Works matching AU Guffanti, Alessandro

Results: 28

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-163

By:

Guffanti, Alessandro;
Iacono, Michele;
Pelucchi, Paride;
Namshin Kim;
Soldà, Giulia;
Croft, Larry J.;
Taft, Ryan J.;
Rizzi, Ermanno;
Askarian-Amiri, Marjan;
Bonnal, Raoul J.;
Callari, Maurizio;
Mignone, Flavio;
Pesole, Graziano;
Bertalot, Giovanni;
Bernardi, Luigi Rossi;
Albertini, Alberto;
Lee, Christopher;
Mattick, John S.;
Zucchi, Ileana;
De Bellis, Gianluca

Publication type:

Article

Non-random retention of protein-coding overlapping genes in Metazoa.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-174

By:

Soldà, Giulia;
Suyama, Mikita;
Pelucchi, Paride;
Boi, Silvia;
Guffanti, Alessandro;
Rizzi, Ermanno;
Bork, Peer;
Tenchini, Maria Luisa;
Ciccarelli, Francesca D.

Publication type:

Article

Deep Sequencing the microRNA profile in rhabdomyosarcoma reveals down-regulation of miR-378 family members.

Published in:

BMC Cancer, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2407-14-880

By:

Megiorni, Francesca;
Cialfi, Samantha;
McDowell, Heather P.;
Felsani, Armando;
Camero, Simona;
Guffanti, Alessandro;
Pizer, Barry;
Clerico, Anna;
De Grazia, Alessandra;
Pizzuti, Antonio;
Moles, Anna;
Dominici, Carlo

Publication type:

Article

Deep Sequencing the microRNA profile in rhabdomyosarcoma reveals down-regulation of miR-378 family members.

Published in:

BMC Cancer, 2014, v. 14, p. 1, doi. 10.1186/1471-2407-14-880

By:

Megiorni, Francesca;
Cialfi, Samantha;
McDowell, Heather P.;
Felsani, Armando;
Camero, Simona;
Guffanti, Alessandro;
Pizer, Barry;
Clerico, Anna;
De Grazia, Alessandra;
Pizzuti, Antonio;
Moles, Anna;
Dominici, Carlo

Publication type:

Article

AntiHunter: searching BLAST output for EST antisense transcripts.

Published in:

Bioinformatics, 2004, v. 20, n. 4, p. 583, doi. 10.1093/bioinformatics/btg460

By:

Giovanni Lavorgna;
Luca Sessa;
Alessandro Guffanti;
Lelio Lassandro;
Giorgio Casari

Publication type:

Article

TargetFinder: searching annotated sequence databases for target genes of transcription factors.

Published in:

Bioinformatics, 1999, v. 15, n. 2, p. 172, doi. 10.1093/bioinformatics/15.2.172

By:

Lavorgna, Giovanni;
Guffanti, Alessandro;
Borsani, Giuseppe;
Ballabio, Andrea;
Boncinelli, Edoardo

Publication type:

Article

Transient Exposure to Low Levels of Insecticide Affects Metabolic Networks of Honeybee Larvae.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068191

By:

Derecka, Kamila;
Blythe, Martin J.;
Malla, Sunir;
Genereux, Diane P.;
Guffanti, Alessandro;
Pavan, Paolo;
Moles, Anna;
Snart, Charles;
Ryder, Thomas;
Ortori, Catharine A.;
Barrett, David A.;
Schuster, Eugene;
Stöger, Reinhard

Publication type:

Article

Estrogen-Dependent Dynamic Profile of eNOS-DNA Associations in Prostate Cancer

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062522

By:

Nanni, Simona;
Aiello, Aurora;
Re, Agnese;
Guffanti, Alessandro;
Benvenuti, Valentina;
Colussi, Claudia;
Castro-Vega, Luis Jaime;
Felsani, Armando;
Londono-Vallejo, Arturo;
Capogrossi, Maurizio C.;
Bacchetti, Silvia;
Gaetano, Carlo;
Pontecorvi, Alfredo;
Farsetti, Antonella

Publication type:

Article

Mutations in the FOG2/ZFPM2 gene are associated with anomalies of human testis determination.

Published in:

Human Molecular Genetics, 2014, v. 23, n. 14, p. 3657, doi. 10.1093/hmg/ddu074

By:

Bashamboo, Anu;
Brauner, Raja;
Bignon-Topalovic, Joelle;
Lortat-Jacob, Stephen;
Karageorgou, Vasiliki;
Lourenco, Diana;
Guffanti, Alessandro;
McElreavey, Ken

Publication type:

Article

BITS 2015: the annual meeting of the Italian Society of Bioinformatics.

