Works by Gu, Zuguang

Results: 34

Follicular T helper cells shape the HCV-specific CD4+ T cell repertoire after virus elimination.

Published in:

2020

By:

Smits, Maike;
Zoldan, Katharina;
Ishaque, Naveed;
Zuguang Gu;
Jechow, Katharina;
Wieland, Dominik;
Conrad, Christian;
Eils, Roland;
Fauvelle, Catherine;
Baumert, Thomas F.;
Emmerich, Florian;
Bengsch, Bertram;
Neumann-Haefelin, Christoph;
Hofmann, Maike;
Thimme, Robert;
Boettler, Tobias;
Gu, Zuguang

Publication type:

journal article

DNMT3A-dependent DNA methylation shapes the endothelial enhancer landscape Open Access.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 10, p. 1, doi. 10.1093/nar/gkaf435

By:

Gehrs, Stephanie;
Gu, Zuguang;
Hey, Joschka;
Weichenhan, Dieter;
Buckwalter, Niklas;
Jakab, Moritz;
Hotz-Wagenblatt, Agnes;
Breuer, Kersten;
Prada, Maria Llamazares;
Hübschmann, Daniel;
Schlereth, Katharina;
Plass, Christoph;
Augustin, Hellmut

Publication type:

Article

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 18, p. 2847, doi. 10.1093/bioinformatics/btw313

By:

Schlesner, Matthias;
Zuguang Gu;
Eils, Roland

Publication type:

Article

HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2372, doi. 10.1093/bioinformatics/btw161

By:

Gu, Zuguang;
Eils, Roland;
Schlesner, Matthias

Publication type:

Article

circlize implements and enhances circular visualization in R.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2811, doi. 10.1093/bioinformatics/btu393

By:

Gu, Zuguang;
Gu, Lei;
Eils, Roland;
Schlesner, Matthias;
Brors, Benedikt

Publication type:

Article

CePa: an R package for finding significant pathways weighted by multiple network centralities.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 658, doi. 10.1093/bioinformatics/btt008

By:

Gu, Zuguang;
Wang, Jin

Publication type:

Article

BAZ2A (TIP5) is involved in epigenetic alterations in prostate cancer and its overexpression predicts disease recurrence.

Published in:

Nature Genetics, 2015, v. 47, n. 1, p. 22, doi. 10.1038/ng.3165

By:

Gu, Lei;
Provenzano, Maurizio;
Yaspo, Marie-Laure;
Korbel, Jan;
Schlomm, Thorsten;
Eils, Roland;
Frommel, Sandra C;
Oakes, Christopher C;
Baer, Constance;
Weiss, Melanie;
Plass, Christoph;
Simon, Ronald;
Grupp, Katharina;
Sauter, Guido;
Gerig, Cristina Y;
Bär, Dominik;
Santoro, Raffaella;
Robinson, Mark D;
Gu, Zuguang;
Brors, Benedikt

Publication type:

Article

InterMitoBase: An annotated database and analysis platform of protein-protein interactions for human mitochondria.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 335, doi. 10.1186/1471-2164-12-335

By:

Zuguang Gu;
Jie Li;
Song Gao;
Ming Gong;
Junling Wang;
Hua Xu;
Chenyu Zhang;
Jin Wang

Publication type:

Article

The genomic and transcriptional landscape of primary central nervous system lymphoma.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30050-y

By:

Radke, Josefine;
Ishaque, Naveed;
Koll, Randi;
Gu, Zuguang;
Schumann, Elisa;
Sieverling, Lina;
Uhrig, Sebastian;
Hübschmann, Daniel;
Toprak, Umut H.;
López, Cristina;
Hostench, Xavier Pastor;
Borgoni, Simone;
Juraeva, Dilafruz;
Pritsch, Fabienne;
Paramasivam, Nagarajan;
Balasubramanian, Gnana Prakash;
Schlesner, Matthias;
Sahay, Shashwat;
Weniger, Marc;
Pehl, Debora

Publication type:

Article

MiRmat: Mature microRNA Sequence Prediction.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051673

By:

Chenfeng He;
Ying-Xin Li;
Guangxin Zhang;
Zuguang Gu;
Rong Yang;
Jie Li;
Zhi John Lu;
Zhi-Hua Zhou;
Chenyu Zhang;
Jin Wang

Publication type:

Article

Impact of cancer mutational signatures on transcription factor motifs in the human genome.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-019-0525-4

By:

Yiu Chan, Calvin Wing;
Gu, Zuguang;
Bieg, Matthias;
Eils, Roland;
Herrmann, Carl

Publication type:

Article

Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children.

