Works by Guigó, Roderic

Results: 88

The histone variant macroH2A is an epigenetic regulator of key developmental genes.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 10, p. 1074, doi. 10.1038/nsmb.1665

By:

Buschbeck, Marcus;
Uribesalgo, Iris;
Wibowo, Indra;
Rué, Pau;
Martin, David;
Gutierrez, Arantxa;
Morey, Lluís;
Guigó, Roderic;
López-Schier, Hernán;
Di Croce, Luciano

Publication type:

Article

Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls.

Published in:

Human Mutation, 2009, v. 30, n. 9, p. E866, doi. 10.1002/humu.21073

By:

Makrythanasis, Periklis;
Kapranov, Philipp;
Bartoloni, Lucia;
Reymond, Alexandre;
Deutsch, Samuel;
Guigó, Roderic;
Denoeud, France;
Drenkow, Jorg;
Rossier, Colette;
Ariani, Francesca;
Capra, Valeria;
Excoffier, Laurent;
Renieri, Alessandra;
Gingeras, Thomas R;
Antonarakis, Stylianos E

Publication type:

Article

Grape RNA-Seq analysis pipeline environment.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 614, doi. 10.1093/bioinformatics/btt016

By:

Knowles, David G.;
Röder, Maik;
Merkel, Angelika;
Guigó, Roderic

Publication type:

Article

Intron-centric estimation of alternative splicing from RNA-seq data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 273, doi. 10.1093/bioinformatics/bts678

By:

Pervouchine, Dmitri D.;
Knowles, David G.;
Guigó, Roderic

Publication type:

Article

BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations.

Published in:

Bioinformatics, 2007, v. 23, n. 14, p. 1831, doi. 10.1093/bioinformatics/btm252

By:

Arnaud Kerhornou;
Roderic Guigó

Publication type:

Article

FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow.

Published in:

Genes, 2021, v. 12, n. 10, p. 1645, doi. 10.3390/genes12101645

By:

Vlasova, Anna;
Hermoso Pulido, Toni;
Camara, Francisco;
Ponomarenko, Julia;
Guigó, Roderic

Publication type:

Article

Genetic Predisposition to Alzheimer's Disease Is Associated with Enlargement of Perivascular Spaces in Centrum Semiovale Region.

Published in:

Genes, 2021, v. 13, n. 6, p. 825, doi. 10.3390/genes12060825

By:

Ciampa, Iacopo;
Operto, Grégory;
Falcon, Carles;
Minguillon, Carolina;
Castro de Moura, Manuel;
Piñeyro, David;
Esteller, Manel;
Molinuevo, Jose Luis;
Guigó, Roderic;
Navarro, Arcadi;
Gispert, Juan Domingo;
Vilor-Tejedor, Natalia

Publication type:

Article

Absence of canonical marks of active chromatin in developmentally regulated genes.

Published in:

Nature Genetics, 2015, v. 47, n. 10, p. 1158, doi. 10.1038/ng.3381

By:

Pérez-Lluch, Sílvia;
Blanco, Enrique;
Tilgner, Hagen;
Curado, Joao;
Ruiz-Romero, Marina;
Corominas, Montserrat;
Guigó, Roderic

Publication type:

Article

PyHIST: A Histological Image Segmentation Tool.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008349

By:

Muñoz-Aguirre, Manuel;
Ntasis, Vasilis F.;
Rojas, Santiago;
Guigó, Roderic

Publication type:

Article

ECCB/JBI 2005.

Published in:

Bioinformatics, 2005, v. 21, p. ii1, doi. 10.1093/bioinformatics/bti1145

By:

Guigó, Roderic;
Morán, Federico;
Valencia, Alfonso;
Abril, Josep F.

Publication type:

Article

Splice site identification by idlBNs.

Published in:

Bioinformatics, 2004, v. 20, n. suppl_1, p. i69, doi. 10.1093/bioinformatics/bth932

By:

Castelo, Robert;
Guigó, Roderic

Publication type:

Article

Splice site identification by idlBNs.

Published in:

Bioinformatics, 2004, v. 20, p. i69, doi. 10.1093/bioinformatics/bth932

By:

Castelo, Robert;
Guigó, Roderic

Publication type:

Article

gff2aplot: Plotting sequence comparisons.

