Works by Griffith, Malachi

Results: 46

Looking Forward to AI and Medicine: Where Are We, and Where Are We Going?

Published in:

Missouri Medicine, 2025, v. 122, p. 34

By:

Wilcox, Adam;
Griffith, Malachi;
Griffith, Obi

Publication type:

Article

Role of the CTCF binding site in Human T-Cell Leukemia Virus-1 pathogenesis.

Published in:

PLoS Pathogens, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.ppat.1012293

By:

Joseph, Ancy;
Cheng, Xiaogang;
Harding, John;
Al-Saleem, Jacob;
Green, Patrick;
Griffith, Malachi;
Veis, Deborah;
Rauch, Daniel A.;
Ratner, Lee

Publication type:

Article

Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community‐driven standards.

Published in:

Human Mutation, 2018, v. 39, n. 11, p. 1721, doi. 10.1002/humu.23651

By:

Danos, Arpad M.;
Ritter, Deborah I.;
Wagner, Alex H.;
Krysiak, Kilannin;
Sonkin, Dmitriy;
Micheel, Christine;
McCoy, Matthew;
Rao, Shruti;
Raca, Gordana;
Boca, Simina M.;
Roy, Angshumoy;
Barnell, Erica K.;
McMichael, Joshua F.;
Kiwala, Susanna;
Coffman, Adam C.;
Kujan, Lynzey;
Kulkarni, Shashikant;
Griffith, Malachi;
Madhavan, Subha;
Griffith, Obi L.

Publication type:

Article

GenVisR: Genomic Visualizations in R.

Published in:

Bioinformatics, 2016, v. 32, n. 19, p. 3012, doi. 10.1093/bioinformatics/btw325

By:

Skidmore, Zachary L.;
Wagner, Alex H.;
Lesurf, Robert;
Campbell, Katie M.;
Kunisaki, Jason;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

Exploring the Genomic Landscape of Cancer Patient Cohorts with GenVisR.

Published in:

Current Protocols, 2021, v. 1, n. 9, p. 1, doi. 10.1002/cpz1.252

By:

Skidmore, Zachary L.;
Campbell, Katie M.;
Cotto, Kelsy C.;
Griffith, Malachi;
Griffith, Obi L.

Publication type:

Article

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Published in:

BMC Genomics, 2006, v. 7, p. 246, doi. 10.1186/1471-2164-7-246

By:

Bainbridge, Matthew N;
Warren, Rene L;
Hirst, Martin;
Romanuik, Tammy;
Zeng, Thomas;
Go, Anne;
Delaney, Allen;
Griffith, Malachi;
Hickenbotham, Matthew;
Magrini, Vincent;
Mardis, Elaine R;
Sadar, Marianne D;
Siddiqui, Asim S;
Marra, Marco A;
Jones, Steven JM

Publication type:

Article

Clonal Architectures and Driver Mutations in Metastatic Melanomas.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0111153

By:

Ding, Li;
Kim, Minjung;
Kanchi, Krishna L.;
Dees, Nathan D.;
Lu, Charles;
Griffith, Malachi;
Fenstermacher, David;
Sung, Hyeran;
Miller, Christopher A.;
Goetz, Brian;
Wendl, Michael C.;
Griffith, Obi;
Cornelius, Lynn A.;
Linette, Gerald P.;
McMichael, Joshua F.;
Sondak, Vernon K.;
Fields, Ryan C.;
Ley, Timothy J.;
Mulé, James J.;
Wilson, Richard K.

Publication type:

Article

F11R Is a Novel Monocyte Prognostic Biomarker for Malignant Glioma.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077571

By:

Pong, Winnie W.;
Walker, Jason;
Wylie, Todd;
Magrini, Vincent;
Luo, Jingqin;
Emnett, Ryan J.;
Choi, Jaebok;
Cooper, Matthew L.;
Griffith, Malachi;
Griffith, Obi L.;
Rubin, Joshua B.;
Fuller, Gregory N.;
Piwnica-Worms, David;
Feng, Xi;
Hambardzumyan, Dolores;
DiPersio, John F.;
Mardis, Elaine R.;
Gutmann, David H.

Publication type:

Article

Epigenomic regulation of human T-cell leukemia virus by chromatin-insulator CTCF.

