Works by Griffith, Obi L.

Results: 48

Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community‐driven standards.

Published in:

Human Mutation, 2018, v. 39, n. 11, p. 1721, doi. 10.1002/humu.23651

By:

Danos, Arpad M.;
Ritter, Deborah I.;
Wagner, Alex H.;
Krysiak, Kilannin;
Sonkin, Dmitriy;
Micheel, Christine;
McCoy, Matthew;
Rao, Shruti;
Raca, Gordana;
Boca, Simina M.;
Roy, Angshumoy;
Barnell, Erica K.;
McMichael, Joshua F.;
Kiwala, Susanna;
Coffman, Adam C.;
Kujan, Lynzey;
Kulkarni, Shashikant;
Griffith, Malachi;
Madhavan, Subha;
Griffith, Obi L.

Publication type:

Article

GenVisR: Genomic Visualizations in R.

Published in:

Bioinformatics, 2016, v. 32, n. 19, p. 3012, doi. 10.1093/bioinformatics/btw325

By:

Skidmore, Zachary L.;
Wagner, Alex H.;
Lesurf, Robert;
Campbell, Katie M.;
Kunisaki, Jason;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3561, doi. 10.1093/bioinformatics/btv430

By:

Kumar, Runjun D.;
Searleman, Adam C.;
Swamidass, S. Joshua;
Griffith, Obi L.;
Bose, Ron

Publication type:

Article

Exploring the Genomic Landscape of Cancer Patient Cohorts with GenVisR.

Published in:

Current Protocols, 2021, v. 1, n. 9, p. 1, doi. 10.1002/cpz1.252

By:

Skidmore, Zachary L.;
Campbell, Katie M.;
Cotto, Kelsy C.;
Griffith, Malachi;
Griffith, Obi L.

Publication type:

Article

Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin.

Published in:

Nature Genetics, 2010, v. 42, n. 2, p. 181, doi. 10.1038/ng.518

By:

Morin, Ryan D.;
Johnson, Nathalie A.;
Severson, Tesa M.;
Mungall, Andrew J.;
Jianghong An;
Goya, Rodrigo;
Paul, Jessica E.;
Boyle, Merrill;
Woolcock, Bruce W.;
Kuchenbauer, Florian;
Yap, Damian;
Humphries, R. Keith;
Griffith, Obi L.;
Shah, Sohrab;
Zhu, Henry;
Kimbara, Michelle;
Shashkin, Pavel;
Charlot, Jean F.;
Tcherpakov, Marianna;
Corbett, Richard

Publication type:

Article

Identification of PADI2 as a potential breast cancer biomarker and therapeutic target.

Published in:

BMC Cancer, 2012, v. 12, n. 1, p. 1, doi. 10.1186/1471-2407-12-500

By:

McElwee, John L.;
Mohanan, Sunish;
Griffith, Obi L.;
Breuer, Heike C.;
Anguish, Lynne J.;
Cherrington, Brian D.;
Palmer, Ashley M.;
Howe, Louise R.;
Subramanian, Venkataraman;
Causey, Corey P.;
Thompson, Paul R.;
Gray, Joe W.;
Coonrod, Scott A.

Publication type:

Article

Identification of PADI2 as a potential breast cancer biomarker and therapeutic target.

Published in:

2012

By:

McElwee, John L;
Mohanan, Sunish;
Griffith, Obi L;
Breuer, Heike C;
Anguish, Lynne J;
Cherrington, Brian D;
Palmer, Ashley M;
Howe, Louise R;
Subramanian, Venkataraman;
Causey, Corey P;
Thompson, Paul R;
Gray, Joe W;
Coonrod, Scott A

Publication type:

journal article

Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133219

By:

Korkola, James E.;
Collisson, Eric A.;
Heiser, Laura;
Oates, Chris;
Bayani, Nora;
Itani, Sleiman;
Esch, Amanda;
Thompson, Wallace;
Griffith, Obi L.;
Wang, Nicholas J.;
Kuo, Wen-Lin;
Cooper, Brian;
Billig, Jessica;
Ziyad, Safiyyah;
Hung, Jenny L.;
Jakkula, Lakshmi;
Feiler, Heidi;
Lu, Yiling;
Mills, Gordon B.;
Spellman, Paul T.

