Works matching AU Gray, Joe

Results: 173

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1434, doi. 10.1038/nsmb.2699

By:

Lovci, Michael T;
Ghanem, Dana;
Marr, Henry;
Arnold, Justin;
Gee, Sherry;
Parra, Marilyn;
Liang, Tiffany Y;
Stark, Thomas J;
Gehman, Lauren T;
Hoon, Shawn;
Massirer, Katlin B;
Pratt, Gabriel A;
Black, Douglas L;
Gray, Joe W;
Conboy, John G;
Yeo, Gene W

Publication type:

Article

Causal network inference using biochemical kinetics.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i468, doi. 10.1093/bioinformatics/btu452

By:

Oates, Chris J.;
Dondelinger, Frank;
Bayani, Nora;
Korkola, James;
Gray, Joe W.;
Mukherjee, Sach

Publication type:

Article

Bayesian Inference of Signaling Network Topology in a Cancer Cell Line.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2804, doi. 10.1093/bioinformatics/bts514

By:

Hill, Steven M.;
Lu, Yiling;
Molina, Jennifer;
Heiser, Laura M.;
Spellman, Paul T.;
Speed, Terence P.;
Gray, Joe W.;
Mills, Gordon B.;
Mukherjee, Sach

Publication type:

Article

Sparse multitask regression for identifying common mechanism of response to therapeutic targets.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i97, doi. 10.1093/bioinformatics/btq181

By:

Zhang, Kai;
Gray, Joe W.;
Parvin, Bahram

Publication type:

Article

Sparse combinatorial inference with an application in cancer biology.

Published in:

Bioinformatics, 2009, v. 25, n. 2, p. 265, doi. 10.1093/bioinformatics/btn611

By:

Sach Mukherjee;
Steven Pelech;
Richard M. Neve;
Wen-Lin Kuo;
Safiyyah Ziyad;
Paul T. Spellman;
Joe W. Gray;
Terence P. Speed

Publication type:

Article

A framework for multiplex imaging optimization and reproducible analysis.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03368-y

By:

Eng, Jennifer;
Bucher, Elmar;
Hu, Zhi;
Zheng, Ting;
Gibbs, Summer L.;
Chin, Koei;
Gray, Joe W.

Publication type:

Article

A multi-encoder variational autoencoder controls multiple transformational features in single-cell image analysis.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03218-x

By:

Ternes, Luke;
Dane, Mark;
Gross, Sean;
Labrie, Marilyne;
Mills, Gordon;
Gray, Joe;
Heiser, Laura;
Chang, Young Hwan

Publication type:

Article

Expanding the Diversity of Imaging-Based RNAi Screen Applications Using Cell Spot Microarrays.

Published in:

Microarrays (2076-3905), 2013, v. 2, n. 2, p. 97, doi. 10.3390/microarrays2020097

By:

Rantala, Juha K.;
Sunjong Kwon;
Korkola, James;
Gray, Joe W.

Publication type:

Article

The Road to Redemption (Book Review).

Published in:

1985

By:

Taylor, Joe Gray

Publication type:

Book Review

Lincoln and Black Freedom (Book Review).

Published in:

1983

By:

Taylor, Joe Gray

Publication type:

Book Review

Abraham Lincoln and Reconstruction (Book Review).

Published in:

1979

By:

Taylor, Joe Gray

Publication type:

Book Review

Arkansas and Reconstruction (Book Review).

Published in:

1977

By:

Taylor, Joe Gray

Publication type:

Book Review

Targeting mitochondria in cancer therapy could provide a basis for the selective anti-cancer activity.

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0205623

By:

Rozanov, Dmitri;
Cheltsov, Anton;
Nilsen, Aaron;
Boniface, Christopher;
Forquer, Isaac;
Korkola, James;
Gray, Joe;
Tyner, Jeffrey;
Tognon, Cristina E.;
Mills, Gordon B.;
Spellman, Paul

Publication type:

Article

Lack of acquired resistance in HER2-positive breast cancer cells after long-term HER2 siRNA nanoparticle treatment.

Published in:

PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0198141

By:

Gu, Shenda;
Ngamcherdtrakul, Worapol;
Reda, Moataz;
Hu, Zhi;
Gray, Joe W.;
Yantasee, Wassana

Publication type:

Article

High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarrays.

