Works by Guo, Feng ‐ Biao

Results: 55

Systematic identification of cancer-type-specific drugs based on essential genes and validations in lung adenocarcinoma Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf266

By:

Lian, Xiang;
Kuang, Xia;
Zhang, Dong-Dong;
Xu, Qian;
Ye, Anqiang;
Wang, Cheng-Yu;
Cui, Hong-Tu;
Guo, Hai-Xia;
Zhang, Ji-Yun;
Liu, Yuan;
Hao, Ge-Fei;
Cheng, Zhenshun;
Guo, Feng-Biao

Publication type:

Article

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area.

Published in:

Chromosome Research, 2009, v. 17, n. 3, p. 359, doi. 10.1007/s10577-009-9024-3

By:

Feng-Biao Guo;
Hao Lin;
Jian Huang

Publication type:

Article

PREDICTING SUBCHLOROPLAST LOCATIONS OF PROTEINS BASED ON THE GENERAL FORM OF CHOU'S PSEUDO AMINO ACID COMPOSITION: APPROACHED FROM OPTIMAL TRIPEPTIDE COMPOSITION.

Published in:

International Journal of Biomathematics, 2013, v. 6, n. 2, p. 1350003-1, doi. 10.1142/S1793524513500034

By:

HAO LIN;
CHEN DING;
LU-FENG YUAN;
WET CHEN;
HUI DING;
ZI-QIANG LI;
FENG-BIAO GUO;
JIAN HUANG;
NI-NI RAO

Publication type:

Article

GMMAD: a comprehensive database of human gut microbial metabolite associations with diseases.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09599-5

By:

Wang, Cheng-Yu;
Kuang, Xia;
Wang, Qiao-Qiao;
Zhang, Gu-Qin;
Cheng, Zhen-Shun;
Deng, Zi-Xin;
Guo, Feng-Biao

Publication type:

Article

MimoDB 2.0: a mimotope database and beyond.

Published in:

Nucleic Acids Research, 2012, p. D271, doi. 10.1093/nar/gkr922

By:

Huang, Jian;
Ru, Beibei;
Zhu, Ping;
Nie, Fulei;
Yang, Jun;
Wang, Xuyang;
Dai, Ping;
Lin, Hao;
Guo, Feng-Biao;
Rao, Nini

Publication type:

Article

ZCURVE: a new system for recognizing protein‐coding genes in bacterial and archaeal genomes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 6, p. 1780, doi. 10.1093/nar/gkg254

By:

Guo, Feng‐Biao;
Ou, Hong‐Yu;
Zhang, Chun‐Ting

Publication type:

Article

CasLocusAnno: a web‐based server for annotating cas loci and their corresponding (sub)types.

Published in:

FEBS Letters, 2019, v. 593, n. 18, p. 2646, doi. 10.1002/1873-3468.13519

By:

Dong, Chuan;
Zeng, Zhi;
Pu, Dong‐Kai;
Wen, Qing‐Feng;
Liu, Shuo;
Du, Meng‐Ze;
Sun, Yan;
Gao, Yi‐Zhou;
Rao, Nini;
Huang, Jian;
Guo, Feng‐Biao

Publication type:

Article

Comprehensive exploration of the enzymes catalysing oxygen‐involved reactions and COGs relevant to bacterial oxygen utilization.

Published in:

Environmental Microbiology, 2018, v. 20, n. 10, p. 3836, doi. 10.1111/1462-2920.14399

By:

Liu, Shuo;
Du, Meng‐Ze;
Wen, Qing‐Feng;
Kang, Juanjuan;
Dong, Chuan;
Xiong, Lifeng;
Huang, Jian;
Guo, Feng‐Biao

Publication type:

Article

Laribacter hongkongensis anaerobic adaptation mediated by arginine metabolism is controlled by the cooperation of FNR and ArgR.

Published in:

Environmental Microbiology, 2017, v. 19, n. 3, p. 1266, doi. 10.1111/1462-2920.13657

By:

Xiong, Lifeng;
Yang, Ying;
Ye, Yuan ‐ Nong;
Teng, Jade L. L.;
Chan, Elaine;
Watt, Rory M.;
Guo, Feng ‐ Biao;
Lau, Susanna K. P.;
Woo, Patrick C. Y.

Publication type:

Article

Consistent Clustering Pattern of Prokaryotic Genes Based on Base Frequency at the Second Codon Position and its Association with Functional Category Preference.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2022, v. 14, n. 2, p. 349, doi. 10.1007/s12539-021-00493-w

By:

Jin, Yan-Ting;
Ma, Cong;
Wang, Xin;
Wang, Shu-Xuan;
Zhang, Kai-Yue;
Zheng, Wen-Xin;
Deng, Zixin;
Wang, Ju;
Guo, Feng-Biao

Publication type:

Article

Genomic Complexity Places Less Restrictions on the Evolution of Young Coexpression Networks than Protein--Protein Interactions.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 8, p. 2624, doi. 10.1093/gbe/evw198

By:

Wen Wei;
Yan-Ting Jin;
Meng-Ze Du;
Ju Wang;
Nini Rao;
Feng-Biao Guo

Publication type:

Article

Multiple Factors Drive Replicating Strand Composition Bias in Bacterial Genomes.