Publication type:

Article

F11R Is a Novel Monocyte Prognostic Biomarker for Malignant Glioma.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077571

By:

Pong, Winnie W.;
Walker, Jason;
Wylie, Todd;
Magrini, Vincent;
Luo, Jingqin;
Emnett, Ryan J.;
Choi, Jaebok;
Cooper, Matthew L.;
Griffith, Malachi;
Griffith, Obi L.;
Rubin, Joshua B.;
Fuller, Gregory N.;
Piwnica-Worms, David;
Feng, Xi;
Hambardzumyan, Dolores;
DiPersio, John F.;
Mardis, Elaine R.;
Gutmann, David H.

Publication type:

Article

Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia.

Published in:

JAMA: Journal of the American Medical Association, 2015, v. 314, n. 8, p. 811, doi. 10.1001/jama.2015.9643

By:

Klco, Jeffery M.;
Miller, Christopher A.;
Griffith, Malachi;
Petti, Allegra;
Spencer, David H.;
Ketkar-Kulkarni, Shamika;
Wartman, Lukas D.;
Christopher, Matthew;
Lamprecht, Tamara L.;
Helton, Nicole M.;
Duncavage, Eric J.;
Payton, Jacqueline E.;
Baty, Jack;
Heath, Sharon E.;
Griffith, Obi L.;
Dong Shen;
Hundal, Jasreet;
Gue Su Chang;
Fulton, Robert;
O'Laughlin, Michelle

Publication type:

Article

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database.

Published in:

Genome Medicine, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13073-019-0686-y

By:

Lever, Jake;
Jones, Martin R.;
Danos, Arpad M.;
Krysiak, Kilannin;
Bonakdar, Melika;
Grewal, Jasleen K.;
Culibrk, Luka;
Griffith, Obi L.;
Griffith, Malachi;
Jones, Steven J. M.

Publication type:

Article

Best practices for bioinformatic characterization of neoantigens for clinical utility.

Published in:

Genome Medicine, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13073-019-0666-2

By:

Richters, Megan M.;
Xia, Huiming;
Campbell, Katie M.;
Gillanders, William E.;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

Biomarker panel diagnosis of thyroid cancer: a critical review.

Published in:

Expert Review of Anticancer Therapy, 2008, v. 8, n. 9, p. 1399, doi. 10.1586/14737140.8.9.1399

By:

Griffith, Obi L.;
Chiu, Connie G.;
Gown, Allen M.;
Jones, Steven J. M.;
Wiseman, Sam M.

Publication type:

Article

A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 6, p. e106, doi. 10.1371/journal.pcbi.0030106

By:

Montgomery, Stephen B.;
Griffith, Obi L.;
Schuetz, Johanna M.;
Brooks-Wilson, Angela;
Jones, Steven J. M.

Publication type:

Article

Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07407-3

By:

Griffith, Obi L.;
Spies, Nicholas C.;
Anurag, Meenakshi;
Griffith, Malachi;
Luo, Jingqin;
Tu, Dongsheng;
Yeo, Belinda;
Kunisaki, Jason;
Miller, Christopher A;
Krysiak, Kilannin;
Hundal, Jasreet;
Ainscough, Benjamin J;
Skidmore, Zachary L.;
Campbell, Katie;
Kumar, Runjun;
Fronick, Catrina;
Cook, Lisa;
Snider, Jacqueline E.;
Davies, Sherri;
Kavuri, Shyam M.

Publication type:

Article

The prognostic effects of somatic mutations in ER-positive breast cancer.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05914-x

By:

Griffith, Obi L.;
Spies, Nicholas C.;
Anurag, Meenakshi;
Griffith, Malachi;
Luo, Jingqin;
Tu, Dongsheng;
Yeo, Belinda;
Kunisaki, Jason;
Miller, Christopher A;
Krysiak, Kilannin;
Hundal, Jasreet;
Ainscough, Benjamin J;
Skidmore, Zachary L.;
Campbell, Katie;
Kumar, Runjun;
Fronick, Catrina;
Cook, Lisa;
Snider, Jacqueline E.;
Davies, Sherri;
Kavuri, Shyam M.

Publication type:

Article

Correction: Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.

