Works matching AU Guanming Wu

Results: 36

VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1141030

By:

Brunson, Timothy;
Sanati, Nasim;
Huffman, Anthony;
Maria Masci, Anna;
Jie Zheng;
Cooke, Michael F.;
Conley, Patrick;
Yongqun He;
Guanming Wu

Publication type:

Article

VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.

Published in:

Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1141030

By:

Brunson, Timothy;
Sanati, Nasim;
Huffman, Anthony;
Masci, Anna Maria;
Jie Zheng;
Cooke, Michael F.;
Conley, Patrick;
Yongqun He;
Guanming Wu

Publication type:

Article

Detection of neoplastic-immune hybrid cells with metastatic properties in uveal melanoma.

Published in:

Biomarker Research, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40364-024-00609-6

By:

Anderson, Ashley N.;
Conley, Patrick;
Klocke, Christopher D.;
Sengupta, Sidharth K.;
Pang, Amara;
Farley, Hannah C.;
Gillingham, Abigail R.;
Dawson, Aubrey D.;
Fan, Yichen;
Jones, Jocelyn A.;
Gibbs, Summer L.;
Skalet, Alison H.;
Wu, Guanming;
Wong, Melissa H.

Publication type:

Article

Reactome: a database of reactions, pathways and biological processes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D691, doi. 10.1093/nar/gkq1018

By:

Croft, David;
O’Kelly, Gavin;
Wu, Guanming;
Haw, Robin;
Gillespie, Marc;
Matthews, Lisa;
Caudy, Michael;
Garapati, Phani;
Gopinath, Gopal;
Jassal, Bijay;
Jupe, Steven;
Kalatskaya, Irina;
Mahajan, Shahana;
May, Bruce;
Ndegwa, Nelson;
Schmidt, Esther;
Shamovsky, Veronica;
Yung, Christina;
Birney, Ewan;
Hermjakob, Henning

Publication type:

Article

Reactome knowledgebase of human biological pathways and processes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D619, doi. 10.1093/nar/gkn863

By:

Matthews, Lisa;
Gopinath, Gopal;
Gillespie, Marc;
Caudy, Michael;
Croft, David;
de Bono, Bernard;
Garapati, Phani;
Hemish, Jill;
Hermjakob, Henning;
Jassal, Bijay;
Kanapin, Alex;
Lewis, Suzanna;
Mahajan, Shahana;
May, Bruce;
Schmidt, Esther;
Vastrik, Imre;
Wu, Guanming;
Birney, Ewan;
Stein, Lincoln;
D’Eustachio, Peter

Publication type:

Article

Corrigendum: Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.

Published in:

2011

By:

Voight, Benjamin F.;
Scott, Laura J.;
Steinthorsdottir, Valgerdur;
Morris, Andrew P.;
Dina, Christian;
Welch, Ryan P.;
Zeggini, Eleftheria;
Huth, Cornelia;
Aulchenko, Yurii S.;
Thorleifsson, Gudmar;
McCulloch, Laura J.;
Ferreira, Teresa;
Grallert, Harald;
Amin, Najaf;
Wu, Guanming;
Willer, Cristen J.;
Raychaudhuri, Soumya;
McCarroll, Steve A.;
Langenberg, Claudia;
Hofmann, Oliver M.

Publication type:

Correction Notice

Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.

Published in:

Nature Genetics, 2010, v. 42, n. 7, p. 579, doi. 10.1038/ng.609

By:

Voight, Benjamin F;
Scott, Laura J;
Steinthorsdottir, Valgerdur;
Morris, Andrew P;
Dina, Christian;
Welch, Ryan P;
Zeggini, Eleftheria;
Huth, Cornelia;
Aulchenko, Yurii S;
Thorleifsson, Gudmar;
McCulloch, Laura J;
Ferreira, Teresa;
Grallert, Harald;
Amin, Najaf;
Wu, Guanming;
Willer, Cristen J;
Raychaudhuri, Soumya;
McCarroll, Steve A;
Langenberg, Claudia;
Hofmann, Oliver M

Publication type:

Article

VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3194-6

By:

Ong, Edison;
Sun, Peter;
Berke, Kimberly;
Zheng, Jie;
Wu, Guanming;
He, Yongqun

Publication type:

Article

Myosin V attachment to cargo requires the tight association of two Functional subdomains.

Published in:

Journal of Cell Biology, 2005, v. 168, n. 3, p. 359, doi. 10.1083/jcb.200407146

By:

Pashkova, Natasha;
Catlett, Natalie L.;
Novak, Jennifer L.;
Guanming Wu;
Lu, Renne;
Cohen, Robert E.;
Weisman, Lois S.

