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RAIN: machine learning-based identification for HIV-1 bNAbs.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49676-1
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- Publication type:
- Article
RAIN: machine learning-based identification for HIV-1 bNAbs.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49676-1
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- Publication type:
- Article
Antibody Correlates of Protection From Severe Respiratory Syncytial Virus Disease in a Vaccine Efficacy Trial.
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- Open Forum Infectious Diseases, 2023, v. 10, n. 1, p. 1, doi. 10.1093/ofid/ofac693
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- Publication type:
- Article
Defining cellular population dynamics at single-cell resolution during prostate cancer progression.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.79076
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- Publication type:
- Article
IDEAS: individual level differential expression analysis for single-cell RNA-seq data.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02605-1
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- Publication type:
- Article
The Immune Signatures data resource, a compendium of systems vaccinology datasets.
- Published in:
- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01714-7
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- Publication type:
- Article
The deficiency in Th2-like Tfh cells affects the maturation and quality of HIV-specific B cell response in viremic infection.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 01, doi. 10.3389/fimmu.2022.960120
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- Publication type:
- Article
Early and Long-Term HIV-1 Immunogenicity Induced in Macaques by the Combined Administration of DNA, NYVAC and Env Protein-Based Vaccine Candidates: The AUP512 Study.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.939627
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- Article
Optimizing clinical dosing of combination broadly neutralizing antibodies for HIV prevention.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pcbi.1010003
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- Article
Global and context-specific transcriptional consequences of oncogenic Fbw7 mutations.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.74338
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- Article
Targeting an alternate Wilms' tumor antigen 1 peptide bypasses immunoproteasome dependency.
- Published in:
- Science Translational Medicine, 2022, v. 14, n. 631, p. 1, doi. 10.1126/scitranslmed.abg8070
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- Article
Single-cell immunology of SARS-CoV-2 infection.
- Published in:
- Nature Biotechnology, 2022, v. 40, n. 1, p. 30, doi. 10.1038/s41587-021-01131-y
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- Publication type:
- Article
Integrated analysis of plasma and single immune cells uncovers metabolic changes in individuals with COVID-19.
- Published in:
- Nature Biotechnology, 2022, v. 40, n. 1, p. 110, doi. 10.1038/s41587-021-01020-4
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- Publication type:
- Article
Spatial transcriptomics at subspot resolution with BayesSpace.
- Published in:
- Nature Biotechnology, 2021, v. 39, n. 11, p. 1375, doi. 10.1038/s41587-021-00935-2
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- Article
Comparative analysis of TCR and CAR signaling informs CAR designs with superior antigen sensitivity and in vivo function.
- Published in:
- Science Signaling, 2021, v. 14, n. 697, p. 1, doi. 10.1126/scisignal.abe2606
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- Article
Monocyte metabolic transcriptional programs associate with resistance to tuberculin skin test/interferon-γ release assay conversion.
- Published in:
- 2021
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- Publication type:
- journal article
Optimal therapeutic targeting by HDAC inhibition in biopsy-derived treatment-naïve diffuse midline glioma models.
- Published in:
- Neuro-Oncology, 2021, v. 23, n. 3, p. 376, doi. 10.1093/neuonc/noaa249
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- Publication type:
- Article
Optimal priming of poxvirus vector (NYVAC)-based HIV vaccine regimens for T cell responses requires three DNA injections. Results of the randomized multicentre EV03/ANRS VAC20 Phase I/II Trial.
- Published in:
- PLoS Pathogens, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.ppat.1008522
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- Publication type:
- Article
3M-052, a synthetic TLR-7/8 agonist, induces durable HIV-1 envelope–specific plasma cells and humoral immunity in nonhuman primates.
- Published in:
- Science Immunology, 2020, v. 5, n. 48, p. 1, doi. 10.1126/sciimmunol.abb1025
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- Publication type:
- Article
Characterization of two in vivo challenge models to measure functional activity of monoclonal antibodies to Plasmodium falciparum circumsporozoite protein.
- Published in:
- Malaria Journal, 2020, v. 19, n. 1, p. 1, doi. 10.1186/s12936-020-03181-0
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- Publication type:
- Article
Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-13880-1
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- Publication type:
- Article
Integrated systems approach defines the antiviral pathways conferring protection by the RV144 HIV vaccine.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08854-2
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- Article
CytoML for cross‐platform cytometry data sharing.
- Published in:
- Cytometry. Part A, 2018, v. 93, n. 12, p. 1189, doi. 10.1002/cyto.a.23663
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- Publication type:
- Article
ggCyto: next generation open-source visualization software for cytometry.
