Works matching AU Gryder, Berkley E.

Results: 14

BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27176-w

By:

Laubscher, Dominik;
Gryder, Berkley E.;
Sunkel, Benjamin D.;
Andresson, Thorkell;
Wachtel, Marco;
Das, Sudipto;
Roschitzki, Bernd;
Wolski, Witold;
Wu, Xiaoli S.;
Chou, Hsien-Chao;
Song, Young K.;
Wang, Chaoyu;
Wei, Jun S.;
Wang, Meng;
Wen, Xinyu;
Ngo, Quy Ai;
Marques, Joana G.;
Vakoc, Christopher R.;
Schäfer, Beat W.;
Stanton, Benjamin Z.

Publication type:

Article

BET Bromodomain Degradation Disrupts Function but Not 3D Formation of RNA Pol2 Clusters.

Published in:

Pharmaceuticals (14248247), 2023, v. 16, n. 2, p. 199, doi. 10.3390/ph16020199

By:

Chin, Diana H.;
Osman, Issra;
Porch, Jadon;
Kim, Hyunmin;
Buck, Kristen K.;
Rodriguez, Javier;
Carapia, Bianca;
Yan, Deborah;
Moura, Stela B.;
Sperry, Jantzen;
Nakashima, Jonathan;
Altman, Kasey;
Altman, Delsee;
Gryder, Berkley E.

Publication type:

Article

Insights into pediatric rhabdomyosarcoma research: Challenges and goals.

Published in:

2019

By:

Yohe, Marielle E.;
Heske, Christine M.;
Stewart, Elizabeth;
Adamson, Peter C.;
Ahmed, Nabil;
Antonescu, Cristina R.;
Chen, Eleanor;
Collins, Natalie;
Ehrlich, Alan;
Galindo, Rene L.;
Gryder, Berkley E.;
Hahn, Heidi;
Hammond, Sharon;
Hatley, Mark E.;
Hawkins, Douglas S.;
Hayes, Madeline N.;
Hayes‐Jordan, Andrea;
Helman, Lee J.;
Hettmer, Simone;
Ignatius, Myron S.

Publication type:

journal article

MEK inhibition induces MYOG and remodels super-enhancers in RAS-driven rhabdomyosarcoma.

Published in:

Science Translational Medicine, 2018, v. 10, n. 448, p. 1, doi. 10.1126/scitranslmed.aan4470

By:

Yohe, Marielle E.;
Gryder, Berkley E.;
Shern, Jack F.;
Song, Young K.;
Chou, Hsien-Chao;
Sindiri, Sivasish;
Mendoza, Arnulfo;
Patidar, Rajesh;
Zhang, Xiaohu;
Guha, Rajarashi;
Butcher, Donna;
Isanogle, Kristine A.;
Robinson, Christina M.;
Luo, Xiaoling;
Chen, Jin-Qiu;
Walton, Ashley;
Awasthi, Parirokh;
Edmondson, Elijah F.;
Difilippantonio, Simone;
Wei, Jun S.

Publication type:

Article

Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP).

Published in:

Nature Protocols, 2020, v. 15, n. 3, p. 1209, doi. 10.1038/s41596-019-0285-9

By:

Gryder, Berkley E.;
Khan, Javed;
Stanton, Benjamin Z.

Publication type:

Article

KDM3B inhibitors disrupt the oncogenic activity of PAX3-FOXO1 in fusion-positive rhabdomyosarcoma.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45902-y

By:

Kim, Yong Yean;
Gryder, Berkley E.;
Sinniah, Ranuka;
Peach, Megan L.;
Shern, Jack F.;
Abdelmaksoud, Abdalla;
Pomella, Silvia;
Woldemichael, Girma M.;
Stanton, Benjamin Z.;
Milewski, David;
Barchi Jr., Joseph J.;
Schneekloth Jr, John S.;
Chari, Raj;
Kowalczyk, Joshua T.;
Shenoy, Shilpa R.;
Evans, Jason R.;
Song, Young K.;
Wang, Chaoyu;
Wen, Xinyu;
Chou, Hsien-Chao

Publication type:

Article

PAX3-FOXO1 uses its activation domain to recruit CBP/P300 and shape RNA Pol2 cluster distribution.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43780-4

By:

Asante, Yaw;
Benischke, Katharina;
Osman, Issra;
Ngo, Quy A.;
Wurth, Jakob;
Laubscher, Dominik;
Kim, Hyunmin;
Udhayakumar, Bhavatharini;
Khan, Md Imdadul H.;
Chin, Diana H.;
Porch, Jadon;
Chakraborty, Maharshi;
Sallari, Richard;
Delattre, Olivier;
Zaidi, Sakina;
Morice, Sarah;
Surdez, Didier;
Danielli, Sara G.;
Schäfer, Beat W.;
Gryder, Berkley E.