Published in:

PLoS Pathogens, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.ppat.1009577

By:

Cheng, Xiaogang;
Joseph, Ancy;
Castro, Victor;
Chen-Liaw, Alice;
Skidmore, Zachary;
Payton, Jacqueline E.;
Ratner, Lee;
Edwards, John R.;
Ueno, Takaharu;
Fujisawa, Jun-ichi;
Rauch, Daniel A.;
Challen, Grant A.;
Martinez, Michael P.;
Green, Patrick;
Griffith, Malachi

Publication type:

Article

Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia.

Published in:

JAMA: Journal of the American Medical Association, 2015, v. 314, n. 8, p. 811, doi. 10.1001/jama.2015.9643

By:

Klco, Jeffery M.;
Miller, Christopher A.;
Griffith, Malachi;
Petti, Allegra;
Spencer, David H.;
Ketkar-Kulkarni, Shamika;
Wartman, Lukas D.;
Christopher, Matthew;
Lamprecht, Tamara L.;
Helton, Nicole M.;
Duncavage, Eric J.;
Payton, Jacqueline E.;
Baty, Jack;
Heath, Sharon E.;
Griffith, Obi L.;
Dong Shen;
Hundal, Jasreet;
Gue Su Chang;
Fulton, Robert;
O'Laughlin, Michelle

Publication type:

Article

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database.

Published in:

Genome Medicine, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13073-019-0686-y

By:

Lever, Jake;
Jones, Martin R.;
Danos, Arpad M.;
Krysiak, Kilannin;
Bonakdar, Melika;
Grewal, Jasleen K.;
Culibrk, Luka;
Griffith, Obi L.;
Griffith, Malachi;
Jones, Steven J. M.

Publication type:

Article

Best practices for bioinformatic characterization of neoantigens for clinical utility.

Published in:

Genome Medicine, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13073-019-0666-2

By:

Richters, Megan M.;
Xia, Huiming;
Campbell, Katie M.;
Gillanders, William E.;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07407-3

By:

Griffith, Obi L.;
Spies, Nicholas C.;
Anurag, Meenakshi;
Griffith, Malachi;
Luo, Jingqin;
Tu, Dongsheng;
Yeo, Belinda;
Kunisaki, Jason;
Miller, Christopher A;
Krysiak, Kilannin;
Hundal, Jasreet;
Ainscough, Benjamin J;
Skidmore, Zachary L.;
Campbell, Katie;
Kumar, Runjun;
Fronick, Catrina;
Cook, Lisa;
Snider, Jacqueline E.;
Davies, Sherri;
Kavuri, Shyam M.

Publication type:

Article

The prognostic effects of somatic mutations in ER-positive breast cancer.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05914-x

By:

Griffith, Obi L.;
Spies, Nicholas C.;
Anurag, Meenakshi;
Griffith, Malachi;
Luo, Jingqin;
Tu, Dongsheng;
Yeo, Belinda;
Kunisaki, Jason;
Miller, Christopher A;
Krysiak, Kilannin;
Hundal, Jasreet;
Ainscough, Benjamin J;
Skidmore, Zachary L.;
Campbell, Katie;
Kumar, Runjun;
Fronick, Catrina;
Cook, Lisa;
Snider, Jacqueline E.;
Davies, Sherri;
Kavuri, Shyam M.

Publication type:

Article

Interaction of Cyclin-Dependent Kinase 12/CrkRS with Cyclin K1 Is Required for the Phosphorylation of the C-Terminal Domain of RNA Polymerase II.

Published in:

Molecular & Cellular Biology, 2012, v. 32, n. 22, p. 4691, doi. 10.1128/MCB.06267-11

By:

Grace Cheng, S.-W.;
Kuzyk, Michael A.;
Moradian, Annie;
Ichu, Taka-Aki;
Chang, Vicky C.-D.;
Tien, Jerry F.;
Vollett, Sarah E.;
Griffith, Malachi;
Marra, Marco A.;
Morin, Gregg B.

Publication type:

Article

Single exon-resolution targeted chromosomal microarray analysis of known and candidate intellectual disability genes.

Published in:

European Journal of Human Genetics, 2014, v. 22, n. 6, p. 792, doi. 10.1038/ejhg.2013.248

By:

Tucker, Tracy;
Zahir, Farah R;
Griffith, Malachi;
Delaney, Allen;
Chai, David;
Tsang, Erica;
Lemyre, Emmanuelle;
Dobrzeniecka, Sylvia;
Marra, Marco;
Eydoux, Patrice;
Langlois, Sylvie;
Hamdan, Fadi F;
Michaud, Jacques L;
Friedman, Jan M

Publication type:

Article

Single-Cell Transcriptomic Analysis of Kaposi Sarcoma.