Publication type:

Article

Using Reactome to build an autophagy mechanism knowledgebase.

Published in:

Autophagy, 2021, v. 17, n. 6, p. 1543, doi. 10.1080/15548627.2020.1761659

By:

Varusai, Thawfeek Mohamed;
Jupe, Steven;
Sevilla, Cristoffer;
Matthews, Lisa;
Gillespie, Marc;
Stein, Lincoln;
Wu, Guanming;
D'Eustachio, Peter;
Metzakopian, Emmanouil;
Hermjakob, Henning

Publication type:

Article

Between pathways and networks lies context: implications for precision medicine.

Published in:

Science Progress, 2015, v. 98, n. 3, p. 253, doi. 10.3184/003685015X14368898634462

By:

Laderas, Ted;
Wu, Guanming;
Mcweeney, Shannon

Publication type:

Article

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome.

Published in:

Cancers, 2012, v. 4, n. 4, p. 1180, doi. 10.3390/cancers4041180

By:

Milacic, Marija;
Haw, Robin;
Rothfels, Karen;
Wu, Guanming;
Croft, David;
Hermjakob, Henning;
D'Eustachio, Peter;
Stein, Lincoln

Publication type:

Article

Systematic MicroRNA Analysis Identifies ATP6V0C as an Essential Host Factor for Human Cytomegalovirus Replication.

Published in:

PLoS Pathogens, 2013, v. 9, n. 12, p. 1, doi. 10.1371/journal.ppat.1003820

By:

Pavelin, Jon;
Reynolds, Natalie;
Chiweshe, Stephen;
Wu, Guanming;
Tiribassi, Rebecca;
Grey, Finn

Publication type:

Article

A Viral microRNA Down-Regulates Multiple Cell Cycle Genes through mRNA 5'UTRs.

Published in:

PLoS Pathogens, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.ppat.1000967

By:

Grey, Finn;
Tirabassi, Rebecca;
Meyers, Heather;
Guanming Wu;
McWeeney, Shannon;
Hook, Lauren;
Nelson, Jay A.

Publication type:

Article

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature.

Published in:

Journal of Biomedical Semantics, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s13326-021-00250-4

By:

Huffman, Anthony;
Masci, Anna Maria;
Zheng, Jie;
Sanati, Nasim;
Brunson, Timothy;
Wu, Guanming;
He, Yongqun

Publication type:

Article

Reactome from a WikiPathways Perspective.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004941

By:

Bohler, Anwesha;
Wu, Guanming;
Kutmon, Martina;
Pradhana, Leontius Adhika;
Coort, Susan L.;
Hanspers, Kristina;
Haw, Robin;
Pico, Alexander R.;
Evelo, Chris T.

Publication type:

Article

VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.639491

By:

Berke, Kimberly;
Sun, Peter;
Ong, Edison;
Sanati, Nasim;
Huffman, Anthony;
Brunson, Timothy;
Loney, Fred;
Ostrow, Joseph;
Racz, Rebecca;
Zhao, Bin;
Xiang, Zuoshuang;
Masci, Anna Maria;
Zheng, Jie;
Wu, Guanming;
He, Yongqun

Publication type:

Article

The reactome pathway knowledgebase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. D1, p. D498, doi. 10.1093/nar/gkz1031

By:

Jassal, Bijay;
Matthews, Lisa;
Viteri, Guilherme;
Gong, Chuqiao;
Lorente, Pascual;
Fabregat, Antonio;
Sidiropoulos, Konstantinos;
Cook, Justin;
Gillespie, Marc;
Haw, Robin;
Loney, Fred;
May, Bruce;
Milacic, Marija;
Rothfels, Karen;
Sevilla, Cristoffer;
Shamovsky, Veronica;
Shorser, Solomon;
Varusai, Thawfeek;
Weiser, Joel;
Wu, Guanming

Publication type:

Article

Plant Reactome: a resource for plant pathways and comparative analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D1029, doi. 10.1093/nar/gkw932

By:

Naithani, Sushma;
Preece, Justin;
D'Eustachio, Peter;
Gupta, Parul;
Amarasinghe, Vindhya;
Dharmawardhana, Palitha D.;
Guanming Wu;
Fabregat, Antonio;
Elser, Justin L.;
Weiser, Joel;
Keays, Maria;
Fuentes, Alfonso Munoz-Pomer;
Petryszak, Robert;
Stein, Lincoln D.;
Ware, Doreen;
Jaiswal, Pankaj

Publication type:

Article

The Reactome pathway Knowledgebase.

