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Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella.
Published in:
BMC Systems Biology, 2011, v. 5, n. 1, p. 100, doi. 10.1186/1752-0509-5-100
By:
- Hyunjin Yoon;
- Ansong, Charles;
- McDermott, Jason E.;
- Gritsenko, Marina;
- Smith, Richard D.;
- Heffron, Fred;
- Adkins, Joshua N.
Publication type:
Article
Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.
Published in:
Journal of Pathology, 2017, v. 243, n. 1, p. 78, doi. 10.1002/path.4929
By:
- Wang, Sheng;
- Yang, Feng;
- Petyuk, Vladislav A;
- Shukla, Anil K;
- Monroe, Matthew E;
- Gritsenko, Marina A;
- Rodland, Karin D;
- Smith, Richard D;
- Qian, Wei‐Jun;
- Gong, Cheng‐Xin;
- Liu, Tao
Publication type:
Article
Longitudinal analysis of host protein serum signatures of treatment and recovery in pulmonary tuberculosis.
Published in:
PLoS ONE, 2024, v. 19, n. 2, p. 1, doi. 10.1371/journal.pone.0294603
By:
- Powell, Samantha M.;
- Jarsberg, Leah G.;
- Zionce, Erin L. M.;
- Anderson, Lindsey N.;
- Gritsenko, Marina A.;
- Nahid, Payam;
- Jacobs, Jon M.
Publication type:
Article
Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model.
Published in:
Experimental Dermatology, 2012, v. 21, n. 5, p. 352, doi. 10.1111/j.1600-0625.2012.01470.x
By:
- Yang, Feng;
- Waters, Katrina M.;
- Webb-Robertson, Bobbie-Jo;
- Sowa, Marianne B.;
- von Neubeck, Claere;
- Aldrich, Josh T.;
- Meng Markillie, Lye;
- Wirgau, Rachel M.;
- Gritsenko, Marina A.;
- Zhao, Rui;
- Camp, David G.;
- Smith, Richard D.;
- Stenoien, David L.
Publication type:
Article
Proteomic Analysis of Saliva in HIV-Positive Heroin Addicts Reveals Proteins Correlated with Cognition.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0089366
By:
- Dominy, Stephen S.;
- Brown, Joseph N.;
- Ryder, Mark I.;
- Gritsenko, Marina;
- Jacobs, Jon M.;
- Smith, Richard D.
Publication type:
Article
Proteomic Profiling of Exosomes Leads to the Identification of Novel Biomarkers for Prostate Cancer.
Published in:
PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082589
By:
- Duijvesz, Diederick;
- Burnum-Johnson, Kristin E.;
- Gritsenko, Marina A.;
- Hoogland, A. Marije;
- Vredenbregt-van den Berg, Mirella S.;
- Willemsen, Rob;
- Luider, Theo;
- Paša-Tolić, Ljiljana;
- Jenster, Guido
Publication type:
Article
Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142.
Published in:
PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0016680
By:
- Stöckel, Jana;
- Jacobs, Jon M.;
- Elvitigala, Thanura R.;
- Liberton, Michelle;
- Welsh, Eric A.;
- Polpitiya, Ashoka D.;
- Gritsenko, Marina A.;
- Nicora, Carrie D.;
- Koppenaal, David W.;
- Smith, Richard D.;
- Pakrasi, Himadri B.
Publication type:
Article
Phosphoproteomics Profiling of Human Skin Fibroblast Cells Reveals Pathways and Proteins Affected by Low Doses of Ionizing Radiation.
Published in:
PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0014152
By:
- Feng Yang;
- Waters, Katrina M.;
- Miller, John H.;
- Gritsenko, Marina A.;
- Rui Zhao;
- Xiuxia Du;
- Livesay, Eric A.;
- Purvine, Samuel O.;
- Monroe, Matthew E.;
- Yingchun Wang;
- Camp II, David G.;
- Smith, Richard D.;
- Stenoien, David L.
Publication type:
Article
Blood Peptidome-Degradome Profile of Breast Cancer.
Published in:
PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013133
By:
- Yufeng Shen;
- Tolić, Nikola;
- Tao Liu;
- Rui Zhao;
- Petritis, Brianne O.;
- Gritsenko, Marina A.;
- Camp, David G.;
- Moore, Ronald J.;
- Purvine, Samuel O.;
- Esteva, Francisco J.;
- Smith, Richard D.
Publication type:
Article
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC- MS proteomics experiments.