Published in:

PLoS Pathogens, 2025, v. 21, n. 4, p. 1, doi. 10.1371/journal.ppat.1012233

By:

Rauch, Daniel A.;
Ramos, Paula Valiño;
Khanfar, Mariam;
Harding, John;
Joseph, Ancy;
Fahad, Anam;
Simonson, Paul;
Risch, Isabel;
Griffith, Obi;
Griffith, Malachi;
Ratner, Lee

Publication type:

Article

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004393

By:

Griffith, Malachi;
Walker, Jason R.;
Spies, Nicholas C.;
Ainscough, Benjamin J.;
Griffith, Obi L.

Publication type:

Article

Genome Modeling System: A Knowledge Management Platform for Genomics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.pcbi.1004274

By:

Griffith, Malachi;
Griffith, Obi L.;
Smith, Scott M.;
Ramu, Avinash;
Callaway, Matthew B.;
Brummett, Anthony M.;
Kiwala, Michael J.;
Coffman, Adam C.;
Regier, Allison A.;
Oberkfell, Ben J.;
Sanderson, Gabriel E.;
Mooney, Thomas P.;
Nutter, Nathaniel G.;
Belter, Edward A.;
Du, Feiyu;
Long, Robert L.;
Abbott, Travis E.;
Ferguson, Ian T.;
Morton, David L.;
Burnett, Mark M.

Publication type:

Article

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003665

By:

Miller, Christopher A.;
White, Brian S.;
Dees, Nathan D.;
Griffith, Malachi;
Welch, John S.;
Griffith, Obi L.;
Vij, Ravi;
Tomasson, Michael H.;
Graubert, Timothy A.;
Walter, Matthew J.;
Ellis, Matthew J.;
Schierding, William;
DiPersio, John F.;
Ley, Timothy J.;
Mardis, Elaine R.;
Wilson, Richard K.;
Ding, Li

Publication type:

Article

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001138

By:

McPherson, Andrew;
Hormozdiari, Fereydoun;
Zayed, Abdalnasser;
Giuliany, Ryan;
Ha, Gavin;
Sun, Mark G. F.;
Griffith, Malachi;
Moussavi, Alireza Heravi;
Janine6Senz;
Melnyk, Nataliya;
Pacheco, Marina;
Marra, Marco A.;
Hirst, Martin;
Nielsen, Torsten O.;
Sahinalp, S. Cenk;
Huntsman, David;
Shah, Sohrab P.

Publication type:

Article

Single-cell T-cell receptor repertoire profiling in dogs.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06174-w

By:

Hoang, My H.;
Skidmore, Zachary L.;
Rindt, Hans;
Chu, Shirley;
Fisk, Bryan;
Foltz, Jennifer A.;
Fronick, Catrina;
Fulton, Robert;
Zhou, Mingyi;
Bivens, Nathan J.;
Reinero, Carol N.;
Fehniger, Todd A.;
Griffith, Malachi;
Bryan, Jeffrey N.;
Griffith, Obi L.

Publication type:

Article

DGIdb: mining the druggable genome.

Published in:

Nature Methods, 2013, v. 10, n. 12, p. 1209, doi. 10.1038/nmeth.2689

By:

Griffith, Malachi;
Griffith, Obi L;
Coffman, Adam C;
Weible, James V;
McMichael, Josh F;
Spies, Nicholas C;
Koval, James;
Das, Indraniel;
Callaway, Matthew B;
Eldred, James M;
Miller, Christopher A;
Subramanian, Janakiraman;
Govindan, Ramaswamy;
Kumar, Runjun D;
Bose, Ron;
Ding, Li;
Walker, Jason R;
Larson, David E;
Dooling, David J;
Smith, Scott M

Publication type:

Article

De novo assembly and analysis of RNA-seq data.

Published in:

Nature Methods, 2010, v. 7, n. 11, p. 909, doi. 10.1038/nmeth.1517

By:

Robertson, Gordon;
Schein, Jacqueline;
Chiu, Readman;
Corbett, Richard;
Field, Matthew;
Jackman, Shaun D.;
Mungall, Karen;
Sam Lee;
Okada, Hisanaga Mark;
Qian, Jenny Q.;
Griffith, Malachi;
Raymond, Anthony;
Thiessen, Nina;
Cezard, Timothee;
Butterfield, Yaron S.;
Newsome, Richard;
Chan, Simon K.;
Rong She;
Varhol, Richard;
Kamoh, Baljit

Publication type:

Article

Alternative expression analysis by RNA sequencing.