Published in:

Nucleic Acids Research, 2016, v. 44, p. D481, doi. 10.1093/nar/gkv1351

By:

Fabregat, Antonio;
Sidiropoulos, Konstantinos;
Garapati, Phani;
Gillespie, Marc;
Hausmann, Kerstin;
Haw, Robin;
Jassal, Bijay;
Jupe, Steven;
Korninger, Florian;
McKay, Sheldon;
Matthews, Lisa;
May, Bruce;
Milacic, Marija;
Rothfels, Karen;
Shamovsky, Veronica;
Webber, Marissa;
Weiser, Joel;
Williams, Mark;
Guanming Wu;
Stein, Lincoln

Publication type:

Article

Gramene 2013: comparative plant genomics resources.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D1193, doi. 10.1093/nar/gkt1110

By:

Monaco, Marcela K.;
Stein, Joshua;
Naithani, Sushma;
Wei, Sharon;
Dharmawardhana, Palitha;
Kumari, Sunita;
Amarasinghe, Vindhya;
Youens-Clark, Ken;
Thomason, James;
Preece, Justin;
Pasternak, Shiran;
Olson, Andrew;
Jiao, Yinping;
Lu, Zhenyuan;
Bolser, Dan;
Kerhornou, Arnaud;
Staines, Dan;
Walts, Brandon;
Wu, Guanming;
D’Eustachio, Peter

Publication type:

Article

The Reactome pathway knowledgebase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D472, doi. 10.1093/nar/gkt1102

By:

Croft, David;
Mundo, Antonio Fabregat;
Haw, Robin;
Milacic, Marija;
Weiser, Joel;
Wu, Guanming;
Caudy, Michael;
Garapati, Phani;
Gillespie, Marc;
Kamdar, Maulik R.;
Jassal, Bijay;
Jupe, Steven;
Matthews, Lisa;
May, Bruce;
Palatnik, Stanislav;
Rothfels, Karen;
Shamovsky, Veronica;
Song, Heeyeon;
Williams, Mark;
Birney, Ewan

Publication type:

Article

Circulating Neoplastic-Immune Hybrid Cells Predict Metastatic Progression in Uveal Melanoma.

Published in:

Cancers, 2022, v. 14, n. 19, p. 4617, doi. 10.3390/cancers14194617

By:

Parappilly, Michael S.;
Chin, Yuki;
Whalen, Riley M.;
Anderson, Ashley N.;
Robinson, Trinity S.;
Strgar, Luke;
Sutton, Thomas L.;
Conley, Patrick;
Klocke, Christopher;
Gibbs, Summer L.;
Chang, Young Hwan;
Wu, Guanming;
Wong, Melissa H.;
Skalet, Alison H.

Publication type:

Article

A network module-based method for identifying cancer prognostic signatures.

Published in:

Genome Biology, 2012, v. 13, n. 12, p. 1, doi. 10.1186/gb-2012-13-12-r112

By:

Guanming Wu;
Stein, Lincoln

Publication type:

Article

Two distinct myosin light chain structures are induced by specific variations within the bound IQ motifs-functional implications.

Published in:

EMBO Journal, 2003, v. 22, n. 3, p. 362, doi. 10.1093/emboj/cdg058

By:

Terrak, Mohammed;
Guanming Wu;
Stafford, Walter F.;
Lu, Renne C.;
Dominguez, Roberto

Publication type:

Article

Reactome graph database: Efficient access to complex pathway data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005968

By:

Fabregat, Antonio;
Korninger, Florian;
Viteri, Guilherme;
Sidiropoulos, Konstantinos;
Marin-Garcia, Pablo;
Ping, Peipei;
Wu, Guanming;
Stein, Lincoln;
D’Eustachio, Peter;
Hermjakob, Henning

Publication type:

Article

Illuminate the Functions of Dark Proteins Using the Reactome‐IDG Web Portal.

Published in:

Current Protocols, 2023, v. 3, n. 7, p. 1, doi. 10.1002/cpz1.845

By:

Beavers, Deidre;
Brunson, Timothy;
Sanati, Nasim;
Matthews, Lisa;
Haw, Robin;
Shorser, Solomon;
Sevilla, Cristoffer;
Viteri, Guilherme;
Conley, Patrick;
Rothfels, Karen;
Hermjakob, Henning;
Stein, Lincoln;
D'Eustachio, Peter;
Wu, Guanming

Publication type:

Article

Comprehensive definition of human immunodominant CD8 antigens in tuberculosis.