Published in:

Molecular Systems Biology, 2016, v. 12, n. 3, p. n/a, doi. 10.15252/msb.20156520

By:

Bauer, Tobias;
Trump, Saskia;
Ishaque, Naveed;
Thürmann, Loreen;
Gu, Lei;
Bauer, Mario;
Bieg, Matthias;
Gu, Zuguang;
Weichenhan, Dieter;
Mallm, Jan‐Philipp;
Röder, Stefan;
Herberth, Gunda;
Takada, Eiko;
Mücke, Oliver;
Winter, Marcus;
Junge, Kristin M;
Grützmann, Konrad;
Rolle‐Kampczyk, Ulrike;
Wang, Qi;
Lawerenz, Christian

Publication type:

Article

gtrellis: an R/Bioconductor package for making genome-level Trellis graphics.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1051-4

By:

Zuguang Gu;
Eils, Roland;
Schlesner, Matthias

Publication type:

Article

Aromatic and proteomic analyses corroborate the distinction between Mediterranean landraces and modern varieties of durum wheat.

Published in:

Scientific Reports, 2016, p. 34619, doi. 10.1038/srep34619

By:

Vita, Federico;
Taiti, Cosimo;
Pompeiano, Antonio;
Gu, Zuguang;
Lo Presti, Emilio;
Whitney, Larisa;
Monti, Michele;
Di Miceli, Giuseppe;
Giambalvo, Dario;
Ruisi, Paolo;
Guglielminetti, Lorenzo;
Mancuso, Stefano

Publication type:

Article

Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation.

Published in:

Scientific Reports, 2016, p. 28616, doi. 10.1038/srep28616

By:

Trump, Saskia;
Bieg, Matthias;
Gu, Zuguang;
Thürmann, Loreen;
Bauer, Tobias;
Bauer, Mario;
Ishaque, Naveed;
Röder, Stefan;
Gu, Lei;
Herberth, Gunda;
Lawerenz, Christian;
Borte, Michael;
Schlesner, Matthias;
Plass, Christoph;
Diessl, Nicolle;
Eszlinger, Markus;
Mücke, Oliver;
Elvers, Horst-Dietrich;
Wissenbach, Dirk K.;
von Bergen, Martin

Publication type:

Article

Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07041-z

By:

Ishaque, Naveed;
Abba, Mohammed L.;
Hauser, Christine;
Patil, Nitin;
Paramasivam, Nagarajan;
Huebschmann, Daniel;
Leupold, Jörg Hendrik;
Balasubramanian, Gnana Prakash;
Kleinheinz, Kortine;
Toprak, Umut H.;
Hutter, Barbara;
Benner, Axel;
Shavinskaya, Anna;
Zhou, Chan;
Gu, Zuguang;
Kerssemakers, Jules;
Marx, Alexander;
Moniuszko, Marcin;
Kozlowski, Miroslaw;
Reszec, Joanna

Publication type:

Article

Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes.

Published in:

BMC Systems Biology, 2012, v. 6, n. 1, p. 56, doi. 10.1186/1752-0509-6-56

By:

Zuguang Gu;
Jialin Liu;
Kunming Cao;
Junfeng Zhang;
Jin Wang

Publication type:

Article

Improve consensus partitioning via a hierarchical procedure.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac048

By:

Gu, Zuguang;
Hübschmann, Daniel

Publication type:

Article

Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-20225-w

By:

Wu, Yonghe;
Fletcher, Michael;
Gu, Zuguang;
Wang, Qi;
Costa, Barbara;
Bertoni, Anna;
Man, Ka-Hou;
Schlotter, Magdalena;
Felsberg, Jörg;
Mangei, Jasmin;
Barbus, Martje;
Gaupel, Ann-Christin;
Wang, Wei;
Weiss, Tobias;
Eils, Roland;
Weller, Michael;
Liu, Haikun;
Reifenberger, Guido;
Korshunov, Andrey;
Angel, Peter

Publication type:

Article

Analysis of mutational signatures with yet another package for signature analysis.

Published in:

Genes, Chromosomes & Cancer, 2021, v. 60, n. 5, p. 314, doi. 10.1002/gcc.22918

By:

Hübschmann, Daniel;
Jopp‐Saile, Lea;
Andresen, Carolin;
Krämer, Stephen;
Gu, Zuguang;
Heilig, Christoph E.;
Kreutzfeldt, Simon;
Teleanu, Veronica;
Fröhling, Stefan;
Eils, Roland;
Schlesner, Matthias

Publication type:

Article

simona: a comprehensive R package for semantic similarity analysis on bio-ontologies.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10759-4

By:

Gu, Zuguang

Publication type:

Article

simona: a comprehensive R package for semantic similarity analysis on bio-ontologies.