Published in:

Nature Methods, 2010, v. 7, n. 10, p. 843, doi. 10.1038/nmeth.1503

By:

Griffith, Malachi;
Griffith, Obi L.;
Mwenifumbo, Jill;
Goya, Rodrigo;
Morrissy, A Sorana;
Morin, Ryan D;
Corbett, Richard;
Tang, Michelle J.;
Ying-Chen Hou;
Pugh, Trevor J.;
Robertson, Gordon;
Chittaranjan, Suganthi;
Ally, Adrian;
Asano, Jennifer K.;
Chan, Susanna Y.;
Li, Haiyan I.;
McDonald, Helen;
Teague, Kevin;
Yongjun Zhao;
Zeng, Thomas

Publication type:

Article

ALEXA: a microarray design platform for alternative expression analysis.

Published in:

2008

By:

Griffith, Malachi;
Tang, Michelle J;
Griffith, Obi L;
Morin, Ryan D;
Chan, Susanna Y;
Asano, Jennifer K;
Zeng, Thomas;
Flibotte, Stephane;
Ally, Adrian;
Baross, Agnes;
Hirst, Martin;
Jones, Steven J M;
Morin, Gregg B;
Tai, Isabella T;
Marra, Marco A

Publication type:

Letter

DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1227, doi. 10.1093/nar/gkad1040

By:

Cannon, Matthew;
Stevenson, James;
Stahl, Kathryn;
Basu, Rohit;
Coffman, Adam;
Kiwala, Susanna;
McMichael, Joshua F;
Kuzma, Kori;
Morrissey, Dorian;
Cotto, Kelsy;
Mardis, Elaine R;
Griffith, Obi L;
Griffith, Malachi;
Wagner, Alex H

Publication type:

Article

DGIdb 3.0: a redesign and expansion of the drug–gene interaction database.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1068, doi. 10.1093/nar/gkx1143

By:

Cotto, Kelsy C;
Wagner, Alex H;
Feng, Yang-Yang;
Kiwala, Susanna;
Coffman, Adam C;
Spies, Gregory;
Wollam, Alex;
Spies, Nicholas C;
Griffith, Obi L;
Griffith, Malachi

Publication type:

Article

Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers.

Published in:

Nature Communications, 2016, v. 7, n. 8, p. 12498, doi. 10.1038/ncomms12498

By:

Miller, Christopher A.;
Gindin, Yevgeniy;
Lu, Charles;
Griffith, Obi L;
Griffith, Malachi;
Shen, Dong;
Hoog, Jeremy;
Li, Tiandao;
Larson, David E.;
Watson, Mark;
Davies, Sherri R;
Hunt, Kelly;
Suman, Vera J.;
Snider, Jacqueline;
Walsh, Thomas;
Colditz, Graham A.;
DeSchryver, Katherine;
Wilson, Richard K.;
Mardis, Elaine R.;
Ellis, Matthew J.

Publication type:

Article

Epigenetic and transcriptional determinants of the human breast.

Published in:

Nature Communications, 2015, v. 6, n. 2, p. 6351, doi. 10.1038/ncomms7351

By:

Gascard, Philippe;
Bilenky, Misha;
Sigaroudinia, Mahvash;
Zhao, Jianxin;
Li, Luolan;
Carles, Annaick;
Delaney, Allen;
Tam, Angela;
Kamoh, Baljit;
Cho, Stephanie;
Griffith, Malachi;
Chu, Andy;
Robertson, Gordon;
Cheung, Dorothy;
Li, Irene;
Heravi-Moussavi, Alireza;
Moksa, Michelle;
Mingay, Matthew;
Hussainkhel, Angela;
Davis, Brad

Publication type:

Article

A macrophage-cell model of HIV latency reveals the unusual importance of the bromodomain axis.

Published in:

Virology Journal, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12985-024-02343-9

By:

Kisaka, Javan K.;
Rauch, Daniel;
Griffith, Malachi;
Kyei, George B.

Publication type:

Article

Normalization of drug and therapeutic concepts with Thera-Py.

