n. 12, p. 2028, doi. 10.1093/neuonc/noab127
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- Article
Hidden long-range memories of growth and cycle speed correlate cell cycles in lineage trees.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.51002
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- Article
A Missing Switch in Peptide Exchange for MHC Class II Molecules.
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- Frontiers in Immunology, 2019, v. 10, p. 1, doi. 10.3389/fimmu.2019.02513
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- Publication type:
- Article
Using Cre-recombinase-driven Polylox barcoding for in vivo fate mapping in mice.
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- Nature Protocols, 2019, v. 14, n. 6, p. 1820, doi. 10.1038/s41596-019-0163-5
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- Article
Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance.
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- PLoS Pathogens, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.ppat.1007420
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- Article
Rasch wachsende verruköse axilläre Tumoren, multiple Erosionen, Pusteln und Cheilitis.
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- Journal der Deutschen Dermatologischen Gesellschaft, 2018, v. 16, n. 10, p. 1269, doi. 10.1111/ddg.13661_g
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- Article
Rapidly growing verrucous axillary tumors, multiple erosions, pustules, and cheilitis.
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- Journal der Deutschen Dermatologischen Gesellschaft, 2018, v. 16, n. 10, p. 1269, doi. 10.1111/ddg.13661
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- Article
Antiviral interferon response at single‐cell resolution.
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- Immunological Reviews, 2018, v. 285, n. 1, p. 72, doi. 10.1111/imr.12699
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- Article
Clonal selection drives protective memory B cell responses in controlled human malaria infection.
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- Science Immunology, 2018, v. 3, n. 20, p. 1, doi. 10.1126/sciimmunol.aap8029
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- Article
Phenotypic memory in Bacillus subtilis links dormancy entry and exit by a spore quantityquality tradeoff.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02477-1
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- Publication type:
- Article
Robust classification of single-cell transcriptome data by nonnegative matrix factorization.
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- Bioinformatics, 2017, v. 33, n. 2, p. 235, doi. 10.1093/bioinformatics/btw607
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- Publication type:
- Article
Protein abundance of AKT and ERK pathway components governs cell type-specific regulation of proliferation.
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- Molecular Systems Biology, 2017, v. 13, n. 1, p. n/a, doi. 10.15252/msb.20167258
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- Publication type:
- Article
Live Cell Analysis and Mathematical Modeling Identify Determinants of Attenuation of Dengue Virus 2’-O-Methylation Mutant.
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- PLoS Pathogens, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.ppat.1005345
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- Article
CD8<sup>+</sup> T cell diversification by asymmetric cell division.
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- Nature Immunology, 2015, v. 16, n. 9, p. 891, doi. 10.1038/ni.3235
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- Article
Regulatory toxicology in the twenty-first century: challenges, perspectives and possible solutions.
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- Archives of Toxicology, 2015, v. 89, n. 6, p. 823, doi. 10.1007/s00204-015-1510-0
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- Article
Three-Dimensional Gradients of Cytokine Signaling between T Cells.
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- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004206
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- Article
Fundamental properties of unperturbed haematopoiesis from stem cells in vivo.
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- Nature, 2015, v. 518, n. 7540, p. 542, doi. 10.1038/nature14242
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- Article
Specificity, propagation, and memory of pericentric heterochromatin.
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- Molecular Systems Biology, 2014, v. 10, n. 8, p. n/a, doi. 10.15252/msb.20145377
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- Article
Robustness of DNA Repair through Collective Rate Control.
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- PLoS Computational Biology, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.pcbi.1003438
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- Article
Stable T-bet<sup>+</sup>GATA-3<sup>+</sup> Th1/Th2 Hybrid Cells Arise <i>In Vivo</i>, Can Develop Directly from Naive Precursors, and Limit Immunopathologic Inflammation.
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- PLoS Biology, 2013, v. 11, n. 8, p. 1, doi. 10.1371/journal.pbio.1001633
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- Article
The Neurospora photoreceptor VIVID exerts negative and positive control on light sensing to achieve adaptation.