Published in:

2017

By:

Korkola, James E.;
Collisson, Eric A.;
Heiser, Laura M.;
Oates, Chris;
Bayani, Nora;
Itani, Sleiman;
Esch, Amanda;
Thompson, Wallace;
Griffith, Obi L.;
Wang, Nicholas J.;
Kuo, Wen-Lin;
Cooper, Brian;
Billig, Jessica;
Ziyad, Safiyyah;
Hung, Jenny L.;
Jakkula, Lakshmi;
Feiler, Heidi;
Lu, Yiling;
Mills, Gordon B.;
Spellman, Paul T.

Publication type:

Correction Notice

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004393

By:

Griffith, Malachi;
Walker, Jason R.;
Spies, Nicholas C.;
Ainscough, Benjamin J.;
Griffith, Obi L.

Publication type:

Article

Genome Modeling System: A Knowledge Management Platform for Genomics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.pcbi.1004274

By:

Griffith, Malachi;
Griffith, Obi L.;
Smith, Scott M.;
Ramu, Avinash;
Callaway, Matthew B.;
Brummett, Anthony M.;
Kiwala, Michael J.;
Coffman, Adam C.;
Regier, Allison A.;
Oberkfell, Ben J.;
Sanderson, Gabriel E.;
Mooney, Thomas P.;
Nutter, Nathaniel G.;
Belter, Edward A.;
Du, Feiyu;
Long, Robert L.;
Abbott, Travis E.;
Ferguson, Ian T.;
Morton, David L.;
Burnett, Mark M.

Publication type:

Article

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003665

By:

Miller, Christopher A.;
White, Brian S.;
Dees, Nathan D.;
Griffith, Malachi;
Welch, John S.;
Griffith, Obi L.;
Vij, Ravi;
Tomasson, Michael H.;
Graubert, Timothy A.;
Walter, Matthew J.;
Ellis, Matthew J.;
Schierding, William;
DiPersio, John F.;
Ley, Timothy J.;
Mardis, Elaine R.;
Wilson, Richard K.;
Ding, Li

Publication type:

Article

Single-cell T-cell receptor repertoire profiling in dogs.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06174-w

By:

Hoang, My H.;
Skidmore, Zachary L.;
Rindt, Hans;
Chu, Shirley;
Fisk, Bryan;
Foltz, Jennifer A.;
Fronick, Catrina;
Fulton, Robert;
Zhou, Mingyi;
Bivens, Nathan J.;
Reinero, Carol N.;
Fehniger, Todd A.;
Griffith, Malachi;
Bryan, Jeffrey N.;
Griffith, Obi L.

Publication type:

Article

Metagenomic Analysis of DNA Viruses with Targeted Sequence Capture of Canine Lobular Orbital Adenomas and Normal Conjunctiva.

Published in:

Microorganisms, 2023, v. 11, n. 5, p. 1163, doi. 10.3390/microorganisms11051163

By:

Schaefer, Elizabeth A. F.;
Chu, Shirley;
Wylie, Kristine M.;
Wylie, Todd N.;
Griffith, Obi L.;
Pearce, Jacqueline W.;
Johnson, Gayle C.;
Bryan, Jeffrey N.;
Flesner, Brian K.

Publication type:

Article

DGIdb: mining the druggable genome.

Published in:

Nature Methods, 2013, v. 10, n. 12, p. 1209, doi. 10.1038/nmeth.2689

By:

Griffith, Malachi;
Griffith, Obi L;
Coffman, Adam C;
Weible, James V;
McMichael, Josh F;
Spies, Nicholas C;
Koval, James;
Das, Indraniel;
Callaway, Matthew B;
Eldred, James M;
Miller, Christopher A;
Subramanian, Janakiraman;
Govindan, Ramaswamy;
Kumar, Runjun D;
Bose, Ron;
Ding, Li;
Walker, Jason R;
Larson, David E;
Dooling, David J;
Smith, Scott M

Publication type:

Article

Alternative expression analysis by RNA sequencing.