Published in:

International Journal of Molecular Sciences, 2015, v. 16, n. 9, p. 23111, doi. 10.3390/ijms160923111

By:

Hai-Long Zhao;
Zhong-Kui Xia;
Fa-Zhan Zhang;
Yuan-Nong Ye;
Feng-Biao Guo

Publication type:

Article

Prediction of Genomic Islands in Three Bacterial Pathogens of Pneumonia.

Published in:

International Journal of Molecular Sciences, 2012, v. 13, n. 3, p. 3134, doi. 10.3390/ijms13033134

By:

Feng-Biao Guo;
Wen Wei

Publication type:

Article

Transcriptional abundance is not the single force driving the evolution of bacterial proteins.

Published in:

BMC Evolutionary Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2148-13-162

By:

Wen Wei;
Tao Zhang;
Dan Lin;
Zu-Jun Yang;
Feng-Biao Guo

Publication type:

Article

Carmna: classification and regression models for nitrogenase activity based on a pretrained large protein language model.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf197

By:

Ye, Anqiang;
Zhang, Ji-Yun;
Xu, Qian;
Guo, Hai-Xia;
Liao, Zhen;
Cui, Hongtu;
Zhang, Dongdong;
Guo, Feng-Biao

Publication type:

Article

Comprehensive review of the identification of essential genes using computational methods: focusing on feature implementation and assessment.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 1, p. 171, doi. 10.1093/bib/bby116

By:

Dong, Chuan;
Jin, Yan-Ting;
Hua, Hong-Li;
Wen, Qing-Feng;
Luo, Sen;
Zheng, Wen-Xin;
Guo, Feng-Biao

Publication type:

Article

Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 3, p. 357, doi. 10.1093/bib/bbw019

By:

Wen Wei;
Feng Gao;
Meng-Ze Du;
Hong-Li Hua;
Ju Wang;
Feng-Biao Guo

Publication type:

Article

Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands.

Published in:

BMC Microbiology, 2017, v. 17, p. 1, doi. 10.1186/s12866-017-0986-6

By:

Feng-Biao Guo;
Lifeng Xiong;
Kai-Yue Zhang;
Chuan Dong;
Fa-Zhan Zhang;
Woo, Patrick C. Y.

Publication type:

Article

SMAL: A Resource of Spontaneous Mutation Accumulation Lines.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 5, p. 1302, doi. 10.1093/molbev/msu073

By:

Wei, Wen;
Ning, Lu-Wen;
Ye, Yuan-Nong;
Li, Shi-Jie;
Zhou, Hui-Qi;
Huang, Jian;
Guo, Feng-Biao

Publication type:

Article

Accurate prediction of human essential genes using only nucleotide composition and association information.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1758, doi. 10.1093/bioinformatics/btx055

By:

Feng-Biao Guo;
Chuan Dong;
Hong-Li Hua;
Shuo Liu;
Hao Luo;
Hong-Wan Zhang;
Yan-Ting Jin;
Kai-Yue Zhang

Publication type:

Article

An Approach for Predicting Essential Genes Using Multiple Homology Mapping and Machine Learning Algorithms.

Published in:

BioMed Research International, 2016, v. 2016, p. 1, doi. 10.1155/2016/7639397

By:

Hua, Hong-Li;
Zhang, Fa-Zhan;
Labena, Abraham Alemayehu;
Dong, Chuan;
Jin, Yan-Ting;
Guo, Feng-Biao

Publication type:

Article

Pangenome Evidence for Higher Codon Usage Bias and Stronger Translational Selection in Core Genes of Escherichia coli.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01180

By:

Shixiang Sun;
Jingfa Xiao;
Huiyong Zhang;
Zhang Zhang;
Bin-Guang Ma;
Feng-Biao Guo

Publication type:

Article

Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01137

By:

Teng, Jade L. L.;
Ying Tang;
Yi Huang;
Feng-Biao Guo;
Wen Wei;
Chen, Jonathan H. K.;
Wong, Samson S. Y.;
Lau, Susanna K. P.;
Woo, Patrick C. Y.