Published in:

NPJ Vaccines, 2017, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41541-017-0008-6

By:

Lewinsohn, Deborah A.;
Swarbrick, Gwendolyn M.;
Park, Byung;
Cansler, Meghan E.;
Null, Megan D.;
Toren, Katelynne G.;
Baseke, Joy;
Zalwango, Sarah;
Mayanja-Kizza, Harriet;
Malone, LaShaunda L.;
Nyendak, Melissa;
Wu, Guanming;
Guinn, Kristi;
McWeeney, Shannon;
Mori, Tomi;
Chervenak, Keith A.;
Sherman, David R.;
Boom, W. Henry;
Lewinsohn, David M.

Publication type:

Article

Network-Based Predictors of Progression in Head and Neck Squamous Cell Carcinoma.

Published in:

Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00183

By:

Sanati, Nasim;
Iancu, Ovidiu D.;
Guanming Wu;
Jacobs, James E.;
McWeeney, Shannon K.

Publication type:

Article

Reactome and ORCID—fine-grained credit attribution for community curation.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz123

By:

Viteri, Guilherme;
Matthews, Lisa;
Varusai, Thawfeek;
Gillespie, Marc;
Milacic, Marija;
Cook, Justin;
Weiser, Joel;
Shorser, Solomon;
Sidiropoulos, Konstantinos;
Fabregat, Antonio;
Haw, Robin;
Wu, Guanming;
Stein, Lincoln;
D'Eustachio, Peter;
Hermjakob, Henning

Publication type:

Article

A controlled vocabulary for pathway entities and events.

Published in:

Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau060

By:

Jupe, Steve;
Jassal, Bijay;
Williams, Mark;
Guanming Wu

Publication type:

Article

Natural Product Target Network Reveals Potential for Cancer Combination Therapies.

Published in:

Frontiers in Pharmacology, 2019, p. N.PAG, doi. 10.3389/fphar.2019.00557

By:

Chamberlin, Steven R.;
Blucher, Aurora;
Wu, Guanming;
Shinto, Lynne;
Choonoo, Gabrielle;
Kulesz-Martin, Molly;
McWeeney, Shannon

Publication type:

Article

The Closer, the Better? Impact of Tourists' Psychological Distance on Their Travel Intention in the Post-Pandemic Era.

Published in:

Journal of China Tourism Research, 2024, v. 20, n. 3, p. 521, doi. 10.1080/19388160.2023.2232537

By:

Wu, Guanming;
Guan, Siqi;
Xu, Yu-Hua;
Chu, Chenjin;
Zhu, Zimu

Publication type:

Article

Corrigendum: The BioPAX community standard for pathway data sharing.

Published in:

2012

By:

Demir, Emek;
Cary, Michael P;
Paley, Suzanne;
Fukuda, Ken;
Lemer, Christian;
Vastrik, Imre;
Wu, Guanming;
D'Eustachio, Peter;
Schaefer, Carl;
Luciano, Joanne;
Schacherer, Frank;
Martinez-Flores, Irma;
Hu, Zhenjun;
Jimenez-Jacinto, Veronica;
Joshi-Tope, Geeta;
Kandasamy, Kumaran;
Lopez-Fuentes, Alejandra C;
Mi, Huaiyu;
Pichler, Elgar;
Rodchenkov, Igor

Publication type:

Erratum

The BioPAX community standard for pathway data sharing.

Published in:

2010

By:

Demir, Emek;
Cary, Michael P;
Paley, Suzanne;
Fukuda, Ken;
Lemer, Christian;
Vastrik, Imre;
Wu, Guanming;
D'Eustachio, Peter;
Schaefer, Carl;
Luciano, Joanne;
Schacherer, Frank;
Martinez-Flores, Irma;
Hu, Zhenjun;
Jimenez-Jacinto, Veronica;
Joshi-Tope, Geeta;
Kandasamy, Kumaran;
Lopez-Fuentes, Alejandra C;
Mi, Huaiyu;
Pichler, Elgar;
Rodchenkov, Igor

Publication type:

Correction Notice

The BioPAX community standard for pathway data sharing.

Published in:

Nature Biotechnology, 2010, v. 28, n. 9, p. 935, doi. 10.1038/nbt.1666

By:

Demir, Emek;
Cary, Michael P.;
Paley, Suzanne;
Fukuda, Ken;
Lemer, Christian;
Vastrik, Imre;
Wu, Guanming;
D'Eustachio, Peter;
Schaefer, Carl;
Luciano, Joanne;
Schacherer, Frank;
Martinez-Flores, Irma;
Hu, Zhenjun;
Jimenez-Jacinto, Veronica;
Joshi-Tope, Geeta;
Kandasamy, Kumaran;
Lopez-Fuentes, Alejandra C.;
Mi, Huaiyu;
Pichler, Elgar;
Rodchenkov, Igor

Publication type:

Article