Published in:

Nature Methods, 2010, v. 7, n. 10, p. 843, doi. 10.1038/nmeth.1503

By:

Griffith, Malachi;
Griffith, Obi L.;
Mwenifumbo, Jill;
Goya, Rodrigo;
Morrissy, A Sorana;
Morin, Ryan D;
Corbett, Richard;
Tang, Michelle J.;
Ying-Chen Hou;
Pugh, Trevor J.;
Robertson, Gordon;
Chittaranjan, Suganthi;
Ally, Adrian;
Asano, Jennifer K.;
Chan, Susanna Y.;
Li, Haiyan I.;
McDonald, Helen;
Teague, Kevin;
Yongjun Zhao;
Zeng, Thomas

Publication type:

Article

ALEXA: a microarray design platform for alternative expression analysis.

Published in:

2008

By:

Griffith, Malachi;
Tang, Michelle J;
Griffith, Obi L;
Morin, Ryan D;
Chan, Susanna Y;
Asano, Jennifer K;
Zeng, Thomas;
Flibotte, Stephane;
Ally, Adrian;
Baross, Agnes;
Hirst, Martin;
Jones, Steven J M;
Morin, Gregg B;
Tai, Isabella T;
Marra, Marco A

Publication type:

Letter

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.

Published in:

Nature Methods, 2007, v. 4, n. 8, p. 651, doi. 10.1038/nmeth1068

By:

Robertson, Gordon;
Hirst, Martin;
Bainbridge, Matthew;
Bilenky, Misha;
Yongjun Zhao;
Zeng, Thomas;
Euskirchen, Ghia;
Bernier, Bridget;
Varhol, Richard;
Delaney, Allen;
Thiessen, Nina;
Griffith, Obi L;
He, Ann;
Marra, Marco;
Snyder, Michael;
Jones, Steven

Publication type:

Article

Genomic Data and Privacy.

Published in:

Clinical Chemistry, 2025, v. 71, n. 1, p. 10, doi. 10.1093/clinchem/hvae184

By:

Myers, Candace T;
Kumar, Runjun D;
Pilgram, Lisa;
Bonomi, Luca;
Thomas, Mara;
Griffith, Obi L;
Fullerton, Stephanie M;
Gibbs, Richard A

Publication type:

Article

DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1227, doi. 10.1093/nar/gkad1040

By:

Cannon, Matthew;
Stevenson, James;
Stahl, Kathryn;
Basu, Rohit;
Coffman, Adam;
Kiwala, Susanna;
McMichael, Joshua F;
Kuzma, Kori;
Morrissey, Dorian;
Cotto, Kelsy;
Mardis, Elaine R;
Griffith, Obi L;
Griffith, Malachi;
Wagner, Alex H

Publication type:

Article

DGIdb 3.0: a redesign and expansion of the drug–gene interaction database.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1068, doi. 10.1093/nar/gkx1143

By:

Cotto, Kelsy C;
Wagner, Alex H;
Feng, Yang-Yang;
Kiwala, Susanna;
Coffman, Adam C;
Spies, Gregory;
Wollam, Alex;
Spies, Nicholas C;
Griffith, Obi L;
Griffith, Malachi

Publication type:

Article

Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers.

Published in:

Nature Communications, 2016, v. 7, n. 8, p. 12498, doi. 10.1038/ncomms12498

By:

Miller, Christopher A.;
Gindin, Yevgeniy;
Lu, Charles;
Griffith, Obi L;
Griffith, Malachi;
Shen, Dong;
Hoog, Jeremy;
Li, Tiandao;
Larson, David E.;
Watson, Mark;
Davies, Sherri R;
Hunt, Kelly;
Suman, Vera J.;
Snider, Jacqueline;
Walsh, Thomas;
Colditz, Graham A.;
DeSchryver, Katherine;
Wilson, Richard K.;
Mardis, Elaine R.;
Ellis, Matthew J.

Publication type:

Article

'Omic approaches to preventing or managing metastatic breast cancer.

Published in:

2011

By:

Griffith OL;
Gray JW;
Griffith, Obi L;
Gray, Joe W

Publication type:

journal article

Normalization of drug and therapeutic concepts with Thera-Py.