Published in:

BMC Medical Genomics, 2009, v. 2, p. 1, doi. 10.1186/1755-8794-2-8

By:

Yuker Wang;
Carlton, Victoria E. H.;
Karlin-Neumann, George;
Sapolsky, Ronald;
Li Zhang;
Moorhead, Martin;
Wang, Zhigang C.;
Richardson, Andrea L.;
Warren, Robert;
Walther, Axel;
Bondy, Melissa;
Sahin, Aysegul;
Krahe, Ralf;
Tuna, Musaffe;
Thompson, Patricia A.;
Spellman, Paul T.;
Gray, Joe W.;
Mills, Gordon B.;
Faham, Malek

Publication type:

Article

Reply to Colorectal cancer classification based on gene expression is not associated with FOLFIRI response.

Published in:

Nature Medicine, 2014, v. 20, n. 11, p. 1231, doi. 10.1038/nm.3742

By:

Sadanandam, Anguraj;
Gray, Joe;
Hanahan, Douglas

Publication type:

Article

Detecting cancer by monitoring circulating tumor DNA.

Published in:

Nature Medicine, 2014, v. 20, n. 5, p. 474, doi. 10.1038/nm.3564

By:

Spellman, Paul T;
Gray, Joe W

Publication type:

Article

A colorectal cancer classification system that associates cellular phenotype and responses to therapy.

Published in:

Nature Medicine, 2013, v. 19, n. 5, p. 619, doi. 10.1038/nm.3175

By:

Sadanandam, Anguraj;
Lyssiotis, Costas A;
Homicsko, Krisztian;
Collisson, Eric A;
Gibb, William J;
Wullschleger, Stephan;
Ostos, Liliane C Gonzalez;
Lannon, William A;
Grotzinger, Carsten;
Del Rio, Maguy;
Lhermitte, Benoit;
Olshen, Adam B;
Wiedenmann, Bertram;
Cantley, Lewis C;
Gray, Joe W;
Hanahan, Douglas

Publication type:

Article

A new treasure in the breast cancer gene hunt.

Published in:

Nature Medicine, 2011, v. 17, n. 4, p. 422, doi. 10.1038/nm0411-422

By:

Spellman, Paul;
Gray, Joe

Publication type:

Article

Subtypes of pancreatic ductal adenocarcinoma and their differing responses to therapy.

Published in:

Nature Medicine, 2011, v. 17, n. 4, p. 500, doi. 10.1038/nm.2344

By:

Collisson, Eric A.;
Sadanandam, Anguraj;
Olson, Peter;
Gibb, William J.;
Truitt, Morgan;
Gu, Shenda;
Cooc, Janine;
Weinkle, Jennifer;
Kim, Grace E.;
Jakkula, Lakshmi;
Feiler, Heidi S.;
Ko, Andrew H.;
Olshen, Adam B.;
Danenberg, Kathleen L.;
Tempero, Margaret A.;
Spellman, Paul T.;
Hanahan, Douglas;
Gray, Joe W.

Publication type:

Article

The RAB25 small GTPase determines aggressiveness of ovarian and breast cancers.

Published in:

Nature Medicine, 2004, v. 10, n. 11, p. 1251, doi. 10.1038/nm1125

By:

Cheng, Kwai Wa;
Lahad, John P;
Kuo, Wen-lin;
Lapuk, Anna;
Yamada, Kyosuke;
Auersperg, Nelly;
Liu, Jinsong;
Smith-McCune, Karen;
Lu, Karen H;
Fishman, David;
Gray, Joe W;
Mills, Gordon B

Publication type:

Article

Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway.

Published in:

Nature Genetics, 2015, v. 47, n. 10, p. 1194, doi. 10.1038/ng.3382

By:

Garrido, Maria;
Botton, Thomas;
Talevich, Eric;
Yeh, Iwei;
Wang, Nicholas J;
Kakavand, Hojabr;
Mann, Graham J;
Thompson, John F;
Olshen, Adam B;
Gagnon, Alexander;
Gray, Joe W;
Scolyer, Richard A;
Murali, Rajmohan;
Bastian, Boris C;
Sanborn, J Zachary;
Chung, Jongsuk;
Huh, Nam;
Wiesner, Thomas;
Shain, A Hunter;
Roy, Ritu

Publication type:

Article

ESR1 gene amplification in breast cancer: a common phenomenon?

Published in:

2008

By:

Brown, Lindsay A.;
Hoog, Jeremy;
Suet-Feung Chin;
Yu Tao;
Zayed, Abd Alnaser;
Koei Chin;
Teschendorff, Andrew E.;
Quackenbush, John F.;
Marioni, John C.;
Leung, Samuel;
Perou, Charles M.;
Neilsen, Torsten O.;
Ellis, Matthew;
Gray, Joe W.;
Bernard, Philip S.;
Huntsman, David G.;
Caldas, Carlos

Publication type:

Letter

The melanocyte differentiation program predisposes to metastasis after neoplastic transformation.