Published in:
Proteomics, 2013, v. 13, n. 3/4, p. 493, doi. 10.1002/pmic.201200269
By:
- Matzke, Melissa M.;
- Brown, Joseph N.;
- Gritsenko, Marina A.;
- Metz, Thomas O.;
- Pounds, Joel G.;
- Rodland, Karin D.;
- Shukla, Anil K.;
- Smith, Richard D.;
- Waters, Katrina M.;
- McDermott, Jason E.;
- Webb-Robertson, Bobbie-Jo
Publication type:
Article
Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells.
Published in:
Proteomics, 2011, v. 11, n. 10, p. 2019, doi. 10.1002/pmic.201000722
By:
- Wang, Yuexi;
- Yang, Feng;
- Gritsenko, Marina A.;
- Wang, Yingchun;
- Clauss, Therese;
- Liu, Tao;
- Shen, Yufeng;
- Monroe, Matthew E.;
- Lopez-Ferrer, Daniel;
- Reno, Theresa;
- Moore, Ronald J.;
- Klemke, Richard L.;
- Camp, David G.;
- Smith, Richard D.
Publication type:
Article
A proteomic view of Desulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry.
Published in:
Proteomics, 2006, v. 6, n. 15, p. 4286, doi. 10.1002/pmic.200500930
By:
- Weiwen Zhang;
- Marina A. Gritsenko;
- Ronald J. Moore;
- David E. Culley;
- Lei Nie;
- Konstantinos Petritis;
- Eric F. Strittmatter;
- David G. Camp;
- Richard D. Smith;
- Fred J. Brockman
Publication type:
Article
Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: The human mammary epithelial cell proteome.
Published in:
Proteomics, 2005, v. 5, n. 5, p. 1263, doi. 10.1002/pmic.200401055
By:
- Tao Liu;
- Wei-Jun Qian;
- Wan-Nan U. Chen;
- Jon M. Jacobs;
- Ronald J. Moore;
- David J. Anderson;
- Marina A. Gritsenko;
- Matthew E. Monroe;
- Brian D. Thrall;
- David G. Camp;
- Richard D. Smith
Publication type:
Article
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
Published in:
Proteomics, 2005, v. 5, n. 2, p. 572, doi. 10.1002/pmic.200400942
By:
- Qian, Wei-Jun;
- Jacobs, Jon M.;
- Camp, David G.;
- Monroe, Matthew E.;
- Moore, Ronald J.;
- Gritsenko, Marina A.;
- Calvano, Steve E.;
- Lowry, Stephen F.;
- Xiao, Wenzhong;
- Moldawer, Lyle L.;
- Davis, Ronald W.;
- Tompkins, Ronald G.;
- Smith, Richard D.
Publication type:
Article
Legionella pneumophila modulates host energy metabolism by ADP-ribosylation of ADP/ATP translocases.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.73611
By:
- Jiaqi Fu;
- Mowei Zhou;
- Gritsenko, Marina A.;
- Nakayasu, Ernesto S.;
- Song, Lei;
- Zhao-Qing Luo
Publication type:
Article
Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region.
Published in:
PLoS ONE, 2021, v. 16, n. 5, p. 1, doi. 10.1371/journal.pone.0250586
By:
- Jarsberg, Leah G.;
- Kedia, Komal;
- Wendler, Jason;
- Wright, Aaron T.;
- Piehowski, Paul D.;
- Gritsenko, Marina A.;
- Shi, Tujin;
- Lewinsohn, David M.;
- Sigal, George B.;
- Weiner, Marc H.;
- Smith, Richard D.;
- Keane, Joseph;
- Jacobs, Jon M.;
- Nahid, Payam
Publication type:
Article
A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43756-9
By:
- Moghieb, Ahmed;
- Tesfay, Lia;
- Nie, Song;
- Gritsenko, Marina;
- Fillmore, Thomas L.;
- Jacobs, Jon M.;
- Smith, Richard D.;
- Torti, Frank M.;
- Torti, Suzy V.;
- Shi, Tujin;
- Ansong, Charles
Publication type:
Article
Residual tissue repositories as a resource for population-based cancer proteomic studies.
Published in:
Clinical Proteomics, 2018, v. 15, n. 1, p. N.PAG, doi. 10.1186/s12014-018-9202-4
By:
- Piehowski, Paul D.;
- Petyuk, Vladislav A.;
- Sontag, Ryan L.;
- Gritsenko, Marina A.;
- Weitz, Karl K.;
- Fillmore, Thomas L.;
- Moon, Jamie;
- Makhlouf, Hala;
- Chuaqui, Rodrigo F.;
- Boja, Emily S.;
- Rodriguez, Henry;
- Lee, Jerry S. H.;
- Smith, Richard D.;
- Carrick, Danielle M.;
- Liu, Tao;
- Rodland, Karin D.
Publication type:
Article
Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics.