Publication type:

Article

Analysis of nucleotide distribution in the genome of Streptomyces coelicolor A3(2) using the Z curve method

Published in:

FEBS Letters, 2003, v. 540, n. 1-3, p. 188, doi. 10.1016/S0014-5793(03)00263-1

By:

Ou, Hong-Yu;
Guo, Feng-Biao;
Zhang, Chun-Ting

Publication type:

Article

SSER: Species specific essential reactions database.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0426-0

By:

Labena, Abraham A.;
Yuan-Nong Ye;
Chuan Dong;
Fa-Z Zhang;
Feng-Biao Guo

Publication type:

Article

CEG: a database of essential gene clusters.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-769

By:

Yuan-Nong Ye;
Zhi-Gang Hua;
Jian Huang;
Rao, Nini;
Feng-Biao Guo

Publication type:

Article

PhD7FASTER: PREDICTING CLONES PROPAGATING FASTER FROM THE Ph.D.-7 PHAGE DISPLAY PEPTIDE LIBRARY.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 1, p. -1, doi. 10.1142/S021972001450005X

By:

RU, BEIBEI;
'T HOEN, PETER A. C.;
NIE, FULEI;
LIN, HAO;
GUO, FENG-BIAO;
HUANG, JIAN

Publication type:

Article

Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D393, doi. 10.1093/nar/gkx835

By:

Dong, Chuan;
Hao, Ge-Fei;
Hua, Hong-Li;
Liu, Shuo;
Labena, Abraham Alemayehu;
Chai, Guoshi;
Huang, Jian;
Rao, Nini;
Guo, Feng-Biao

Publication type:

Article

ACFIS: a web server for fragment-based drug discovery.

Published in:

Nucleic Acids Research, 2016, v. 44, n. W1, p. W550, doi. 10.1093/nar/gkw393

By:

Ge-Fei Hao;
Wen Jiang;
Yuan-Nong Ye;
Feng-Xu Wu;
Xiao-Lei Zhu;
Feng-Biao Guo;
Guang-Fu Yang

Publication type:

Article

BDB: biopanning data bank.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D1127, doi. 10.1093/nar/gkv1100

By:

Bifang He;
Guoshi Chai;
Yaocong Duan;
Zhiqiang Yan;
Liuyang Qiu;
Huixiong Zhang;
Zechun Liu;
Qiang He;
Ke Han;
Beibei Ru;
Feng-Biao Guo;
Hui Ding;
Hao Lin;
Xianlong Wang;
Nini Rao;
Peng Zhou;
Jian Huang

Publication type:

Article

ZCURVE 3.0: identify prokaryotic genes with higher accuracy as well as automatically and accurately select essential genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W85, doi. 10.1093/nar/gkv491

By:

Zhi-Gang Hua;
Yan Lin;
Ya-Zhou Yuan;
De-Chang Yang;
Wen Wei;
Feng-Biao Guo

Publication type:

Article

Co-adaption of tRNA gene copy number and amino acid usage influences translation rates in three life domains.

Published in:

DNA Research, 2017, v. 24, n. 6, p. 623, doi. 10.1093/dnares/dsx030

By:

Meng-Ze Du;
Wen Wei;
Lei Qin;
Shuo Liu;
An-Ying Zhang;
Yong Zhang;
Hong Zhou;
Feng-Biao Guo

Publication type:

Article

Re-Annotation of Protein-Coding Genes in 10 Complete Genomes of Neisseriaceae Family by Combining Similarity-Based and Composition-Based Methods.

Published in:

DNA Research, 2013, v. 20, n. 3, p. 273, doi. 10.1093/dnares/dst009

By:

Guo, Feng-Biao;
Xiong, Lifeng;
Teng, Jade L. L.;
Yuen, Kwok-Yung;
Lau, Susanna K. P.;
Woo, Patrick C. Y.

Publication type:

Article

Universal Pattern and Diverse Strengths of Successive Synonymous Codon Bias in Three Domains of Life, Particularly Among Prokaryotic Genomes.

Published in:

DNA Research, 2012, v. 19, n. 6, p. 477, doi. 10.1093/dnares/dss027

By:

Guo, Feng-Biao;
Ye, Yuan-Nong;
Zhao, Hai-Long;
Lin, Dan;
Wei, Wen

Publication type:

Article

Codon Usages of Genes on Chromosome, and Surprisingly, Genes in Plasmid are Primarily Affected by Strand-specific Mutational Biases in Lawsonia intracellularis.

Published in:

DNA Research, 2009, v. 16, n. 2, p. 91, doi. 10.1093/dnares/dsp001

By:

Guo, Feng-Biao;
Yuan, Jian-Bo

Publication type:

Article

Gene Recognition Based on Nucleotide Distribution of ORFs in a Hyper-Thermophilic Crenarchaeon, Aeropyrum Pernix K1.

