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Analysis of protein structures containing HEPES and MES molecules.
- Published in:
- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 9, p. 1, doi. 10.1002/pro.4415
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- Article
Automated Protein Secondary Structure Assignment from C α Positions Using Neural Networks.
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- Biomolecules (2218-273X), 2022, v. 12, n. 6, p. 841, doi. 10.3390/biom12060841
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- Article
Lifestyles Shape the Cytochrome P450 Repertoire of the Bacterial Phylum Proteobacteria.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 10, p. 5821, doi. 10.3390/ijms23105821
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- Article
Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 9, p. 5057, doi. 10.3390/ijms23095057
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- Article
An Unprecedented Number of Cytochrome P450s Are Involved in Secondary Metabolism in Salinispora Species.
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- Microorganisms, 2022, v. 10, n. 5, p. 871, doi. 10.3390/microorganisms10050871
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- Article
VisuaLife: library for interactive visualization in rich web applications.
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- Bioinformatics, 2021, v. 37, n. 20, p. 3662, doi. 10.1093/bioinformatics/btab251
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- Article
In Silico Structural Modeling and Analysis of Interactions of Tremellomycetes Cytochrome P450 Monooxygenases CYP51s with Substrates and Azoles.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 15, p. 7811, doi. 10.3390/ijms22157811
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- Article
Ancient Bacterial Class Alphaproteobacteria Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 11, p. 5542, doi. 10.3390/ijms22115542
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- Article
In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria.
- Published in:
- Molecules, 2021, v. 26, n. 6, p. 1538, doi. 10.3390/molecules26061538
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- Article
More P450s Are Involved in Secondary Metabolite Biosynthesis in Streptomyces Compared to Bacillus, Cyanobacteria, and Mycobacterium.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 13, p. 4814, doi. 10.3390/ijms21134814
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- Article
Better together: Elements of successful scientific software development in a distributed collaborative community.
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- PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007507
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- Article
BioShell 3.0: Library for Processing Structural Biology Data.
- Published in:
- Biomolecules (2218-273X), 2020, v. 10, n. 3, p. 461, doi. 10.3390/biom10030461
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- Article
BioShell-Threading: versatile Monte Carlo package for protein 3D threading.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-22
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- Article
Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics.
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- International Journal of Molecular Sciences, 2013, v. 14, n. 5, p. 9893, doi. 10.3390/ijms14059893
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- Article
BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles.
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- Nucleic Acids Research, 2012, v. 40, p. W257, doi. 10.1093/nar/gks555
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- Article
Optimization of protein models.
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- WIREs: Computational Molecular Science, 2012, v. 2, n. 3, p. 479, doi. 10.1002/wcms.1090
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- Article
Generalized Fragment Picking in Rosetta: Design, Protocols and Applications.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023294
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- Article
The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of α + β fold.
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- Protein Science: A Publication of the Protein Society, 2009, v. 18, n. 11, p. 2410, doi. 10.1002/pro.251
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- Article
Fast and accurate methods for predicting short-range constraints in protein models.
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- Journal of Computer-Aided Molecular Design, 2008, v. 22, n. 11, p. 783, doi. 10.1007/s10822-008-9213-8
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- Article
Utility library for structural bioinformatics.
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- Bioinformatics, 2008, v. 24, n. 4, p. 584, doi. 10.1093/bioinformatics/btm627
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- Article
Comparative modeling without implicit sequence alignments.
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- Bioinformatics, 2007, v. 23, n. 19, p. 2522, doi. 10.1093/bioinformatics/btm380
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- Article
T-Pile a package for thermodynamic calculations for biomolecules.
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- Bioinformatics, 2007, v. 23, n. 14, p. 1840, doi. 10.1093/bioinformatics/btm259
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- Article
Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates.
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- Journal of Computational Chemistry, 2007, v. 28, n. 9, p. 1593, doi. 10.1002/jcc.20624
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- Article
THERMODYNAMIC PROPERTIES OF POLYPEPTIDE CHAINS. PARALLEL TEMPERING MONTE CARLO SIMULATIONS.
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- Acta Physica Polonica B, 2007, v. 38, n. 5, p. 1899
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- Article
BioShell—a package of tools for structural biology computations.
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- Bioinformatics, 2006, v. 22, n. 5, p. 621, doi. 10.1093/bioinformatics/btk037
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- Article
Exploring protein energy landscapes with hierarchical clustering.
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- International Journal of Quantum Chemistry, 2005, v. 105, n. 6, p. 826, doi. 10.1002/qua.20741
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- Article
Protein structure prediction by tempering spatial constraints.
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- Journal of Computer-Aided Molecular Design, 2005, v. 19, n. 8, p. 603, doi. 10.1007/s10822-005-9016-0
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- Article
HCPM—program for hierarchical clustering of protein models.
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- Bioinformatics, 2005, v. 21, n. 14, p. 3179, doi. 10.1093/bioinformatics/bti450
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- Article
A new approach to prediction of short-range conformational propensities in proteins.
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- Bioinformatics, 2005, v. 21, n. 7, p. 981, doi. 10.1093/bioinformatics/bti080
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- Article
A simple lattice model that exhibits a protein-like cooperative all-or-none folding transition.
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- Biopolymers, 2003, v. 69, n. 3, p. 399, doi. 10.1002/bip.10385
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- Article