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Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data.
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- PLoS Computational Biology, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012139
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Phylogeography and population structure of the global, wide host-range hybrid pathogen Phytophthora × cambivora.
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- IMA Fungus, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s43008-023-00109-6
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Genomic biosurveillance detects a sexual hybrid in the sudden oak death pathogen.
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- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03394-w
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Phylogeography of the wide‐host range panglobal plant pathogen Phytophthora cinnamomi.
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- Molecular Ecology, 2021, v. 30, n. 20, p. 5164, doi. 10.1111/mec.16109
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- Article
Growth, infection and aggressiveness of Phytophthora pathogens on Rhododendron leaves.
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- CABI Agriculture & Bioscience, 2021, v. 2, n. 1, p. 1, doi. 10.1186/s43170-021-00048-5
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- Article
Entering the international year of fruits and vegetables: tradeoffs between food production and the environment.
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- CABI Agriculture & Bioscience, 2021, v. 2, n. 1, p. 1, doi. 10.1186/s43170-021-00023-0
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Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races.
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- Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00490
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- Article
Are traded forest tree seeds a potential source of nonnative pests?
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- Ecological Applications, 2019, v. 29, n. 7, p. N.PAG, doi. 10.1002/eap.1971
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Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs.
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- PLoS ONE, 2019, v. 14, n. 01, p. 1, doi. 10.1371/journal.pone.0208606
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Expansion and Divergence of Argonaute Genes in the Oomycete Genus Phytophthora.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02841
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Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates.
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- BMC Biology, 2018, v. 16, n. 1, p. 1, doi. 10.1186/s12915-018-0549-9
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Inferring Variation in Copy Number Using High Throughput Sequencing Data in R.
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- Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00123
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Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.30925
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- Article
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data.
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- PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005404
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- Article
High levels of diversity and population structure in the potato late blight pathogen at the Mexico centre of origin.
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- Molecular Ecology, 2017, v. 26, n. 4, p. 1091, doi. 10.1111/mec.14000
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Towards an integrated ecosystem of R packages for the analysis of population genetic data.
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- Molecular Ecology Resources, 2017, v. 17, n. 1, p. 1, doi. 10.1111/1755-0998.12636
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vcfr: a package to manipulate and visualize variant call format data in R.
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- Molecular Ecology Resources, 2017, v. 17, n. 1, p. 44, doi. 10.1111/1755-0998.12549
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Developing educational resources for population genetics in R: an open and collaborative approach.
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- Molecular Ecology Resources, 2017, v. 17, n. 1, p. 120, doi. 10.1111/1755-0998.12558
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- Article
Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology.
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- PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0165690
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Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2717-z
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Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora.
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- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00284
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Identification of QTL controlling high levels of partial resistance to Fusarium solani f. sp. pisi in pea.
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- Plant Breeding, 2015, v. 134, n. 4, p. 446, doi. 10.1111/pbr.12287
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Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality.
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- Frontiers in Genetics, 2015, p. 1, doi. 10.3389/fgene.2015.00208
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The Top 10 oomycete pathogens in molecular plant pathology.
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- Molecular Plant Pathology, 2015, v. 16, n. 4, p. 413, doi. 10.1111/mpp.12190
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An Ephemeral Sexual Population of Phytophthora infestans in the Northeastern United States and Canada.
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- PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0116354
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Evolution of RXLR-Class Effectors in the Oomycete Plant Pathogen <i>Phytophthora ramorum</i>.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079347
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<i>Phytophthora</i> Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs.
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- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077181
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Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen.
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- PLoS Pathogens, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.ppat.1002940
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Novel insights into the emergence of pathogens: the case of chestnut blight.
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- Molecular Ecology, 2012, v. 21, n. 16, p. 3896, doi. 10.1111/j.1365-294X.2012.05597.x
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- Article
The Plant Pathogen Phytophthora andina Emerged via Hybridization of an Unknown Phytophthora Species and the Irish Potato Famine Pathogen, P. infestans.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024543
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Genetic diversity of Phytophthora infestans in the Northern Andean region.
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- BMC Genetics, 2011, v. 12, n. 1, p. 23, doi. 10.1186/1471-2156-12-23
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Distribución de Oosporas de Phytophthora infestans en el Suelo del Valle de Toluca, México.
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- Revista Mexicana de Fitopatología, 2011, v. 29, n. 1, p. 25
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Quantitative resistance to late blight from Solanum berthaultii cosegregates with R: insights in stability through isolates and environment.
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- Theoretical & Applied Genetics, 2010, v. 121, n. 8, p. 1553, doi. 10.1007/s00122-010-1410-x
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Population Genetic Analysis Infers Migration Pathways of Phytophthora ramorum in US Nurseries.
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- PLoS Pathogens, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.ppat.1000583
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Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals.
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- Molecular Plant Pathology, 2008, v. 9, n. 6, p. 729, doi. 10.1111/j.1364-3703.2008.00500.x
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Screening techniques and sources of resistance to root diseases in cool season food legumes.
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- Euphytica, 2006, v. 147, n. 1/2, p. 201, doi. 10.1007/s10681-006-6963-z
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- Article