Published in:
PLoS Pathogens, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.ppat.1000719
By:
- Diamond, Deborah L.;
- Syder, Andrew J.;
- Jacobs, Jon M.;
- Sorensen, Christina M.;
- Walters, Kathie-Anne;
- Proll, Sean C.;
- McDermott, Jason E.;
- Gritsenko, Marina A.;
- Qibin Zhang;
- Rui Zhao;
- Metz, Thomas O.;
- Camp II, David G.;
- Waters, Katrina M.;
- Smith, Richard D.;
- Rice, Charles M.;
- Katze, Michael G.
Publication type:
Article
Machine learning-assisted elucidation of CD81-CD44 interactions in promoting cancer stemness and extracellular vesicle integrity.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.82669
By:
- Ramos, Erika K.;
- Chia-Feng Tsai;
- Yuzhi Jia;
- Yue Cao;
- Manu, Megan;
- Taftaf, Rokana;
- Hoffmann, Andrew D.;
- El-Shennawy, Lamiaa;
- Gritsenko, Marina A.;
- Adorno-Cruz, Valery;
- Schuster, Emma J.;
- Scholten, David;
- Patel, Dhwani;
- Xia Liu;
- Patel, Priyam;
- Wray, Brian;
- Youbin Zhang;
- Shanshan Zhang;
- Moore, Ronald J.;
- Mathews, Jeremy V.
Publication type:
Article
Stable Acinar Progenitor Cell Model Identifies Treacle-Dependent Radioresistance.
Published in:
Radiation Research, 2019, v. 192, n. 2, p. 135, doi. 10.1667/RR15342.1
By:
- Weber, Thomas J.;
- Qian, Wei-Jun;
- Smith, Jordan N.;
- Gritsenko, Marina A.;
- Hu, Dehong;
- Chrisler, William B.;
- Timchalk, Charles
Publication type:
Article
Integrative Analysis of the Mitochondrial Proteome in Yeast.
Published in:
PLoS Biology, 2004, v. 2, n. 6, p. 1, doi. 10.1371/journal.pbio.0020160
By:
- Prokisch, Holger;
- Scharfe, Curt;
- Camp II, David G;
- Xiao, Wenzhong;
- David, Lior;
- Andreoli, Christophe;
- Monroe, Matthew E;
- Moore, Ronald J;
- Gritsenko, Marina A;
- Kozany, Christian;
- Hixson, Kim K;
- Mottaz, Heather M;
- Zischka, Hans;
- Ueffing, Marius;
- Herman, Zelek S;
- Davis, Ronald W;
- Meitinger, Thomas;
- Oefner, Peter J;
- Smith, Richard D;
- Steinmetz, Lars M
Publication type:
Article
Integrative Analysis of the Mitochondrial Proteome in Yeast.
Published in:
PLoS Biology, 2004, v. 2, n. 6, p. 795, doi. 10.1371/journal.pbio.0020160
By:
- Prokisch, Holger;
- Scharfe, Curt;
- Camp II, David G.;
- Xiao, Wenzhong;
- David, Lior;
- Andreoli, Christophe;
- Monroe, Matthew E.;
- Moore, Ronald J.;
- Gritsenko, Marina A.;
- Kozany, Christian;
- Hixson, Kim K.;
- Mottaz, Heather M.;
- Zischka, Hans;
- Ljeffing, Marius;
- Herman, Zelek S.;
- Davis, Ronald W.;
- Meitinger, Thomas;
- Oefner, Peter J.;
- Smith, Richard D.;
- Steinmetz, Lars M.
Publication type:
Article
Elucidating regulatory processes of intense physical activity by multi-omics analysis.
Published in:
Military Medical Research, 2023, v. 10, n. 1, p. 1, doi. 10.1186/s40779-023-00477-5
By:
- Nakayasu, Ernesto S.;
- Gritsenko, Marina A.;
- Kim, Young-Mo;
- Kyle, Jennifer E.;
- Stratton, Kelly G.;
- Nicora, Carrie D.;
- Munoz, Nathalie;
- Navarro, Kathleen M.;
- Claborne, Daniel;
- Gao, Yuqian;
- Weitz, Karl K.;
- Paurus, Vanessa L.;
- Bloodsworth, Kent J.;
- Allen, Kelsey A.;
- Bramer, Lisa M.;
- Montes, Fernando;
- Clark, Kathleen A.;
- Tietje, Grant;
- Teeguarden, Justin;
- Burnum-Johnson, Kristin E.
Publication type:
Article
Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation.