Published in:

JAMIA Open, 2023, v. 6, n. 4, p. 1, doi. 10.1093/jamiaopen/ooad093

By:

Cannon, Matthew;
Stevenson, James;
Kuzma, Kori;
Kiwala, Susanna;
Warner, Jeremy L;
Griffith, Obi L;
Griffith, Malachi;
Wagner, Alex H

Publication type:

Article

Modeling precision treatment of breast cancer.

Published in:

Genome Biology, 2013, v. 14, n. 10, p. R110, doi. 10.1186/gb-2013-14-10-r110

By:

Daemen, Anneleen;
Griffith, Obi L;
Heiser, Laura M;
Wang, Nicholas J;
Enache, Oana M;
Sanborn, Zachary;
Pepin, Francois;
Durinck, Steffen;
Korkola, James E;
Griffith, Malachi;
Joe S Hur;
Nam Huh;
Jongsuk Chung;
Cope, Leslie;
Fackler, Mary Jo;
Umbricht, Christopher;
Sukumar, Saraswati;
Seth, Pankaj;
Sukhatme, Vikas P;
Jakkula, Lakshmi R

Publication type:

Article

pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection.

Published in:

Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01384-7

By:

Xia, Huiming;
Hoang, My H.;
Schmidt, Evelyn;
Kiwala, Susanna;
McMichael, Joshua;
Skidmore, Zachary L.;
Fisk, Bryan;
Song, Jonathan J.;
Hundal, Jasreet;
Mooney, Thomas;
Walker, Jason R.;
Goedegebuure, S. Peter;
Miller, Christopher A.;
Gillanders, William E.;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

Personalized ctDNA micro-panels can monitor and predict clinical outcomes for patients with triple-negative breast cancer.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-20928-8

By:

Barnell, Erica K.;
Fisk, Bryan;
Skidmore, Zachary L.;
Cotto, Kelsy C.;
Basu, Anamika;
Anand, Aparna;
Richters, Megan M.;
Luo, Jingqin;
Fronick, Catrina;
Anurag, Meenakshi;
Fulton, Robert;
Ellis, Matthew J.;
Griffith, Obi L.;
Griffith, Malachi;
Ademuyiwa, Foluso O.

Publication type:

Article

Novel Avian Influenza H7N3 Strain Outbreak, British Columbia.

Published in:

Emerging Infectious Diseases, 2004, v. 10, n. 12, p. 2192, doi. 10.3201/eid1012.040743

By:

Hirst, Martin;
Astell, Caroline R.;
Griffith, Malachi;
Coughlin, Shaun M.;
Moksa, Michelle;
Zeng, Thomas;
Smailus, Duane E.;
Holt, Robert A.;
Jones, Steven;
Marra, Marco A.;
Petric, Martin;
Krajden, Mel;
Lawrence, David;
Mak, Annie;
Chow, Ron;
Skowronski, Danuta M.;
Tweed, S. Aleina;
SweeHan Goh;
Brunham, Robert C.;
Robinson, John

Publication type:

Article

Clinical implications of neoepitope landscapes for adult and pediatric cancers.

Published in:

Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0470-9

By:

Yang-Yang Feng;
Griffith, Obi L.;
Griffith, Malachi

Publication type:

Article

pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens.

Published in:

Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0264-5

By:

Hundal, Jasreet;
Carreno, Beatriz M.;
Petti, Allegra A.;
Linette, Gerald P.;
Griffith, Obi L.;
Mardis, Elaine R.;
Griffith, Malachi

Publication type:

Article

RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease.

Published in:

Glia (0894-1491), 2015, v. 63, n. 4, p. 531, doi. 10.1002/glia.22754

By:

Solga, Anne C.;
Pong, Winnie W.;
Walker, Jason;
Wylie, Todd;
Magrini, Vincent;
Apicelli, Anthony J.;
Griffith, Malachi;
Griffith, Obi L.;
Kohsaka, Shinichi;
Wu, Gregory F.;
Brody, David L.;
Mardis, Elaine R.;
Gutmann, David H.

Publication type:

Article

Convergent loss of PTEN leads to clinical resistance to a PI(3)Kα inhibitor.