- Published in:
- Bioinformatics, 2018, v. 34, n. 22, p. 3951, doi. 10.1093/bioinformatics/bty441
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- Publication type:
- Article
T Cell–Dependent Affinity Maturation and Innate Immune Pathways Differentially Drive Autoreactive B Cell Responses in Rheumatoid Arthritis.
- Published in:
- Arthritis & Rheumatology, 2018, v. 70, n. 11, p. 1732, doi. 10.1002/art.40578
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- Article
cytometree: A binary tree algorithm for automatic gating in cytometry analysis.
- Published in:
- Cytometry. Part A, 2018, v. 93, n. 11, p. 1132, doi. 10.1002/cyto.a.23601
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- Publication type:
- Article
Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function.
- Published in:
- Science Signaling, 2018, v. 11, n. 544, p. 1, doi. 10.1126/scisignal.aat6753
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- Publication type:
- Article
Whole blood transcriptome changes following controlled human malaria infection in malaria pre-exposed volunteers correlate with parasite prepatent period.
- Published in:
- PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0199392
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- Article
A Functional Toll-Interacting Protein Variant Is Associated with Bacillus Calmette-Guérin-Specific Immune Responses and Tuberculosis.
- Published in:
- 2017
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- Publication type:
- journal article
Combined single-cell quantitation of host and SIV genes and proteins ex vivo reveals host-pathogen interactions in individual cells.
- Published in:
- PLoS Pathogens, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.ppat.1006445
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- Publication type:
- Article
Higher T-Cell Responses Induced by DNA/rAd5 HIV-1 Preventive Vaccine Are Associated With Lower HIV-1 Infection Risk in an Efficacy Trial.
- Published in:
- 2017
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- Publication type:
- journal article
Bayesian hierarchical modeling for subject-level response classification in peptide microarray immunoassays.
- Published in:
- Biometrics, 2016, v. 72, n. 4, p. 1206, doi. 10.1111/biom.12523
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- Publication type:
- Article
The contribution of cell cycle to heterogeneity in single-cell RNA-seq data.
- Published in:
- Nature Biotechnology, 2016, v. 34, n. 6, p. 591, doi. 10.1038/nbt.3498
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- Publication type:
- Article
Automated analysis of flow cytometry data comes of age.
- Published in:
- Cytometry. Part A, 2016, v. 89, n. 1, p. 13, doi. 10.1002/cyto.a.22810
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- Article
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.
- Published in:
- Cytometry. Part A, 2016, v. 89, n. 1, p. 16, doi. 10.1002/cyto.a.22732
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- Publication type:
- Article
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.
- Published in:
- Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0844-5
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- Publication type:
- Article
State-of-the-Art in the Computational Analysis of Cytometry Data.
- Published in:
- Cytometry. Part A, 2015, v. 87, n. 7, p. 591, doi. 10.1002/cyto.a.22707
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- Publication type:
- Article
Identification and visualization of multidimensional antigen-specific T-cell populations in polychromatic cytometry data.
- Published in:
- Cytometry. Part A, 2015, v. 87, n. 7, p. 675, doi. 10.1002/cyto.a.22623
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- Publication type:
- Article
flowCL: ontology-based cell population labelling in flow cytometry.
- Published in:
- Bioinformatics, 2015, v. 31, n. 8, p. 1337, doi. 10.1093/bioinformatics/btu807
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- Article
flowCL: ontology-based cell population labelling in flow cytometry.
- Published in:
- 2015
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- Publication type:
- Product Review
flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.
- Published in:
- Bioinformatics, 2015, v. 31, n. 4, p. 606, doi. 10.1093/bioinformatics/btu677
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- Publication type:
- Article
Mucosal effects of tenofovir 1% gel.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.04525.001
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- Publication type:
- Article
Orchestrating high-throughput genomic analysis with Bioconductor.
- Published in:
- Nature Methods, 2015, v. 12, n. 2, p. 115, doi. 10.1038/nmeth.3252
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- Publication type:
- Article
Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1003973
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- Publication type:
- Article
FCCR2C polymorphisms associate with HIV-1 vaccine protection in RV144 trial.
- Published in:
- Journal of Clinical Investigation, 2014, v. 124, n. 9, p. 3879, doi. 10.1172/JCI75539
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- Article
The Inner Foreskin of Healthy Males at Risk of HIV Infection Harbors Epithelial CD4+ CCR5+ Cells and Has Features of an Inflamed Epidermal Barrier.
- Published in:
- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0108954
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- Publication type:
- Article
OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003806
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- Publication type:
- Article
Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003696
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- Publication type:
- Article
Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 11, p. 7290, doi. 10.1093/nar/gku347
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- Publication type:
- Article
High-throughput flow cytometry data normalization for clinical trials.
- Published in:
- Cytometry. Part A, 2014, v. 85A, n. 3, p. 277, doi. 10.1002/cyto.a.22433
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- Publication type:
- Article