Publication type:

Article

Temporal chromatin accessibility changes define transcriptional states essential for osteosarcoma metastasis.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42656-x

By:

Pontius, W. Dean;
Hong, Ellen S.;
Faber, Zachary J.;
Gray, Jeremy;
Peacock, Craig D.;
Bayles, Ian;
Lovrenert, Katreya;
Chin, Diana H.;
Gryder, Berkley E.;
Bartels, Cynthia F.;
Scacheri, Peter C.

Publication type:

Article

Biosemiotic Entropy of the Genome: Mutations and Epigenetic Imbalances Resulting in Cancer.

Published in:

Entropy, 2013, v. 15, n. 1, p. 234, doi. 10.3390/e15010234

By:

Gryder, Berkley E.;
Nelson, Chase W.;
Shepard, Samuel S.

Publication type:

Article

EWS‐FLI1 reprograms the metabolism of Ewing sarcoma cells via positive regulation of glutamine import and serine‐glycine biosynthesis.

Published in:

Molecular Carcinogenesis, 2018, v. 57, n. 10, p. 1342, doi. 10.1002/mc.22849

By:

Sen, Nirmalya;
Cross, Allison M.;
Lorenzi, Philip L.;
Khan, Javed;
Gryder, Berkley E.;
Kim, Suntae;
Caplen, Natasha J.

Publication type:

Article

Interaction between SNAI2 and MYOD enhances oncogenesis and suppresses differentiation in Fusion Negative Rhabdomyosarcoma.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20386-8

By:

Pomella, Silvia;
Sreenivas, Prethish;
Gryder, Berkley E.;
Wang, Long;
Milewski, David;
Cassandri, Matteo;
Baxi, Kunal;
Hensch, Nicole R.;
Carcarino, Elena;
Song, Young;
Chou, Hsien-Chao;
Yohe, Marielle E.;
Stanton, Benjamin Z.;
Amadio, Bruno;
Caruana, Ignazio;
De Stefanis, Cristiano;
De Vito, Rita;
Locatelli, Franco;
Chen, Yidong;
Chen, Eleanor Y.

Publication type:

Article

NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency.

Published in:

eLife, 2020, p. 1, doi. 10.7554/eLife.54993

By:

Marques, Joana G.;
Gryder, Berkley E.;
Pavlovic, Blaz;
Chung, Yeonjoo;
Ngo, Quy A.;
Frommelt, Fabian;
Gstaiger, Matthias;
Song, Young;
Benischke, Katharina;
Laubscher, Dominik;
Wachtel, Marco;
Khan, Javed;
Schäfer, Beat W.

Publication type:

Article

Chemical genomics reveals histone deacetylases are required for core regulatory transcription.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11046-7

By:

Gryder, Berkley E.;
Wu, Lei;
Woldemichael, Girma M.;
Pomella, Silvia;
Quinn, Taylor R.;
Park, Paul M. C.;
Cleveland, Abigail;
Stanton, Benjamin Z.;
Song, Young;
Rota, Rossella;
Wiest, Olaf;
Yohe, Marielle E.;
Shern, Jack F.;
Qi, Jun;
Khan, Javed

Publication type:

Article

Dose-dependent activation of gene expression is achieved using CRISPR and small molecules that recruit endogenous chromatin machinery.

Published in:

Nature Biotechnology, 2020, v. 38, n. 1, p. 50, doi. 10.1038/s41587-019-0296-7

By:

Chiarella, Anna M.;
Butler, Kyle V.;
Gryder, Berkley E.;
Lu, Dongbo;
Wang, Tiffany A.;
Yu, Xufen;
Pomella, Silvia;
Khan, Javed;
Jin, Jian;
Hathaway, Nathaniel A.

Publication type:

Article