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Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process.
- Published in:
- PLoS Biology, 2016, v. 14, n. 12, p. 1, doi. 10.1371/journal.pbio.1002585
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- Publication type:
- Article
Phase Sensitivity Analysis of Circadian Rhythm Entrainment.
- Published in:
- Journal of Biological Rhythms, 2007, v. 22, n. 2, p. 180, doi. 10.1177/0748730407299194
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- Publication type:
- Article
Effects of Lithium on Age-related Decline in Mitochondrial Turnover and Function in Caenorhabditis elegans.
- Published in:
- Journals of Gerontology Series A: Biological Sciences & Medical Sciences, 2014, v. 69, n. 7, p. 810, doi. 10.1093/gerona/glt210
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- Publication type:
- Article
Effects of Lithium on Age-related Decline in Mitochondrial Turnover and Function in Caenorhabditis elegans.
- Published in:
- 2014
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- Publication type:
- Journal Article
Parameter estimation of dynamic biological network models using integrated fluxes.
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 127, doi. 10.1186/s12918-014-0127-x
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- Publication type:
- Article
Incremental parameter estimation of kinetic metabolic network models.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-142
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- Publication type:
- Article
Understanding dynamics using sensitivity analysis: caveat and solution.
- Published in:
- BMC Systems Biology, 2011, v. 5, n. 1, p. 41, doi. 10.1186/1752-0509-5-41
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- Publication type:
- Article
Divergent Learning-Related Transcriptional States of Cortical Glutamatergic Neurons.
- Published in:
- Journal of Neuroscience, 2024, v. 44, n. 10, p. 1, doi. 10.1523/JNEUROSCI.0302-23.2023
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- Publication type:
- Article
TRaCE+: Ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1137-z
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- Publication type:
- Article
Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 6, p. 1, doi. 10.1093/nar/gkx1314
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- Publication type:
- Article
Are mutagenic non D-loop direct repeat motifs in mitochondrial DNA under a negative selection pressure?
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 8, p. 4098, doi. 10.1093/nar/gkv299
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- Publication type:
- Article
Maximizing signal-to-noise ratio in the random mutation capture assay.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 5, p. e35, doi. 10.1093/nar/gkr1221
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- Publication type:
- Article
Parallel High-Resolution Finite Volume Simulation of Particulate Processes.
- Published in:
- AIChE Journal, 2008, v. 54, n. 6, p. 1449, doi. 10.1002/aic.11484
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- Publication type:
- Article
High Resolution Algorithms for Multidimensional Population Balance Equations.
- Published in:
- AIChE Journal, 2004, v. 50, n. 11, p. 2738, doi. 10.1002/aic.10228
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- Publication type:
- Article
Is mitochondrial DNA turnover slower than commonly assumed?
- Published in:
- Biogerontology, 2012, v. 13, n. 5, p. 557, doi. 10.1007/s10522-012-9390-7
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- Publication type:
- Article
GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology.
- Published in:
- Bioinformatics, 2022, v. 38, n. 24, p. 5413, doi. 10.1093/bioinformatics/btac704
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- Publication type:
- Article
Ensemble Inference and Inferability of Gene Regulatory Networks.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0103812
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- Publication type:
- Article
Assessment of Network Inference Methods: How to Cope with an Underdetermined Problem.
- Published in:
- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090481
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- Publication type:
- Article
Mathematical Modeling of the Role of Mitochondrial Fusion and Fission in Mitochondrial DNA Maintenance.
- Published in:
- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0076230
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- Publication type:
- Article
Role of Direct Repeat and Stem-Loop Motifs in mtDNA Deletions: Cause or Coincidence?
- Published in:
- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035271
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- Publication type:
- Article
FARCI: Fast and Robust Connectome Inference.
- Published in:
- Brain Sciences (2076-3425), 2021, v. 11, n. 12, p. 1556, doi. 10.3390/brainsci11121556
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- Publication type:
- Article
Global parameter estimation methods forstochastic biochemical systems.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 414, doi. 10.1186/1471-2105-11-414
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- Publication type:
- Article
Iterative approach to model identification of biological networks.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 155, doi. 10.1186/1471-2105-6-155
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- Publication type:
- Article
ΔFBA—Predicting metabolic flux alterations using genome-scale metabolic models and differential transcriptomic data.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009589
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- Publication type:
- Article
Introduction to Editorial Board Member: Professor Francis J. Doyle III.