Published in:

Nature Genetics, 2005, v. 37, n. 10, p. 1047, doi. 10.1038/ng1634

By:

Gupta, Piyush B.;
Kuperwasser, Charlotte;
Brunet, Jean-Philippe;
Ramaswamy, Sridhar;
Wen-Lin Kuo;
Gray, Joe W.;
Naber, Stephen P.;
Weinberg, Robert A.

Publication type:

Article

In situ analyses of genome instability in breast cancer.

Published in:

Nature Genetics, 2004, v. 36, n. 9, p. 984, doi. 10.1038/ng1409

By:

Chin, Koei;
de Solorzano, Carlos Ortiz;
Knowles, David;
Jones, Arthur;
Chou, William;
Rodriguez, Enrique Garcia;
Wen-Lin Kuo;
Ljung, Britt-Marie;
Chew, Karen;
Myambo, Kenneth;
Miranda, Monica;
Krig, Sheryl;
Garbe, James;
Stampfer, Martha;
Yaswen, Paul;
Gray, Joe W.;
Lockett, Stephen J.

Publication type:

Article

Chromosome aberrations in solid tumors.

Published in:

Nature Genetics, 2003, v. 34, n. 4, p. 369, doi. 10.1038/ng1215

By:

Albertson, Donna G.;
Collins, Colin;
McCormick, Frank;
Gray, Joe W.

Publication type:

Article

The genetics and genomics of cancer.

Published in:

Nature Genetics, 2003, v. 33, p. 238, doi. 10.1038/ng1107

By:

Balmain, Allan;
Gray, Joe;
Ponder, Bruce

Publication type:

Article

Protein elongation factor EEF1A2 is a putative oncogene in ovarian cancer.

Published in:

Nature Genetics, 2002, v. 31, n. 3, p. 301, doi. 10.1038/ng904

By:

Anand, Nisha;
Murthy, Sabita;
Amann, Gudrun;
Wernick, Meredith;
Porter, Lisa A.;
Cukier, I. Howard;
Collins, Colin;
Gray, Joe W.;
Diebold, Joachim;
Demetrick, Doug J.;
Lee, Jonathan M.

Publication type:

Article

Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas.

Published in:

Nature Genetics, 2001, v. 29, n. 4, p. 459, doi. 10.1038/ng771

By:

Hodgson, Graeme;
Hager, Jeffrey H.;
Volik, Stas;
Hariono, Sujatmi;
Wernick, Meredith;
Moore, Dan;
Albertson, Donna G.;
Pinkel, Daniel;
Collins, Colin;
Hanahan, Douglas;
Gray, Joe W.

Publication type:

Article

Assembly of microarrays for genome-wide measurement of DNA copy number.

Published in:

Nature Genetics, 2001, v. 29, n. 3, p. 263, doi. 10.1038/ng754

By:

Snijders, Antoine M.;
Nowak, Norma;
Segraves, Richard;
Blackwood, Stephanie;
Brown, Nils;
Conroy, Jeffrey;
Hamilton, Greg;
Hindle, Anna Katherine;
Huey, Bing;
Kimura, Karen;
Law, Sindy;
Myambo, Ken;
Palmer, Joel;
Ylstra, Bauke;
Yue, Jingzhu Pearl;
Gray, Joe W.;
Jain, Ajay N.;
Pinkel, Daniel;
Albertson, Donna G.

Publication type:

Article

A 20q13.2 cancer amplicon: novel sequence analysis tools.

Published in:

2001

By:

Volik, Stanislav;
Gray, Joe;
Kowbel, David;
Collins, Colin

Publication type:

Abstract

Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene.

Published in:

Nature Genetics, 2000, v. 25, n. 2, p. 144, doi. 10.1038/75985

By:

Albertson, Donna G.;
Ylstra, Bauke;
Segraves, Richard;
Collins, Colin;
Dairkee, Shanaz H.;
Kowbel, David;
Kuo, Wen-Lin;
Gray, Joe W.;
Pinkel, Daniel

Publication type:

Article

High-resolution assessment of DNA loss in RIP-Tag mouse pancreatic carcinomas using comparative genomic hybridization to microarrays.

Published in:

1999

By:

Hodgson, Graeme;
Hager, Jeff;
Collins, Colin;
Albertson, Donna;
Pinkel, Daniel;
Hanahan, Doug;
Gray, Joe W.

Publication type:

Abstract

PIK3CA is implicated as an oncogene in ovarian cancer.