Published in:

Nature, 2015, v. 518, n. 7538, p. 240, doi. 10.1038/nature13948

By:

Juric, Dejan;
Castel, Pau;
Griffith, Malachi;
Griffith, Obi L.;
Won, Helen H.;
Ellis, Haley;
Ebbesen, Saya H.;
Ainscough, Benjamin J.;
Ramu, Avinash;
Iyer, Gopa;
Shah, Ronak H.;
Huynh, Tiffany;
Mino-Kenudson, Mari;
Sgroi, Dennis;
Isakoff, Steven;
Thabet, Ashraf;
Elamine, Leila;
Solit, David B.;
Lowe, Scott W.;
Quadt, Cornelia

Publication type:

Article

Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.

Published in:

Nature, 2011, v. 476, n. 7360, p. 298, doi. 10.1038/nature10351

By:

Morin, Ryan D.;
Mendez-Lago, Maria;
Mungall, Andrew J.;
Goya, Rodrigo;
Mungall, Karen L.;
Corbett, Richard D.;
Johnson, Nathalie A.;
Severson, Tesa M.;
Chiu, Readman;
Field, Matthew;
Jackman, Shaun;
Krzywinski, Martin;
Scott, David W.;
Trinh, Diane L.;
Tamura-Wells, Jessica;
Li, Sa;
Firme, Marlo R.;
Rogic, Sanja;
Griffith, Malachi;
Chan, Susanna

Publication type:

Article

Wikidata as a knowledge graph for the life sciences.

Published in:

eLife, 2020, p. 1, doi. 10.7554/eLife.52614

By:

WAAGMEESTER, ANDRA;
STUPP, GREGORY;
BURGSTALLER-MUEHLBACHER, SEBASTIAN;
GOOD, BENJAMIN M.;
GRIFFITH, MALACHI;
GRIFFITH, OBI L.;
HANSPERS, KRISTINA;
HERMJAKOB, HENNING;
HUDSON, TOBY S.;
HYBISKE, KEVIN;
KEATING, SARAH M.;
MANSKE, MAGNUS;
MAYERS, MICHAEL;
MIETCHEN, DANIEL;
MITRAKA, ELVIRA;
PICO, ALEXANDER R.;
PUTMAN, TIMOTHY;
RIUTTA, ANDERS;
QUERALT-ROSINACH, NURIA;
SCHRIML, LYNN M.

Publication type:

Article

DGIdb 2.0: mining clinically relevant drug-gene interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D1036, doi. 10.1093/nar/gkv1165

By:

Wagner, Alex H.;
Coffman, Adam C.;
Ainscough, Benjamin J.;
Spies, Nicholas C.;
Skidmore, Zachary L.;
Campbell, Katie M.;
Krysiak, Kilannin;
Deng Pan;
McMichael, Joshua F.;
Eldred, James M.;
Walker, Jason R.;
Wilson, Richard K.;
Mardis, Elaine R.;
Griffith, Malachi;
Griffith, Obi L.

Publication type:

Article

ORegAnno 3.0: a community-driven resource for curated regulatory annotation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D126, doi. 10.1093/nar/gkv1203

By:

Lesurf, Robert;
Cotto, Kelsy C.;
Wang, Grace;
Griffith, Malachi;
Kasaian, Katayoon;
Jones, Steven J. M.;
Montgomery, Stephen B.;
Griffith, Obi L.

Publication type:

Article

ORegAnno: an open-access community-driven resource for regulatory annotation.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D107

By:

Griffith, Obi L.;
Montgomery, Stephen B.;
Bernier, Bridget;
Chu, Bryan;
Kasaian, Katayoon;
Aerts, Stein;
Mahony, Shaun;
Sleumer, Monica C.;
Bilenky, Mikhail;
Haeussler, Maximilian;
Griffith, Malachi;
Gallo, Steven M.;
Giardine, Belinda;
Hooghe, Bart;
Van Loo, Peter;
Blanco, Enrique;
Ticoll, Amy;
Lithwick, Stuart;
Portales-Casamar, Elodie;
Donaldson, Ian J.

Publication type:

Article

Unraveling the chaotic genomic landscape of primary and metastatic canine appendicular osteosarcoma with current sequencing technologies and bioinformatic approaches.

Published in:

PLoS ONE, 2021, v. 16, n. 2, p. 1, doi. 10.1371/journal.pone.0246443

By:

Chu, Shirley;
Skidmore, Zachary L.;
Kunisaki, Jason;
Walker, Jason R.;
Griffith, Malachi;
Griffith, Obi L.;
Bryan, Jeffrey N.

Publication type:

Article