Works by Gosline, Sara J. C.

Results: 17

Cutaneous neurofibromas in the genomics era: current understanding and open questions.

Published in:

British Journal of Cancer, 2018, v. 118, n. 12, p. 1539, doi. 10.1038/s41416-018-0073-2

By:

Allaway, Robert J.;
Gosline, Sara J. C.;
La Rosa, Salvatore;
Knight, Pamela;
Bakker, Annette;
Guinney, Justin;
Le, Lu Q.

Publication type:

Article

Cutaneous neurofibromas in the genomics era: current understanding and open questions.

Published in:

2018

By:

Allaway, Robert J.;
Gosline, Sara J. C.;
La Rosa, Salvatore;
Knight, Pamela;
Bakker, Annette;
Guinney, Justin;
Le, Lu Q.

Publication type:

journal article

Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab039

By:

Liu, Xuan;
Gosline, Sara J C;
Pflieger, Lance T;
Wallet, Pierre;
Iyer, Archana;
Guinney, Justin;
Bild, Andrea H;
Chang, Jeffrey T

Publication type:

Article

Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens.

Published in:

PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0185650

By:

Ursu, Oana;
Gosline, Sara J. C.;
Beeharry, Neil;
Fink, Lauren;
Bhattacharjee, Vikram;
Huang, Shao-shan Carol;
Zhou, Yan;
Yen, Tim;
Fraenkel, Ernest

Publication type:

Article

Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML.

Published in:

Clinical Proteomics, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12014-022-09367-9

By:

Gosline, Sara J. C.;
Tognon, Cristina;
Nestor, Michael;
Joshi, Sunil;
Modak, Rucha;
Damnernsawad, Alisa;
Posso, Camilo;
Moon, Jamie;
Hansen, Joshua R.;
Hutchinson-Bunch, Chelsea;
Pino, James C.;
Gritsenko, Marina A.;
Weitz, Karl K.;
Traer, Elie;
Tyner, Jeffrey;
Druker, Brian;
Agarwal, Anupriya;
Piehowski, Paul;
McDermott, Jason E.;
Rodland, Karin

Publication type:

Article

SAMNetWeb: identifying condition-specific networks linking signaling and transcription.

Published in:

Bioinformatics, 2015, v. 31, n. 7, p. 1124, doi. 10.1093/bioinformatics/btu748

By:

Gosline, Sara J. C.;
Oh, Coyin;
Fraenkel, Ernest

Publication type:

Article

A field guide to cultivating computational biology.

Published in:

PLoS Biology, 2021, v. 19, n. 10, p. 1, doi. 10.1371/journal.pbio.3001419

By:

Way, Gregory P.;
Greene, Casey S.;
Carninci, Piero;
Carvalho, Benilton S.;
de Hoon, Michiel;
Finley, Stacey;
Gosline, Sara J. C.;
Lȇ Cao, Kim-Anh;
Lee, Jerry S. H.;
Marchionni, Luigi;
Robine, Nicolas;
Sindi, Suzanne S.;
Theis, Fabian J.;
Yang, Jean Y. H.;
Carpenter, Anne E.;
Fertig, Elana J.

Publication type:

Article

Current and future directions in network biology.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae099

By:

Zitnik, Marinka;
Li, Michelle M;
Wells, Aydin;
Glass, Kimberly;
Gysi, Deisy Morselli;
Krishnan, Arjun;
Murali, T M;
Radivojac, Predrag;
Roy, Sushmita;
Baudot, Anaïs;
Bozdag, Serdar;
Chen, Danny Z;
Cowen, Lenore;
Devkota, Kapil;
Gitter, Anthony;
Gosline, Sara J C;
Gu, Pengfei;
Guzzi, Pietro H;
Huang, Heng;
Jiang, Meng

Publication type:

Article

The evolution and multi-molecular properties of NF1 cutaneous neurofibromas originating from C-fiber sensory endings and terminal Schwann cells at normal sites of sensory terminations in the skin.

Published in:

PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0216527

By:

Rice, Frank L.;
Houk, George;
Wymer, James P.;
Gosline, Sara J. C.;
Guinney, Justin;
Wu, Jianqiang;
Ratner, Nancy;
Jankowski, Michael P.;
La Rosa, Salvo;
Dockum, Marilyn;
Storey, James R.;
Carroll, Steven L.;
Albrecht, Phillip J.;
Riccardi, Vincent M.

Publication type:

Article

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004879

By:

Tuncbag, Nurcan;
Gosline, Sara J. C.;
Kedaigle, Amanda;
Soltis, Anthony R.;
Gitter, Anthony;
Fraenkel, Ernest

Publication type:

Article

Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002887

By:

Huang, Shao-shan Carol;
Clarke, David C.;
Gosline, Sara J. C.;
Labadorf, Adam;
Chouinard, Candace R.;
Gordon, William;
Lauffenburger, Douglas A.;
Fraenkel, Ernest

Publication type:

Article

SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets.

Published in:

Integrative Biology, 2012, v. 4, n. 11, p. 1415, doi. 10.1039/c2ib20072d

By:

Gosline, Sara J. C.;
Spencer, Sarah J.;
Ursu, Oana;
Fraenkel, Ernest

Publication type:

Article

Intracellular Eukaryotic Parasites Have a Distinct Unfolded Protein Response.

Published in:

PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019118

By:

Gosline, Sara J. C.;
Nascimento, Mirna;
McCall, Laura-Isobel;
Zilberstein, Dan;
Thomas, David Y.;
Matlashewski, Greg;
Hallett, Michael

Publication type:

Article

A clinically and genomically annotated nerve sheath tumor biospecimen repository.

Published in:

Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0508-5

By:

Pollard, Kai;
Banerjee, Jineta;
Doan, Xengie;
Wang, Jiawan;
Guo, Xindi;
Allaway, Robert;
Langmead, Shannon;
Slobogean, Bronwyn;
Meyer, Christian F.;
Loeb, David M.;
Morris, Carol D.;
Belzberg, Allan J.;
Blakeley, Jaishri O.;
Rodriguez, Fausto J.;
Guinney, Justin;
Gosline, Sara J. C.;
Pratilas, Christine A.

Publication type:

Article

Engaging a community to enable disease-centric data sharing with the NF Data Portal.

Published in:

Scientific Data, 2019, v. 6, n. 1, p. 1, doi. 10.1038/s41597-019-0317-x

By:

Allaway, Robert J.;
La Rosa, Salvatore;
Verma, Sharad;
Mangravite, Lara;
Guinney, Justin;
Blakeley, Jaishri;
Bakker, Annette;
Gosline, Sara J. C.

Publication type:

Article

The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes.

Published in:

Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02021-5

By:

Gosline, Sara J. C.;
Kim, Doo Nam;
Pande, Paritosh;
Thomas, Dennis G.;
Truong, Lisa;
Hoffman, Peter;
Barton, Michael;
Loftus, Joseph;
Moran, Addy;
Hampton, Shawn;
Dowson, Scott;
Franklin, Lyndsey;
Degnan, David;
Anderson, Lindsey;
Thessen, Anne;
Tanguay, Robyn L.;
Anderson, Kim A.;
Waters, Katrina M.

Publication type:

Article

Probing the chemical-biological relationship space with the Drug Target Explorer.

Published in:

Journal of Cheminformatics, 2018, v. 10, n. 1, p. 1, doi. 10.1186/s13321-018-0297-4

By:

Allaway, Robert J.;
La Rosa, Salvatore;
Guinney, Justin;
Gosline, Sara J. C.

Publication type:

Article