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- Molecular Systems Biology, 2013, v. 9, n. 1, p. 667, doi. 10.1038/msb.2013.24
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- Article
Heterogeneous kinetics of AKT signaling in individual cells are accounted for by variable protein concentration.
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- Frontiers in Physiology, 2012, v. 3, p. 1, doi. 10.3389/fphys.2012.00451
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- Article
Genome-wide nucleosome positioning during embryonic stem cell development.
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- Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1185, doi. 10.1038/nsmb.2419
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- Article
Competition for IL-2 between regulatory and effectorT cells to chisel immune responses.
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- Frontiers in Immunology, 2012, v. 3, p. 1, doi. 10.3389/fimmu.2012.00268
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- Publication type:
- Article
Competition for IL-2 between regulatory and effector T cells to chisel immune responses.
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- Frontiers in Immunology, 2012, v. 3, p. 1, doi. 10.3389/fimmu.2012.00268
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- Article
Multi‐layered stochasticity and paracrine signal propagation shape the type‐I interferon response.
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- Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.17
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- Article
Estimation of the Acute Inhalation Hazards of Chemicals Based on Route-to-route and Local Endpoint Extrapolation: Experience from Bulk Maritime Transport.
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- Alternatives to Laboratory Animals, 2011, v. 39, n. 6, p. 541, doi. 10.1177/026119291103900609
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- Article
Quantitative Analysis of Protein Phosphorylations and Interactions by Multi-Colour IP-FCM as an Input for Kinetic Modelling of Signalling Networks.
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- PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022928
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- Article
Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair.
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- Journal of Cell Biology, 2010, v. 189, n. 3, p. 445, doi. 10.1083/jcb.200909175
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- Article
Mathematical Modelling of DNA Replication Reveals a Trade-off between Coherence of Origin Activation and Robustness against Rereplication.
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- PLoS Computational Biology, 2010, v. 6, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000783
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- Publication type:
- Article
Short-term memory in gene induction reveals the regulatory principle behind stochastic IL-4 expression.
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- Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.13
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- Article
Modelling and simulating interleukin-10 production and regulation by macrophages after stimulation with an immunomodulator of parasitic nematodes.
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- FEBS Journal, 2009, v. 276, n. 13, p. 3454, doi. 10.1111/j.1742-4658.2009.07068.x
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- Article
Multisite protein phosphorylation – from molecular mechanisms to kinetic models.
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- FEBS Journal, 2009, v. 276, n. 12, p. 3177, doi. 10.1111/j.1742-4658.2009.07027.x
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- Article
Assembly of multiprotein complexes that control genome function.
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- Journal of Cell Biology, 2009, v. 185, n. 1, p. 21, doi. 10.1083/jcb.200811080
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- Article
Competition for cytokines: T<sub>reg</sub> cells take all.
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- Nature Immunology, 2007, v. 8, n. 12, p. 1285, doi. 10.1038/ni1207-1285
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- Article
Versatile regulation of multisite protein phosphorylation by the order of phosphate processing and protein–protein interactions.
- Published in:
- FEBS Journal, 2007, v. 274, n. 4, p. 1046, doi. 10.1111/j.1742-4658.2007.05653.x
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- Article
In Remembrance: Reinhart Heinrich 1946-2006.
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- 2007
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- Obituary
Competition Effects Shape the Response Sensitivity and Kinetics of Phosphorylation Cycles in Cell Signaling.
- Published in:
- Annals of the New York Academy of Sciences, 2006, v. 1091, n. 1, p. 517, doi. 10.1196/annals.1378.093
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- Article
Adaptation of humoral memory.
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- Immunological Reviews, 2006, v. 211, n. 1, p. 295, doi. 10.1111/j.0105-2896.2006.00380.x
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- Article
Regulation of CD4.
- Published in:
- European Journal of Immunology, 2005, v. 35, n. 5, p. 1336, doi. 10.1002/eji.200425887
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- Article