Published in:

Bioinformatics, 2003, v. 19, n. 18, p. 2477, doi. 10.1093/bioinformatics/btg334

By:

Josep F. Abril;
Roderic Guigó;
Thomas Wiehe

Publication type:

Article

gff2ps: visualizing genomic annotations.

Published in:

Bioinformatics, 2000, v. 16, n. 8, p. 743, doi. 10.1093/bioinformatics/16.8.743

By:

Abril, Josep F.;
Guigó, Roderic

Publication type:

Article

ASPic-GeneID: A Lightweight Pipeline for Gene Prediction and Alternative Isoforms Detection.

Published in:

BioMed Research International, 2013, v. 2013, p. 1, doi. 10.1155/2013/502827

By:

Alioto, Tyler;
Picardi, Ernesto;
Guigó, Roderic;
Pesole, Graziano

Publication type:

Article

Review of 'Cap-analysis gene expression'.

Published in:

2011

By:

Merkel, Angelika;
Guigó, Roderic

Publication type:

Book Review

A fast non-parametric test of association for multiple traits.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03076-8

By:

Garrido-Martín, Diego;
Calvo, Miquel;
Reverter, Ferran;
Guigó, Roderic

Publication type:

Article

Fast Computation and Applications of Genome Mappability.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030377

By:

Derrien, Thomas;
Estellé, Jordi;
Sola, Santiago Marco;
Knowles, David G.;
Raineri, Emanuele;
Guigó, Roderic;
Ribeca, Paolo

Publication type:

Article

Relaxation of Selective Constraints Causes Independent Selenoprotein Extinction in Insect Genomes.

Published in:

PLoS ONE, 2008, v. 3, n. 8, p. 1, doi. 10.1371/journal.pone.0002968

By:

Chapple, Charles E.;
Guigó, Roderic

Publication type:

Article

bsAS, an antisense long non-coding RNA, essential for correct wing development through regulation of blistered/DSRF isoform usage.

Published in:

PLoS Genetics, 2020, v. 16, n. 12, p. 1, doi. 10.1371/journal.pgen.1009245

By:

Pérez-Lluch, Sílvia;
Klein, Cecilia C.;
Breschi, Alessandra;
Ruiz-Romero, Marina;
Abad, Amaya;
Palumbo, Emilio;
Bekish, Lyazzat;
Arnan, Carme;
Guigó, Roderic

Publication type:

Article

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006360

By:

Garrido-Martín, Diego;
Palumbo, Emilio;
Guigó, Roderic;
Breschi, Alessandra

Publication type:

Article

Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation.

Published in:

Molecular Ecology, 2015, v. 24, n. 8, p. 1873, doi. 10.1111/mec.13150

By:

Delmore, Kira E.;
Hübner, Sariel;
Kane, Nolan C.;
Schuster, Richard;
Andrew, Rose L.;
Câmara, Francisco;
Guigó, Roderic;
Irwin, Darren E.

Publication type:

Article

The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues.

Published in:

Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-00746-1

By:

Muyas, Francesc;
Zapata, Luis;
Guigó, Roderic;
Ossowski, Stephan

Publication type:

Article

Air pollution has a more deleterious effect on Alzheimer's disease biomarkers in genetic predisposition to larger hippocampal volumes.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 11, p. 1, doi. 10.1002/alz.063146

By:

Vilor‐Tejedor, Natalia;
Genius, Patricia;
Rodríguez‐Fernández, Blanca;
Minguillón, Carolina;
Crous‐Bou, Marta;
Suárez‐Calvet, Marc;
Milà‐Alomà, Marta;
Cirach, Marta;
Nieuwenhuijsen, Mark;
Sunyer, Jordi;
Fauria, Karine;
Kollmorgen, Gwendlyn;
Suridjan, Ivonne;
Wild, Norbert;
Esteller, Manel;
Zetterberg, Henrik;
Blennow, Kaj;
Molinuevo, Jose Luis;
Guigó, Roderic;
Navarro, Arcadi

Publication type:

Article

Genetically predicted Telomere Length and its relationship with Alzheimer's disease and Life Expectancy.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 11, p. 1, doi. 10.1002/alz.062190

By:

Rodríguez‐Fernández, Blanca;
Gispert, Juan Domingo;
Guigó, Roderic;
Navarro, Arcadi;
Vilor‐Tejedor, Natalia;
Crous‐Bou, Marta

Publication type:

Article

Polygenic determinants of White Matter Hyperintensities and sex‐specific genetic profiles in the Alzheimer's continuum.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 5, p. 1, doi. 10.1002/alz.062139

By:

Genius, Patricia;
Rodríguez‐Fernández, Blanca;
Operto, Grégory;
Falcon, Carles;
Minguillón, Carolina;
Fauria, Karine;
Molinuevo, Jose Luis;
Esteller, Manel;
Guigó, Roderic;
Zetterberg, Henrik;
Blennow, Kaj;
Sudre, Carole H;
Suárez‐Calvet, Marc;
Navarro, Arcadi;
Gispert, Juan Domingo;
Vilor‐Tejedor, Natalia

Publication type:

Article

Sex differences in genetic susceptibility of hippocampal subfields: A polygenic association study.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, p. 1, doi. 10.1002/alz.053173

By:

Genius, Patricia;
Arenaza‐Urquijo, Eider M.;
Operto, Greg;
Evans, Tavia E.;
Brugulat‐Serrat, Anna;
Falcon, Carles;
Minguillón, Carolina;
Fauria, Karine;
Adams, Hieab H.H.;
de Moura, Manuel Castro;
Piñeyro, David;
Esteller, Manel;
Guigó, Roderic;
Navarro, Arcadi;
Molinuevo, Jose;
Gispert, Juan Domingo;
Vilor‐Tejedor, Natalia

Publication type:

Article

Perivascular spaces are associated with tau pathophysiology and synaptic dysfunction in early Alzheimer’s continuum.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, p. 1, doi. 10.1002/alz.051799

By:

Vilor‐Tejedor, Natalia;
Ciampa, Iacopo;
Operto, Greg;
Falcon, Carles;
Suarez‐Calvet, Marc;
Crous‐Bou, Marta;
Shekari, Mahnaz;
Arenaza‐Urquijo, Eider M.;
Milà‐Alomà, Marta;
Grau‐Rivera, Oriol;
Minguillón, Carolina;
Kollmorgen, Gwendlyn;
Suridjan, Ivonne;
Zetterberg, Henrik;
Blennow, Kaj;
Guigó, Roderic;
Molinuevo, Jose;
Gispert, Juan Domingo

Publication type:

Article

Polygenic‐wide analysis to assess the impact of genetic risk profiles on brain morphometry in the ALFA study: Early imaging changes in cognitively normal subjects at risk of late onset AD.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2020, v. 16, n. 11, p. 1, doi. 10.1002/alz.042952

By:

Vilor‐Tejedor, Natalia;
Guigó, Roderic;
Operto, Greg;
Crous‐Bou, Marta;
Cacciaglia, Raffaele;
Falcon, Carles;
Arenaza‐Urquijo, Eider M;
Minguillón, Carolina;
Fauria, Karine;
Molinuevo, Jose Luis;
Gispert, Juan Domingo

Publication type:

Article

P1‐132: INFLUENCE OF BDNF VAL66MET POLYMORPHISM ON HIPPOCAMPAL SUBFIELDS: MET CARRIERS DISPLAY GREATER SUBICULUM VOLUMES.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2019, v. 15, p. P286, doi. 10.1016/j.jalz.2019.06.687

By:

Vilor-Tejedor, Natalia;
Operto, Grégory;
Falcon, Carles;
Crous-Bou, Marta;
Garrido-Martín, Diego;
Minguillón, Carolina;
Cacciaglia, Raffaele;
Moran, Sebastian;
Esteller, Manel;
Molinuevo, Jose Luis;
Guigó, Roderic;
Gispert, Juan Domingo

Publication type:

Article

Transcription Factor Map Alignment of Promoter Regions.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 5, p. e49, doi. 10.1371/journal.pcbi.0020049

By:

Blanco, Enrique;
Messeguer, Xavier;
Smith, Temple F.;
Guigó, Roderic

Publication type:

Article

Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features.

