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A cloud-based training module for efficient de novo transcriptome assembly using Nextflow and Google cloud.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae313
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- Publication type:
- Article
Mutations in yeast Pcf11, a conserved protein essential for mRNA 3′ end processing and transcription termination, elicit the Environmental Stress Response.
- Published in:
- Genetics, 2024, v. 226, n. 2, p. 1, doi. 10.1093/genetics/iyad199
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- Publication type:
- Article
Loss of Krüppel-like factor 9 deregulates both physiological gene expression and development.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39453-3
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- Publication type:
- Article
Macrophage differentiation is marked by increased abundance of the mRNA 3’ end processing machinery, altered poly(A) site usage, and sensitivity to the level of CstF64.
- Published in:
- Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1091403
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- Publication type:
- Article
Differential effects of RASA3 mutations on hematopoiesis are profoundly influenced by genetic background and molecular variant.
- Published in:
- PLoS Genetics, 2020, v. 16, n. 12, p. 1, doi. 10.1371/journal.pgen.1008857
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- Publication type:
- Article
Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-68040-z
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- Publication type:
- Article
Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines.
- Published in:
- BMC Medical Genomics, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12920-019-0551-2
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- Publication type:
- Article
Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples.
- Published in:
- Genetics, 2019, v. 212, n. 3, p. 919, doi. 10.1534/genetics.118.301865
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- Publication type:
- Article
Factors that influence response classifications in chemotherapy treated patient-derived xenografts (PDX).
- Published in:
- PeerJ, 2019, p. 1, doi. 10.7717/peerj.6586
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- Publication type:
- Article
Mutant KLF1 in Adult Anemic Nan Mice Leads to Profound Transcriptome Changes and Disordered Erythropoiesis.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-30839-2
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- Publication type:
- Article
Promiscuous DNA-binding of a mutant zinc finger protein corrupts the transcriptome and diminishes cell viability.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 3, p. 1130, doi. 10.1093/nar/gkw1014
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- Publication type:
- Article
RNA-Seq Alignment to Individualized Genomes Improves Transcript Abundance Estimates in Multiparent Populations.
- Published in:
- Genetics, 2014, v. 198, n. 1, p. 59, doi. 10.1534/genetics.114.165886
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- Publication type:
- Article
Signals for pre-mRNA cleavage and polyadenylation.
- Published in:
- Wiley Interdisciplinary Reviews: RNA, 2012, v. 3, n. 3, p. 385, doi. 10.1002/wrna.116
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- Publication type:
- Article
Patterns of Recombination Activity on Mouse Chromosome 11 Revealed by High Resolution Mapping.
- Published in:
- PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015340
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- Publication type:
- Article
Gene-specific RNA polymerase II phosphorylation and the CTD code.
- Published in:
- Nature Structural & Molecular Biology, 2010, v. 17, n. 10, p. 1279, doi. 10.1038/nsmb.1913
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- Publication type:
- Article
CGDSNPdb: a database resource for error-checked and imputed mouse SNPs.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq008
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- Publication type:
- Article
Probe-Level Analysis of Expression Microarrays Characterizes Isoform-Specific Degradation during Mouse Oocyte Maturation.
- Published in:
- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007479
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- Publication type:
- Article
A customized and versatile high-density genotyping array for the mouse.
- Published in:
- Nature Methods, 2009, v. 6, n. 9, p. 663, doi. 10.1038/nmeth.1359
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- Publication type:
- Article
Position-dependent motif characterization using non-negative matrix factorization.
- Published in:
- Bioinformatics, 2008, v. 24, n. 23, p. 2684, doi. 10.1093/bioinformatics/btn526
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- Publication type:
- Article
The Recombinational Anatomy of a Mouse Chromosome.
- Published in:
- PLoS Genetics, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pgen.1000119
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- Publication type:
- Article
Evidence of a Large-Scale Functional Organization of Mammalian Chromosomes.
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- 2007
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- Publication type:
- Letter
Systematic variation in mRNA 3′-processing signals during mouse spermatogenesis.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. 1, p. 234, doi. 10.1093/nar/gkl919
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- Publication type:
- Article
Evidence of a Large-Scale Functional Organization of Mammalian Chromosomes.
- Published in:
- PLoS Genetics, 2005, v. 1, n. 3, p. 312, doi. 10.1371/journal.pgen.0010033
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- Publication type:
- Article
On the normalization of RNA equilibrium free energy to the length of the sequence.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 9, p. e49, doi. 10.1093/nar/gng049
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- Publication type:
- Article
Probabilistic prediction of Saccharomyces cerevisiae mRNA 3′-processing sites.
- Published in:
- Nucleic Acids Research, 2002, v. 30, n. 8, p. 1851, doi. 10.1093/nar/30.8.1851
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- Publication type:
- Article
Genomic detection of new yeast pre‐mRNA 3′‐end‐processing signals.
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 3, p. 888, doi. 10.1093/nar/27.3.888
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- Publication type:
- Article