Published in:
Nature Protocols, 2021, v. 16, n. 8, p. 3737, doi. 10.1038/s41596-021-00566-6
By:
- Nakayasu, Ernesto S.;
- Gritsenko, Marina;
- Piehowski, Paul D.;
- Gao, Yuqian;
- Orton, Daniel J.;
- Schepmoes, Athena A.;
- Fillmore, Thomas L.;
- Frohnert, Brigitte I.;
- Rewers, Marian;
- Krischer, Jeffrey P.;
- Ansong, Charles;
- Suchy-Dicey, Astrid M.;
- Evans-Molina, Carmella;
- Qian, Wei-Jun;
- Webb-Robertson, Bobbie-Jo M.;
- Metz, Thomas O.
Publication type:
Article
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.
Published in:
Nature Protocols, 2018, v. 13, n. 7, p. 1632, doi. 10.1038/s41596-018-0006-9
By:
- Mertins, Philipp;
- Tang, Lauren C.;
- Krug, Karsten;
- Clark, David J.;
- Gritsenko, Marina A.;
- Chen, Lijun;
- Clauser, Karl R.;
- Clauss, Therese R.;
- Shah, Punit;
- Gillette, Michael A.;
- Petyuk, Vladislav A.;
- Thomas, Stefani N.;
- Mani, D. R.;
- Mundt, Filip;
- Moore, Ronald J.;
- Hu, Yingwei;
- Zhao, Rui;
- Schnaubelt, Michael;
- Keshishian, Hasmik;
- Monroe, Matthew E.
Publication type:
Article
Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light-dark cycle.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 32, doi. 10.1186/1471-2164-15-1185
By:
- Welkie, David;
- Xiaohui Zhang;
- Markville, Meng Lye;
- Taylor, Ronald;
- Orr, Galya;
- Jacobs, Jon;
- Bhide, Ketaki;
- Thimmapuram, Jyothi;
- Gritsenko, Marina;
- Mitchell, Hugh;
- Smith, Richard;
- Sherman, Louis A.
Publication type:
Article
Broad Substrate-Specific Phosphorylation Events Are Associated With the Initial Stage of Plant Cell Wall Recognition in Neurospora crassa.
Published in:
Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02317
By:
- Horta, Maria Augusta C.;
- Thieme, Nils;
- Gao, Yuqian;
- Burnum-Johnson, Kristin E.;
- Nicora, Carrie D.;
- Gritsenko, Marina A.;
- Lipton, Mary S.;
- Mohanraj, Karthikeyan;
- de Assis, Leandro José;
- Lin, Liangcai;
- Tian, Chaoguang;
- Braus, Gerhard H.;
- Borkovich, Katherine A.;
- Schmoll, Monika;
- Larrondo, Luis F.;
- Samal, Areejit;
- Goldman, Gustavo H.;
- Benz, J. Philipp
Publication type:
Article
Shotgun proteomics identifies proteins specific for acute renal transplant rejection.
Published in:
Proteomics - Clinical Applications, 2010, v. 4, n. 1, p. 32, doi. 10.1002/prca.200900124
By:
- Sigdel, Tara K.;
- Kaushal, Amit;
- Gritsenko, Marina;
- Norbeck, Angela D.;
- Qian, Wei-Jun;
- Xiao, Wenzhong;
- Camp II, David G.;
- Smith, Richard D.;
- Sarwal, Minnie M.
Publication type:
Article
Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer.
Published in:
Molecular Oncology, 2014, v. 8, n. 7, p. 1169, doi. 10.1016/j.molonc.2014.02.004
By:
- He, Jintang;
- Sun, Xuefei;
- Shi, Tujin;
- Schepmoes, Athena A.;
- Fillmore, Thomas L.;
- Petyuk, Vladislav A.;
- Xie, Fang;
- Zhao, Rui;
- Gritsenko, Marina A.;
- Yang, Feng;
- Kitabayashi, Naoki;
- Chae, Sung-Suk;
- Rubin, Mark A.;
- Siddiqui, Javed;
- Wei, John T.;
- Chinnaiyan, Arul M.;
- Qian, Wei-Jun;
- Smith, Richard D.;
- Kagan, Jacob;
- Srivastava, Sudhir
Publication type:
Article
Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML.
Published in:
Clinical Proteomics, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12014-022-09367-9
By:
- Gosline, Sara J. C.;
- Tognon, Cristina;
- Nestor, Michael;
- Joshi, Sunil;
- Modak, Rucha;
- Damnernsawad, Alisa;
- Posso, Camilo;
- Moon, Jamie;
- Hansen, Joshua R.;
- Hutchinson-Bunch, Chelsea;
- Pino, James C.;
- Gritsenko, Marina A.;
- Weitz, Karl K.;
- Traer, Elie;
- Tyner, Jeffrey;
- Druker, Brian;
- Agarwal, Anupriya;
- Piehowski, Paul;
- McDermott, Jason E.;
- Rodland, Karin
Publication type:
Article

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