Published in:

Scientific Reports, 2017, p. 41544, doi. 10.1038/srep41544

By:

Lanzós, Andrés;
Carlevaro-Fita, Joana;
Mularoni, Loris;
Reverter, Ferran;
Palumbo, Emilio;
Guigó, Roderic;
Johnson, Rory

Publication type:

Article

Brain Transcriptome Sequencing of a Natural Model of Alzheimer's Disease.

Published in:

Frontiers in Aging Neuroscience, 2017, v. 9, p. 1, doi. 10.3389/fnagi.2017.00064

By:

Altimiras, Francisco;
Uszczynska-Ratajczak, Barbara;
Camara, Francisco;
Vlasova, Anna;
Palumbo, Emilio;
Newhouse, Stephen;
Deacon, Robert M. J.;
Farias, Leandro A. E.;
Hurley, Michael J.;
Loyola, David E.;
Vásquez, Rodrigo A.;
Dobson, Richard;
Guigó, Roderic;
Cogram, Patricia

Publication type:

Article

Are splicing mutations the most frequent cause of hereditary disease?

Published in:

FEBS Letters, 2005, v. 579, n. 9, p. 1900, doi. 10.1016/j.febslet.2005.02.047

By:

López-Bigas, Núria;
Audit, Benjamin;
Ouzounis, Christos;
Parra, Genís;
Guigó, Roderic

Publication type:

Article

Hnf1α (MODY3) Controls Tissue-Specific Transcriptional Programs and Exerts Opposed Effects on Cell Growth in Pancreatic Islets and Liver.

Published in:

Molecular & Cellular Biology, 2009, v. 29, n. 11, p. 2945, doi. 10.1128/MCB.01389-08

By:

Servitja, Joan-Marc;
Pignatelli, Miguel;
Maestro, Miguel Ángel;
Cardalda, Carina;
Boj, Sylvia F.;
Lozano, Juanjo;
Blanco, Enrique;
Lafuente, Amàlia;
McCarthy, Mark I.;
Sumoy, Lauro;
Guigó, Roderic;
Ferrer, Jorge

Publication type:

Article

Conserved long-range base pairings are associated with pre-mRNA processing of human genes.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22549-7

By:

Kalmykova, Svetlana;
Kalinina, Marina;
Denisov, Stepan;
Mironov, Alexey;
Skvortsov, Dmitry;
Guigó, Roderic;
Pervouchine, Dmitri

Publication type:

Article

Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20578-2

By:

Garrido-Martín, Diego;
Borsari, Beatrice;
Calvo, Miquel;
Reverter, Ferran;
Guigó, Roderic

Publication type:

Article

Integration of transcription regulation and functional genomic data reveals lncRNA SNHG6's role in hematopoietic differentiation and leukemia.

Published in:

Journal of Biomedical Science, 2024, v. 31, n. 1, p. 1, doi. 10.1186/s12929-024-01015-8

By:

Hazan, Joshua M.;
Amador, Raziel;
Ali-Nasser, Tahleel;
Lahav, Tamar;
Shotan, Stav Roni;
Steinberg, Miryam;
Cohen, Ziv;
Aran, Dvir;
Meiri, David;
Assaraf, Yehuda G.;
Guigó, Roderic;
Bester, Assaf C.

Publication type:

Article

Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs.

Published in:

European Heart Journal, 2015, v. 36, n. 6, p. 353, doi. 10.1093/eurheartj/ehu180

By:

Ounzain, Samir;
Micheletti, Rudi;
Beckmann, Tal;
Schroen, Blanche;
Alexanian, Michael;
Pezzuto, Iole;
Crippa, Stefania;
Nemir, Mohamed;
Sarre, Alexandre;
Johnson, Rory;
Dauvillier, Jérôme;
Burdet, Frédéric;
Ibberson, Mark;
Guigó, Roderic;
Xenarios, Ioannis;
Heymans, Stephane;
Pedrazzini, Thierry

Publication type:

Article

Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution?

Published in:

EMBO Journal, 2001, v. 20, n. 19, p. 5354, doi. 10.1093/emboj/20.19.5354

By:

Betts, Matthew J.;
Guigó, Roderic;
Agarwal, Pankaj;
Russell, Robert B.