Published in:

2016

By:

Milanesi, Luciano;
Guffanti, Alessandro;
Mauri, Giancarlo;
Masseroli, Marco

Publication type:

Proceeding

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S9-S1

By:

Facchiano, Angelo;
Angelini, Claudia;
Bosotti, Roberta;
Guffanti, Alessandro;
Marabotti, Anna;
Marangoni, Roberto;
Pascarella, Stefano;
Romano, Paolo;
Zanzoni, Andreas;
Helmer-Citterich, Manuela

Publication type:

Article

Histone Modifications in a Mouse Model of Early Adversities and Panic Disorder: Role for Asic1 and Neurodevelopmental Genes.

Published in:

Scientific Reports, 2016, p. 25131, doi. 10.1038/srep25131

By:

Cittaro, Davide;
Lampis, Valentina;
Luchetti, Alessandra;
Coccurello, Roberto;
Guffanti, Alessandro;
Felsani, Armando;
Moles, Anna;
Stupka, Elia;
D' Amato, Francesca R.;
Battaglia, Marco

Publication type:

Article

An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.

Published in:

Briefings in Bioinformatics, 2009, v. 10, n. 5, p. 475, doi. 10.1093/bib/bbp022

By:

Soldà, Giulia;
Makunin, Igor V .;
Sezerman, Osman U.;
Corradin, Alberto;
Corti, Giorgio;
Guffanti, Alessandro

Publication type:

Article

The tripartite motif family identifies cell compartments.

Published in:

EMBO Journal, 2001, v. 20, n. 9, p. 2140, doi. 10.1093/emboj/20.9.2140

By:

Reymond, Alexandre;
Meroni, Germana;
Fantozzi, Anna;
Merla, Giuseppe;
Cairo, Stefano;
Luzi, Lucilla;
Riganelli, Daniela;
Zanaria, Elena;
Messali, Silvia;
Cainarca, Silvia;
Guffanti, Alessandro;
Minucci, Saverio;
Pelicci, Pier Giuseppe;
Ballabio, Andrea

Publication type:

Article

Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson's Leukocytes Identified by RNA Sequencing.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003517

By:

Soreq, Lilach;
Guffanti, Alessandro;
Salomonis, Nathan;
Simchovitz, Alon;
Israel, Zvi;
Bergman, Hagai;
Soreq, Hermona

Publication type:

Article

A sketch of known and novel MYCN-associated miRNA networks in neuroblastoma.

Published in:

Oncology Reports, 2017, v. 38, n. 1, p. 3, doi. 10.3892/or.2017.5701

By:

MEGIORNI, FRANCESCA;
COLAIACOVO, MORENO;
CIALFI, SAMANTHA;
MCDOWELL, HEATHER P.;
GUFFANTI, ALESSANDRO;
CAMERO, SIMONA;
FELSANI, ARMANDO;
LOSTY, PAUL D.;
PIZER, BARRY;
SHUKLA, RAJEEV;
CAPPELLI, CARLO;
FERRARA, EVA;
PIZZUTI, ANTONIO;
MOLES, ANNA;
DOMINICI, CARLO

Publication type:

Article

A global analysis of Caenorhabditis elegans operons.

Published in:

Nature, 2002, v. 417, n. 6891, p. 851, doi. 10.1038/nature00831

By:

Blumenthal, Thomas;
Evans, Donald;
Link, Christopher D.;
Guffanti, Alessandro;
Lawson, Daniel;
Thierry-Mieg, Jean;
Thierry-Mieg, Danielle;
Wei Lu Chiu;
Duke, Kyle;
Kiraly, Moni;
Kim, Stuart K.

Publication type:

Article

Impact of different ChIP-Seq protocols on DNA integrity and quality of bioinformatics analysis results.

Published in:

Briefings in Functional Genomics, 2015, v. 14, n. 2, p. 156, doi. 10.1093/bfgp/elu001

By:

Felsani, Armando;
Gudmundsson, Bjarki;
Brini, Elena;
Nanni, Simona;
Moles, Anna;
Thormar, Hans Guttormur;
Estibeiro, Peter;
Gaetano, Carlo;
Capogrossi, Maurizio;
Farsetti, Antonella;
Jonsson, Jon Johannes;
Guffanti, Alessandro

Publication type:

Article

MicroRNA expression in HTLV-1 infection and pathogenesis.