Published in:

JAMIA Open, 2023, v. 6, n. 4, p. 1, doi. 10.1093/jamiaopen/ooad093

By:

Cannon, Matthew;
Stevenson, James;
Kuzma, Kori;
Kiwala, Susanna;
Warner, Jeremy L;
Griffith, Obi L;
Griffith, Malachi;
Wagner, Alex H

Publication type:

Article

Organizing knowledge to enable personalization of medicine in cancer.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 438, doi. 10.1186/s13059-014-0438-7

By:

Good, Benjamin M.;
Ainscough, Benjamin J.;
McMichael, Josh F.;
Su, Andrew I.;
Griffith, Obi L.

Publication type:

Article

Modeling precision treatment of breast cancer.

Published in:

Genome Biology, 2013, v. 14, n. 10, p. R110, doi. 10.1186/gb-2013-14-10-r110

By:

Daemen, Anneleen;
Griffith, Obi L;
Heiser, Laura M;
Wang, Nicholas J;
Enache, Oana M;
Sanborn, Zachary;
Pepin, Francois;
Durinck, Steffen;
Korkola, James E;
Griffith, Malachi;
Joe S Hur;
Nam Huh;
Jongsuk Chung;
Cope, Leslie;
Fackler, Mary Jo;
Umbricht, Christopher;
Sukumar, Saraswati;
Seth, Pankaj;
Sukhatme, Vikas P;
Jakkula, Lakshmi R

Publication type:

Article

pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection.

Published in:

Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01384-7

By:

Xia, Huiming;
Hoang, My H.;
Schmidt, Evelyn;
Kiwala, Susanna;
McMichael, Joshua;
Skidmore, Zachary L.;
Fisk, Bryan;
Song, Jonathan J.;
Hundal, Jasreet;
Mooney, Thomas;
Walker, Jason R.;
Goedegebuure, S. Peter;
Miller, Christopher A.;
Gillanders, William E.;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

Personalized ctDNA micro-panels can monitor and predict clinical outcomes for patients with triple-negative breast cancer.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-20928-8

By:

Barnell, Erica K.;
Fisk, Bryan;
Skidmore, Zachary L.;
Cotto, Kelsy C.;
Basu, Anamika;
Anand, Aparna;
Richters, Megan M.;
Luo, Jingqin;
Fronick, Catrina;
Anurag, Meenakshi;
Fulton, Robert;
Ellis, Matthew J.;
Griffith, Obi L.;
Griffith, Malachi;
Ademuyiwa, Foluso O.

Publication type:

Article

High-performance web services for querying gene and variant annotation.

Published in:

Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0953-9

By:

Jiwen Xin;
Mark, Adam;
Afrasiabi, Cyrus;
Tsueng, Ginger;
Juchler, Moritz;
Gopal, Nikhil;
Stupp, Gregory S.;
Putman, Timothy E.;
Ainscough, Benjamin J.;
Griffith, Obi L.;
Torkamani, Ali;
Whetzel, Patricia L.;
Mungall, Christopher J.;
Mooney, Sean D.;
Su, Andrew I.;
Chunlei Wu

Publication type:

Article

Clinical implications of neoepitope landscapes for adult and pediatric cancers.

Published in:

Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0470-9

By:

Yang-Yang Feng;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens.

Published in:

Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0264-5

By:

Hundal, Jasreet;
Carreno, Beatriz M.;
Petti, Allegra A.;
Linette, Gerald P.;
Griffith, Obi L.;
Mardis, Elaine R.;
Griffith, Malachi

Publication type:

Article

A robust prognostic signature for hormone-positive node-negative breast cancer.

Published in:

Genome Medicine, 2013, v. 5, n. 10, p. 19, doi. 10.1186/gm496

By:

Griffith, Obi L.;
Pepin, François;
Enache, Oana M.;
Heiser, Laura M.;
Collisson, Eric A.;
Spellman, Paul T.;
Gray, Joe W.

Publication type:

Article

RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease.

Published in:

Glia (0894-1491), 2015, v. 63, n. 4, p. 531, doi. 10.1002/glia.22754

By:

Solga, Anne C.;
Pong, Winnie W.;
Walker, Jason;
Wylie, Todd;
Magrini, Vincent;
Apicelli, Anthony J.;
Griffith, Malachi;
Griffith, Obi L.;
Kohsaka, Shinichi;
Wu, Gregory F.;
Brody, David L.;
Mardis, Elaine R.;
Gutmann, David H.