- Published in:
- 2017
- By:
- Publication type:
- Editorial
Immobilized NRG1 Accelerates Neural Crest like Cell Differentiation Toward Functional Schwann Cells Through Sustained Erk1/2 Activation and YAP/TAZ Nuclear Translocation.
- Published in:
- Advanced Science, 2024, v. 11, n. 33, p. 1, doi. 10.1002/advs.202402607
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- Publication type:
- Article
Stochastic and Age‐Dependent Proteostasis Decline Underlies Heterogeneity in Heat‐Shock Response Dynamics.
- Published in:
- Small, 2021, v. 17, n. 30, p. 1, doi. 10.1002/smll.202102145
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- Publication type:
- Article
Microfluidics: Stochastic and Age‐Dependent Proteostasis Decline Underlies Heterogeneity in Heat‐Shock Response Dynamics (Small 30/2021).
- Published in:
- Small, 2021, v. 17, n. 30, p. 1, doi. 10.1002/smll.202170157
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- Publication type:
- Article
Identification of Kinetic Parameters in Multidimensional Crystallization Processes.
- Published in:
- International Journal of Modern Physics B: Condensed Matter Physics; Statistical Physics; Applied Physics, 2002, v. 16, n. 1/2, p. 367, doi. 10.1142/S0217979202009883
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- Publication type:
- Article
Context-Dependent Role of Mitochondrial Fusion-Fission in Clonal Expansion of mtDNA Mutations.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004183
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- Publication type:
- Article
Stochastic Drift in Mitochondrial DNA Point Mutations: A Novel Perspective Ex Silico.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000572
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- Publication type:
- Article
CrossTx: Cross-Cell-Line Transcriptomic Signature Predictions.
- Published in:
- Processes, 2024, v. 12, n. 2, p. 332, doi. 10.3390/pr12020332
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- Publication type:
- Article
Special Issue on "Biological Networks".
- Published in:
- 2018
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- Publication type:
- Editorial
Glycosylation Flux Analysis of Immunoglobulin G in Chinese Hamster Ovary Perfusion Cell Culture.
- Published in:
- Processes, 2018, v. 6, n. 10, p. 176, doi. 10.3390/pr6100176
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- Publication type:
- Article
Elucidating Cellular Population Dynamics by Molecular Density Function Perturbations.
- Published in:
- Processes, 2018, v. 6, n. 2, p. 9, doi. 10.3390/pr6020009
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- Publication type:
- Article
Multi-Objective Optimization of Experiments Using Curvature and Fisher Information Matrix.
- Published in:
- Processes, 2017, v. 5, n. 4, p. 63, doi. 10.3390/pr5040063
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- Publication type:
- Article
Global genome decompaction leads to stochastic activation of gene expression as a first step toward fate commitment in human hematopoietic cells.
- Published in:
- PLoS Biology, 2022, v. 20, n. 10, p. 1, doi. 10.1371/journal.pbio.3001849
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- Publication type:
- Article
Kinetic Modeling of Mammalian Cell Culture Bioprocessing: The Quest to Advance Biomanufacturing.
- Published in:
- Biotechnology Journal, 2018, v. 13, n. 3, p. 1, doi. 10.1002/biot.201700229
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- Publication type:
- Article
SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles.
- Published in:
- Bioinformatics, 2018, v. 34, n. 2, p. 258, doi. 10.1093/bioinformatics/btx575
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- Publication type:
- Article
Inferring gene targets of drugs and chemical compounds from gene expression profiles.
- Published in:
- Bioinformatics, 2016, v. 32, n. 14, p. 2120, doi. 10.1093/bioinformatics/btw148
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- Publication type:
- Article
Optimal design of gene knockout experiments for gene regulatory network inference.
- Published in:
- Bioinformatics, 2016, v. 32, n. 6, p. 875, doi. 10.1093/bioinformatics/btv672
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- Publication type:
- Article
REDEMPTION: reduced dimension ensemble modeling and parameter estimation.
- Published in:
- Bioinformatics, 2015, v. 31, n. 20, p. 3387, doi. 10.1093/bioinformatics/btv365
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- Publication type:
- Article
Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method.
- Published in:
- Bioinformatics, 2011, v. 27, n. 14, p. 1964, doi. 10.1093/bioinformatics/btr293
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- Publication type:
- Article
Clonal expansion of mitochondrial DNA deletions is a private mechanism of aging in long‐lived animals.
- Published in:
- Aging Cell, 2018, v. 17, n. 5, p. 1, doi. 10.1111/acel.12814
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- Publication type:
- Article
DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04046-2
- By:
- Publication type:
- Article