Publication type:

Article

DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2086-z

By:

Aparicio-Prat, Estel;
Arnan, Carme;
Sala, Ilaria;
Bosch, Núria;
Guigó, Roderic;
Johnson, Rory

Publication type:

Article

Data sharing ethics toolkit: The Human Cell Atlas.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-54300-3

By:

Kirby, Emily;
Bernier, Alexander;
Guigó, Roderic;
Wold, Barbara;
Arzuaga, Fabiana;
Kusunose, Mayumi;
Zawati, Ma'n;
Knoppers, Bartha M.

Publication type:

Article

Expression of the transcribed ultraconserved region 70 and the related long non‐coding RNA AC092652.2‐202 has prognostic value in Chronic Lymphocytic Leukaemia.

Published in:

British Journal of Haematology, 2019, v. 184, n. 6, p. 1045, doi. 10.1111/bjh.15237

By:

Bomben, Riccardo;
Roisman, Alejandro;
D'Agaro, Tiziana;
Castellano, Giancarlo;
Baumann, Tycho;
Delgado, Julio;
López‐Guillermo, Armando;
Zucchetto, Antonella;
Dal‐Bo, Michele;
Bravin, Vanessa;
Slavutsky, Irma;
Vlasova, Anna;
Guigó, Roderic;
Martin‐Subero, Jose I.;
Chapaprieta, Vicente;
Beekman, Renee;
Martin‐García, David;
Beà, Sílvia;
Salaverria, Itziar;
Aymerich, Marta

Publication type:

Article

Systematic evaluation of spliced alignment programs for RNA-seq data.

Published in:

Nature Methods, 2013, v. 10, n. 12, p. 1185, doi. 10.1038/nmeth.2722

By:

Engström, Pär G;
Steijger, Tamara;
Sipos, Botond;
Grant, Gregory R;
Kahles, André;
Alioto, Tyler;
Behr, Jonas;
Bertone, Paul;
Bohnert, Regina;
Campagna, Davide;
Davis, Carrie A;
Dobin, Alexander;
Gingeras, Thomas R;
Goldman, Nick;
Guigó, Roderic;
Harrow, Jennifer;
Hubbard, Tim J;
Jean, Géraldine;
Kosarev, Peter;
Li, Sheng

Publication type:

Article

The GEM mapper: fast, accurate and versatile alignment by filtration.

Published in:

Nature Methods, 2012, v. 9, n. 12, p. 1185, doi. 10.1038/nmeth.2221

By:

Marco-Sola, Santiago;
Sammeth, Michael;
Guigó, Roderic;
Ribeca, Paolo

Publication type:

Article

EGASP: collaboration through competition to find human genes.

Published in:

Nature Methods, 2005, v. 2, n. 8, p. 575, doi. 10.1038/nmeth0805-575

By:

Guigó, Roderic;
Reese, Martin G.

Publication type:

Article

Genomic and functional conservation of lncRNAs: lessons from flies.

Published in:

Mammalian Genome, 2022, v. 33, n. 2, p. 328, doi. 10.1007/s00335-021-09939-4

By:

Camilleri-Robles, Carlos;
Amador, Raziel;
Klein, Cecilia C.;
Guigó, Roderic;
Corominas, Montserrat;
Ruiz-Romero, Marina

Publication type:

Article

The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 18, p. 9785, doi. 10.1093/nar/gkad685

By:

Chaturvedi, Anurag;
Li, Xiaojing;
Dhandapani, Vignesh;
Marshall, Hollie;
Kissane, Stephen;
Cuenca-Cambronero, Maria;
Asole, Giovanni;
Calvet, Ferriol;
Ruiz-Romero, Marina;
Marangio, Paolo;
Guigó, Roderic;
Rago, Daria;
Mirbahai, Leda;
Eastwood, Niamh;
Colbourne, John K;
Zhou, Jiarui;
Mallon, Eamonn;
Orsini, Luisa

Publication type:

Article

Dynamic changes in intron retention are tightly associated with regulation of splicing factors and proliferative activity during B-cell development.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1327, doi. 10.1093/nar/gkz1180

By:

Ullrich, Sebastian;
Guigó, Roderic

Publication type:

Article

Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 5293, doi. 10.1093/nar/gkz193

By:

Pervouchine, Dmitri;
Popov, Yaroslav;
Berry, Andy;
Borsari, Beatrice;
Frankish, Adam;
Guigó, Roderic

Publication type:

Article