Published in:

Nature Genetics, 1999, v. 21, n. 1, p. 99, doi. 10.1038/5042

By:

Shayesteh, Laleh;
Lu, Yiling;
Kuo, Wen-Lin;
Baldocchi, Russell;
Godfrey, Tony;
Collins, Colin;
Pinkel, Daniel;
Powell, Bethan;
Mills, Gordon B.;
Gray, Joe W.

Publication type:

Article

Tumour amplified kinase STK15/BTAK induces centrosome amplification, aneuploidy and transformation.

Published in:

Nature Genetics, 1998, v. 20, n. 2, p. 189, doi. 10.1038/2496

By:

Zhou, Hongyi;
Kuang, Jian;
Zhong, Ling;
Kuo, Wen-lin;
Gray, Joe;
Sahin, Aysegul;
Brinkley, Bill;
Sen, Subrata

Publication type:

Article

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Published in:

Nature Genetics, 1998, v. 20, n. 2, p. 207, doi. 10.1038/2524

By:

Pinkel, Daniel;
Segraves, Richard;
Sudar, Damir;
Clark, Steven;
Poole, Ian;
Kowbel, David;
Collins, Colin;
Kuo, Wen-Lin;
Chen, Chira;
Zhai, Ye;
Dairkee, Shanaz H.;
Ljung, Britt-marie;
Gray, Joe W.;
Albertson, Donna G.

Publication type:

Article

Identification of PADI2 as a potential breast cancer biomarker and therapeutic target.

Published in:

BMC Cancer, 2012, v. 12, n. 1, p. 1, doi. 10.1186/1471-2407-12-500

By:

McElwee, John L.;
Mohanan, Sunish;
Griffith, Obi L.;
Breuer, Heike C.;
Anguish, Lynne J.;
Cherrington, Brian D.;
Palmer, Ashley M.;
Howe, Louise R.;
Subramanian, Venkataraman;
Causey, Corey P.;
Thompson, Paul R.;
Gray, Joe W.;
Coonrod, Scott A.

Publication type:

Article

Identification of PADI2 as a potential breast cancer biomarker and therapeutic target.

Published in:

2012

By:

McElwee, John L;
Mohanan, Sunish;
Griffith, Obi L;
Breuer, Heike C;
Anguish, Lynne J;
Cherrington, Brian D;
Palmer, Ashley M;
Howe, Louise R;
Subramanian, Venkataraman;
Causey, Corey P;
Thompson, Paul R;
Gray, Joe W;
Coonrod, Scott A

Publication type:

journal article

AFP, PIVKAII, GP3, SCCA-1 and follisatin as surveillance biomarkers for hepatocellular cancer in non-alcoholic and alcoholic fatty liver disease.

Published in:

2008

By:

Beale G;
Chattopadhyay D;
Gray J;
Stewart S;
Hudson M;
Day C;
Trerotoli P;
Giannelli G;
Manas D;
Reeves H;
Beale, Gary;
Chattopadhyay, Dipankar;
Gray, Joe;
Stewart, Stephen;
Hudson, Mark;
Day, Christopher;
Trerotoli, Paolo;
Giannelli, Gianluigi;
Manas, Derek;
Reeves, Helen

Publication type:

journal article

AFP, PIVKAII, GP3, SCCA-1 and follisatin as surveillance biomarkers for hepatocellular cancer in non-alcoholic and alcoholic fatty liver disease.

Published in:

BMC Cancer, 2008, v. 8, p. 1, doi. 10.1186/1471-2407-8-200

By:

Beale, Gary;
Chattopadhyay, Dipankar;
Gray, Joe;
Stewart, Stephen;
Hudson, Mark;
Day, Christopher;
Trerotoli, Paolo;
Giannelli, Gianluigi;
Manas, Derek;
Reeves, Helen

Publication type:

Article

Ovarian carcinomas with genetic and epigenetic BRCA1 loss have distinct molecular abnormalities.

Published in:

BMC Cancer, 2008, v. 8, p. 1, doi. 10.1186/1471-2407-8-17

By:

Press, Joshua Z.;
De Luca, Alessandro;
Boyd, Niki;
Young, Sean;
Troussard, Armelle;
Ridge, Yolanda;
Kaurah, Pardeep;
Kalloger, Steve E.;
Blood, Katherine A.;
Smith, Margaret;
Spellman, Paul T.;
Yuker Wang;
Miller, Dianne M.;
Horsman, Doug;
Faham, Malek;
Gilks, C. Blake;
Gray, Joe;
Huntsman, David G.

Publication type:

Article

Enhanced NF kappa B and AP-1 transcriptional activity associated with antiestrogen resistant breast cancer.