Published in:

BMC Genomics, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12864-024-10759-4

By:

Gu, Zuguang

Publication type:

Article

cola: an R/Bioconductor package for consensus partitioning through a general framework.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e15, doi. 10.1093/nar/gkaa1146

By:

Gu, Zuguang;
Schlesner, Matthias;
Hübschmann, Daniel

Publication type:

Article

Pheno-seq – linking visual features and gene expression in 3D cell culture systems.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48771-4

By:

Tirier, Stephan M.;
Park, Jeongbin;
Preußer, Friedrich;
Amrhein, Lisa;
Gu, Zuguang;
Steiger, Simon;
Mallm, Jan-Philipp;
Krieger, Teresa;
Waschow, Marcel;
Eismann, Björn;
Gut, Marta;
Gut, Ivo G.;
Rippe, Karsten;
Schlesner, Matthias;
Theis, Fabian;
Fuchs, Christiane;
Ball, Claudia R.;
Glimm, Hanno;
Eils, Roland;
Conrad, Christian

Publication type:

Article

biotextgraph: graphical summarization of functional similarities from textual information.

Published in:

Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae357

By:

Sato, Noriaki;
Zhang, Yao-zhong;
Gu, Zuguang;
Imoto, Seiya

Publication type:

Article

rGREAT: an R/bioconductor package for functional enrichment on genomic regions.

Published in:

Bioinformatics, 2023, v. 39, n. 1, p. 1, doi. 10.1093/bioinformatics/btac745

By:

Gu, Zuguang;
Hübschmann, Daniel

Publication type:

Article

Pkgndep: a tool for analyzing dependency heaviness of R packages.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4248, doi. 10.1093/bioinformatics/btac449

By:

Gu, Zuguang;
Hübschmann, Daniel

Publication type:

Article

Make Interactive Complex Heatmaps in R.

Published in:

Bioinformatics, 2022, v. 38, n. 5, p. 1460, doi. 10.1093/bioinformatics/btab806

By:

Gu, Zuguang;
Hübschmann, Daniel

Publication type:

Article

spiralize: an R package for visualizing data on spirals.

Published in:

Bioinformatics, 2022, v. 38, n. 5, p. 1434, doi. 10.1093/bioinformatics/btab778

By:

Gu, Zuguang;
Hübschmann, Daniel

Publication type:

Article

EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4625-x

By:

Gu, Zuguang;
Eils, Roland;
Schlesner, Matthias;
Ishaque, Naveed

Publication type:

Article

Mutational patterns and regulatory networks in epigenetic subgroups of meningioma.

Published in:

Acta Neuropathologica, 2019, v. 138, n. 2, p. 295, doi. 10.1007/s00401-019-02008-w

By:

Paramasivam, Nagarajan;
Hübschmann, Daniel;
Toprak, Umut H;
Ishaque, Naveed;
Neidert, Marian;
Schrimpf, Daniel;
Stichel, Damian;
Reuss, David;
Sievers, Philipp;
Reinhardt, Annekathrin;
Wefers, Annika K.;
Jones, David T. W.;
Gu, Zuguang;
Werner, Johannes;
Uhrig, Sebastian;
Wirsching, Hans-Georg;
Schick, Matthias;
Bewerunge-Hudler, Melanie;
Beck, Katja;
Brehmer, Stephanie

Publication type:

Article

Differentially methylated regions within lung cancer risk loci are enriched in deregulated enhancers.

Published in:

Epigenetics, 2022, v. 17, n. 2, p. 117, doi. 10.1080/15592294.2021.1878723

By:

Laplana, Marina;
Bieg, Matthias;
Faltus, Christian;
Melnik, Svitlana;
Bogatyrova, Olga;
Gu, Zuguang;
Muley, Thomas;
Meister, Michael;
Dienemann, Hendrik;
Herpel, Esther;
Amos, Christopher I.;
Schlesner, Matthias;
Eils, Roland;
Plass, Christoph;
Risch, Angela

Publication type:

Article

IFNβ1 secreted by breast cancer cells undergoing chemotherapy reprograms stromal fibroblasts to support tumour growth after treatment.

Published in:

Molecular Oncology, 2021, v. 15, n. 5, p. 1308, doi. 10.1002/1878-0261.12905

By:

Maia, Ana;
Gu, Zuguang;
Koch, André;
Berdiel‐Acer, Mireia;
Will, Rainer;
Schlesner, Matthias;
Wiemann, Stefan

Publication type:

Article

Hypoxia induces PGC-1α expression and mitochondrial biogenesis in the myocardium of TOF patients.

Published in:

Cell Research, 2010, v. 20, n. 6, p. 676, doi. 10.1038/cr.2010.46

By:

Lingyun Zhu;
Qiang Wang;
Lin Zhang;
Zhixiang Fang;
Fang Zhao;
Zhiyuan Lv;
Zuguang Gu;
Junfeng Zhang;
Jin Wang;
Ke Zen;
Yang Xiang;
Dongjin Wang;
Chen-Yu Zhang

Publication type:

Article