Published in:

2011

By:

D'Agostino, Donna M.;
Ruggero, Katia;
Biasiolo, Marta;
Bortoluzzi, Stefania;
Pise-Masison, Cynthia A.;
Corradin, Alberto;
Basso, Katia;
Guffanti, Alessandro;
De Bellis, Gianluca;
Corti, Giorgio;
Zanovello, Paola;
Bronte, Vincenzo;
Ciminale, Vincenzo

Publication type:

Abstract

DG-CST (Disease Gene Conserved Sequence Tags), a database of human–mouse conserved elements associated to disease genes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d505

By:

Boccia, Angelo;
Petrillo, Mauro;
di Bernardo, Diego;
Guffanti, Alessandro;
Mignone, Flavio;
Confalonieri, Stefano;
Luzi, Lucilla;
Pesole, Graziano;
Paolella, Giovanni;
Ballabio, Andrea;
Banfi, Sandro

Publication type:

Article

Emerging bioinformatics approaches for analysis of NGS-derived coding and non-coding RNAs in neurodegenerative diseases.

Published in:

Frontiers in Cellular Neuroscience, 2014, v. 8, p. 1, doi. 10.3389/fncel.2014.00089

By:

Guffanti, Alessandro;
Simchovitz, Alon;
Soreq, Hermona

Publication type:

Article

Establishment and Characterization of a Cell Line (S-RMS1) Derived from an Infantile Spindle Cell Rhabdomyosarcoma with SRF-NCOA2 Fusion Transcript.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 11, p. 5484, doi. 10.3390/ijms22115484

By:

Colletti, Marta;
Galardi, Angela;
Miele, Evelina;
Di Paolo, Virginia;
Russo, Ida;
De Stefanis, Cristiano;
De Vito, Rita;
Rinelli, Martina;
Ciolfi, Andrea;
De Angelis, Biagio;
Zin, Angelica;
Guffanti, Alessandro;
Digilio, Maria Cristina;
Novelli, Antonio;
Alaggio, Rita;
Milano, Giuseppe Maria;
Di Giannatale, Angela

Publication type:

Article

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.

Published in:

BMC Bioinformatics, 2007, v. 8, p. S17, doi. 10.1186/1471-2105-8-S1-S17

By:

Rambaldi, Davide;
Felice, Barbara;
Praz, Viviane;
Bucher, Philip;
Cittaro, Davide;
Guffanti, Alessandro

Publication type:

Article

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.

Published in:

BMC Bioinformatics, 2005, v. 6, p. 1, doi. 10.1186/1471-2105-6-S4-S22

By:

Rambaldi, Davide;
Guffanti, Alessandro;
Morandi, Paolo;
Cassata, Giuseppe

Publication type:

Article

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.

Published in:

BMC Bioinformatics, 2005, v. 6, p. S1, doi. 10.1186/1471-2105-6-S4-S1

By:

Helmer-Citterich, Manuela;
Casadio, Rita;
Guffanti, Alessandro;
Mauri, Giancarlo;
Milanesi, Luciano;
Pesole, Graziano;
Valle, Giorgio;
Saccone, Cecilia

Publication type:

Article

Identification of alternatively spliced dab1 isoforms in zebrafish.

Published in:

Development Genes & Evolution, 2006, v. 216, n. 6, p. 291, doi. 10.1007/s00427-005-0052-5

By:

Costagli, Arianna;
Felice, Barbara;
Guffanti, Alessandro;
Wilson, Stephen W.;
Mione, Marina

Publication type:

Article

RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W262, doi. 10.1093/nar/gkq391

By:

Merelli, Ivan;
Guffanti, Alessandro;
Fabbri, Marco;
Cocito, Andrea;
Furia, Laura;
Grazini, Ursula;
Bonnal, Raoul J.;
Milanesi, Luciano;
McBlane, Fraser

Publication type:

Article

Role of retinoic acid receptor overexpression in sensitivity to fenretinide and tumorigenicity of human ovarian carcinoma cells.

Published in:

International Journal of Cancer, 1999, v. 81, n. 5, p. 829, doi. 10.1002/(SICI)1097-0215(19990531)81:5<829::AID-IJC26>3.0.CO;2-3

By:

Pergolizzi,, Rossana;
Appierto,, Valentina;
Crosti,, Mariacristina;
Cavadini,, Elena;
Cleris,, Loredana;
Guffanti, Alessandro;
Formelli, Franca

Publication type:

Article