Published in:

2007

By:

Zhou, Yamei;
Yau, Christina;
Gray, Joe W;
Chew, Karen;
Dairkee, Shanaz H;
Moore, Dan H;
Eppenberger, Urs;
Eppenberger-Castori, Serenella;
Benz, Christopher C

Publication type:

journal article

Enhanced NFκB and AP-1 transcriptional activity associated with antiestrogen resistant breast cancer.

Published in:

BMC Cancer, 2007, v. 7, p. 59, doi. 10.1186/1471-2407-7-59

By:

Yamei Zhou;
Yau, Christina;
Gray, Joe W.;
Chew, Karen;
Dairkee, Shanaz H.;
Moore, Dan H.;
Eppenberger, Urs;
Eppenberger-Castori, Serenella;
Benz, Christopher C.;
2

Publication type:

Article

Breast tumor copy number aberration phenotypes and genomic instability.

Published in:

BMC Cancer, 2006, v. 6, p. 96, doi. 10.1186/1471-2407-6-96

By:

Fridlyand, Jane;
Snijders, Antoine M;
Ylstra, Bauke;
Hua Li;
Olshen, Adam;
Segraves, Richard;
Dairkee, Shanaz;
Tokuyasu, Taku;
Ljung, Britt Marie;
Jain, Ajay N;
McLennan, Jane;
Ziegler, John;
Koei Chin;
Devries, Sandy;
Feiler, Heidi;
Gray, Joe W;
Waldman, Frederic;
Pinkel, Daniel;
Albertson, Donna G

Publication type:

Article

Amplification of 11q13 in ovarian carcinoma.

Published in:

Genes, Chromosomes & Cancer, 2008, v. 47, n. 6, p. 481, doi. 10.1002/gcc.20549

By:

Brown, Lindsay A.;
Kalloger, Steve E.;
Miller, Melinda A.;
Shih, Ie-Ming;
McKinney, Steven E.;
Santos, Jennifer L.;
Swenerton, Ken;
Spellman, Paul T.;
Gray, Joe;
Gilks, C. Blake;
Huntsman, David G.

Publication type:

Article

Chromosome arm 20q gains and other genomic alterations in colorectal cancer metastatic to liver, as analyzed by comparative genomic hybridization and fluorescence in situ hybridization.

Published in:

Genes, Chromosomes & Cancer, 1999, v. 25, n. 2, p. 82, doi. 10.1002/(SICI)1098-2264(199906)25:2<82::AID-GCC2>3.0.CO;2-6

By:

Korn, W. Michael;
Yasutake, Toru;
Kuo, Wen-Lin;
Warren, Robert S.;
Collins, Colin;
Tomita, Masao;
Gray, Joe;
Waldman, Frederic M.

Publication type:

Article

Molecular cytogenetic analysis of consistent abnormalities at 8q12-q22 in breast cancer.

Published in:

Genes, Chromosomes & Cancer, 1998, v. 22, n. 2, p. 105, doi. 10.1002/(SICI)1098-2264(199806)22:2<105::AID-GCC4>3.0.CO;2-0

By:

Schoenberg Fejzo, Marlena;
Godfrey, Tony;
Chen, Chira;
Waldman, Fred;
Gray, Joe W.

Publication type:

Article

DNA copy number changes associated with characteristic LOH in islet cell carcinomas of transgenic mice.

Published in:

Genes, Chromosomes & Cancer, 1997, v. 19, n. 2, p. 104, doi. 10.1002/(SICI)1098-2264(199706)19:2<104::AID-GCC6>3.0.CO;2-2

By:

Shi, Yu Ping;
Naik, Paul;
Dietrich, William F.;
Gray, Joe W.;
Hanahan, Douglas;
Pinkel, Daniel

Publication type:

Article

Identification of novel regions of altered DNA copy number in small cell lung tumors.

Published in:

Genes, Chromosomes & Cancer, 1995, v. 13, n. 3, p. 175, doi. 10.1002/gcc.2870130307

By:

Levin, Nikki A.;
Bnorka, Piur M.;
Warnock, Martha L.;
Gray, Joe W.;
Christman, Michael F.

Publication type:

Article

Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors.

Published in:

Genes, Chromosomes & Cancer, 1994, v. 10, n. 4, p. 231, doi. 10.1002/gcc.2870100403

By:

Kallioniemi, Olli-P.;
Kallioniemi, Anne;
Piper, Jim;
Isola, Jorma;
Waldman, Fred M.;
Gray, Joe W.;
Pinkel, Dan

Publication type:

Article