Publication type:

Article

Convergent loss of PTEN leads to clinical resistance to a PI(3)Kα inhibitor.

Published in:

Nature, 2015, v. 518, n. 7538, p. 240, doi. 10.1038/nature13948

By:

Juric, Dejan;
Castel, Pau;
Griffith, Malachi;
Griffith, Obi L.;
Won, Helen H.;
Ellis, Haley;
Ebbesen, Saya H.;
Ainscough, Benjamin J.;
Ramu, Avinash;
Iyer, Gopa;
Shah, Ronak H.;
Huynh, Tiffany;
Mino-Kenudson, Mari;
Sgroi, Dennis;
Isakoff, Steven;
Thabet, Ashraf;
Elamine, Leila;
Solit, David B.;
Lowe, Scott W.;
Quadt, Cornelia

Publication type:

Article

Wikidata as a knowledge graph for the life sciences.

Published in:

eLife, 2020, p. 1, doi. 10.7554/eLife.52614

By:

WAAGMEESTER, ANDRA;
STUPP, GREGORY;
BURGSTALLER-MUEHLBACHER, SEBASTIAN;
GOOD, BENJAMIN M.;
GRIFFITH, MALACHI;
GRIFFITH, OBI L.;
HANSPERS, KRISTINA;
HERMJAKOB, HENNING;
HUDSON, TOBY S.;
HYBISKE, KEVIN;
KEATING, SARAH M.;
MANSKE, MAGNUS;
MAYERS, MICHAEL;
MIETCHEN, DANIEL;
MITRAKA, ELVIRA;
PICO, ALEXANDER R.;
PUTMAN, TIMOTHY;
RIUTTA, ANDERS;
QUERALT-ROSINACH, NURIA;
SCHRIML, LYNN M.

Publication type:

Article

DGIdb 2.0: mining clinically relevant drug-gene interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D1036, doi. 10.1093/nar/gkv1165

By:

Wagner, Alex H.;
Coffman, Adam C.;
Ainscough, Benjamin J.;
Spies, Nicholas C.;
Skidmore, Zachary L.;
Campbell, Katie M.;
Krysiak, Kilannin;
Deng Pan;
McMichael, Joshua F.;
Eldred, James M.;
Walker, Jason R.;
Wilson, Richard K.;
Mardis, Elaine R.;
Griffith, Malachi;
Griffith, Obi L.

Publication type:

Article

ORegAnno 3.0: a community-driven resource for curated regulatory annotation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D126, doi. 10.1093/nar/gkv1203

By:

Lesurf, Robert;
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Wang, Grace;
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Kasaian, Katayoon;
Jones, Steven J. M.;
Montgomery, Stephen B.;
Griffith, Obi L.

Publication type:

Article

ORegAnno: an open-access community-driven resource for regulatory annotation.

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Nucleic Acids Research, 2008, v. 36, p. D107

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Griffith, Obi L.;
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Chu, Bryan;
Kasaian, Katayoon;
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Mahony, Shaun;
Sleumer, Monica C.;
Bilenky, Mikhail;
Haeussler, Maximilian;
Griffith, Malachi;
Gallo, Steven M.;
Giardine, Belinda;
Hooghe, Bart;
Van Loo, Peter;
Blanco, Enrique;
Ticoll, Amy;
Lithwick, Stuart;
Portales-Casamar, Elodie;
Donaldson, Ian J.

Publication type:

Article

Sequence biases in large scale gene expression profiling data.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 12, p. e83, doi. 10.1093/nar/gkl404

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Siddiqui, Asim S.;
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Schnerch, Angelique;
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Jones, Steven J. M.;
Marra, Marco A.

Publication type:

Article

Unraveling the chaotic genomic landscape of primary and metastatic canine appendicular osteosarcoma with current sequencing technologies and bioinformatic approaches.

Published in:

PLoS ONE, 2021, v. 16, n. 2, p. 1, doi. 10.1371/journal.pone.0246443

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Chu, Shirley;
Skidmore, Zachary L.;
Kunisaki, Jason;
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Griffith, Malachi;
Griffith, Obi L.;
Bryan, Jeffrey N.

Publication type:

Article