Published in:

DNA Research, 2004, v. 11, n. 6, p. 361, doi. 10.1093/dnares/11.6.361

By:

Guo, Feng-Biao;
Wang, Ju;
Zhang, Chun-Ting

Publication type:

Article

Reconstruction of the genome-scale metabolic network model of Sinorhizobium fredii CCBAU45436 for free-living and symbiotic states.

Published in:

Frontiers in Bioengineering & Biotechnology, 2024, p. 1, doi. 10.3389/fbioe.2024.1377334

By:

Anqiang Ye;
Jian-Ning Shen;
Yong Li;
Xiang Lian;
Bin-Guang Ma;
Feng-Biao Guo

Publication type:

Article

Metabolic pathway databases and model repositories.

Published in:

Quantitative Biology, 2018, v. 6, n. 1, p. 30, doi. 10.1007/s40484-017-0108-3

By:

Labena, Abraham A.;
Gao, Yi-Zhou;
Dong, Chuan;
Hua, Hong-li;
Guo, Feng-Biao

Publication type:

Article

The 7th National Conference on Bioinformatics and Systems Biology of China.

Published in:

2017

By:

Sun, Zhirong;
Hua, Kui;
Zhang, Xuegong;
Guo, Feng-Biao;
Huang, Jian

Publication type:

Report

Geptop 2.0: An Updated, More Precise, and Faster Geptop Server for Identification of Prokaryotic Essential Genes.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01236

By:

Wen, Qing-Feng;
Liu, Shuo;
Dong, Chuan;
Guo, Hai-Xia;
Gao, Yi-Zhou;
Guo, Feng-Biao

Publication type:

Article

Vgas: A Viral Genome Annotation System.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00184

By:

Zhang, Kai-Yue;
Gao, Yi-Zhou;
Du, Meng-Ze;
Liu, Shuo;
Dong, Chuan;
Guo, Feng-Biao

Publication type:

Article

Anti-CRISPRdb v2.2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins.

Published in:

Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac010

By:

Dong, Chuan;
Wang, Xin;
Ma, Cong;
Zeng, Zhi;
Pu, Dong-Kai;
Liu, Shuo;
Wu, Candy-S;
Chen, Shixin;
Deng, Zixin;
Guo, Feng-Biao

Publication type:

Article

CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa112

By:

Liu, Shuo;
Wang, Shu-Xuan;
Liu, Wei;
Wang, Chen;
Zhang, Fa-Zhan;
Ye, Yuan-Nong;
Wu, Candy-S;
Zheng, Wen-Xin;
Rao, Nini;
Guo, Feng-Biao

Publication type:

Article

IFIM: a database of integrated fitness information for microbial genes.

Published in:

Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau052

By:

Wen Wei;
Yuan-Nong Ye;
Sen Luo;
Yan-Yan Deng;
Dan Lin;
Feng-Biao Guo

Publication type:

Article

Analysis of the Relationship between Genomic GC Content and Patterns of Base Usage, Codon Usage and Amino Acid Usage in Prokaryotes: Similar GC Content Adopts Similar Compositional Frequencies Regardless of the Phylogenetic Lineages.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107319

By:

Zhou, Hui-Qi;
Ning, Lu-Wen;
Zhang, Hui-Xiong;
Guo, Feng-Biao

Publication type:

Article

Geptop: A Gene Essentiality Prediction Tool for Sequenced Bacterial Genomes Based on Orthology and Phylogeny.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072343

By:

Wei, Wen;
Ning, Lu-Wen;
Ye, Yuan-Nong;
Guo, Feng-Biao

Publication type:

Article

Re-Annotation of Protein-Coding Genes in the Genome of <i>Saccharomyces cerevisiae</i> Based on Support Vector Machines.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0064477

By:

Lin, Dan;
Yin, Xin;
Wang, Xianlong;
Zhou, Peng;
Guo, Feng-Biao

Publication type:

Article

SAROTUP: Scanner and Reporter of Target-Unrelated Peptides.

Published in:

Journal of Biomedicine & Biotechnology, 2010, p. 1, doi. 10.1155/2010/101932

By:

Jian Huang;
Beibei Ru;
Shiyong Li;
Hao Lin;
Feng-Biao Guo

Publication type:

Article

Prediction of subcellular location of mycobacterial protein using feature selection techniques.

Published in:

Molecular Diversity, 2010, v. 14, n. 4, p. 667, doi. 10.1007/s11030-009-9205-1

By:

Lin, Hao;
Ding, Hui;
Guo, Feng-Biao;
Huang, Jian

Publication type:

Article

Discovery of Drug Candidates for Specific Human Disease Based on Natural Products of Gut Microbes.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.896740

By:

Wang, Cheng-Yu;
Wen, Qing-Feng;
Wang, Qiao-Qiao;
Kuang, Xia;
Dong, Chuan;
Deng, Zi-Xin;
Guo, Feng-Biao

Publication type:

Article