Works by Gordon, Jeffrey I.

Results: 75

Establishing human microbial observatory programs in low‐ and middle‐income countries.

Published in:

Annals of the New York Academy of Sciences, 2024, v. 1540, n. 1, p. 13, doi. 10.1111/nyas.15224

By:

Gordon, Jeffrey I.;
Barratt, Michael J.;
Hibberd, Matthew C.;
Rahman, Mustafizur;
Ahmed, Tahmeed

Publication type:

Article

An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome.

Published in:

Annals of the New York Academy of Sciences, 2014, v. 1332, n. 1, p. 22, doi. 10.1111/nyas.12487

By:

Ahmed, Tahmeed;
Auble, David;
Berkley, James A.;
Black, Robert;
Ahern, Philip P.;
Hossain, Muttaquina;
Hsieh, Andrea;
Ireen, Santhia;
Arabi, Mandana;
Gordon, Jeffrey I.

Publication type:

Article

Where Next for Microbiome Research?

Published in:

PLoS Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1371/journal.pbio.1002050

By:

Waldor, Matthew K.;
Tyson, Gene;
Borenstein, Elhanan;
Ochman, Howard;
Moeller, Andrew;
Finlay, B. Brett;
Kong, Heidi H.;
Gordon, Jeffrey I.;
Nelson, Karen E.;
Dabbagh, Karim;
Smith, Hamilton

Publication type:

Article

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing <i>Bacteroides cellulosilyticus</i> WH2, a Symbiont with an Extensive Glycobiome.

Published in:

PLoS Biology, 2013, v. 11, n. 8, p. 1, doi. 10.1371/journal.pbio.1001637

By:

McNulty, Nathan P.;
Wu, Meng;
Erickson, Alison R.;
Pan, Chongle;
Erickson, Brian K.;
Martens, Eric C.;
Pudlo, Nicholas A.;
Muegge, Brian D.;
Henrissat, Bernard;
Hettich, Robert L.;
Gordon, Jeffrey I.

Publication type:

Article

Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts.

Published in:

PLoS Biology, 2011, v. 9, n. 12, p. 1, doi. 10.1371/journal.pbio.1001221

By:

Martens, Eric C.;
Lowe, Elisabeth C.;
Chiang, Herbert;
Pudlo, Nicholas A.;
Meng Wu;
McNulty, Nathan P.;
Abbott, D. Wade;
Henrissat, Bernard;
Gilbert, Harry J.;
Bolam, David N.;
Gordon, Jeffrey I.

Publication type:

Article

Genomic and Metabolic Studies of the Impact of Probiotics on a Model Gut Symbiont and Host.

Published in:

PLoS Biology, 2006, v. 4, n. 12, p. 2213, doi. 10.1371/journal.pbio.0040413

By:

Sonnenburg, Justin L.;
Chen, Christina T. L.;
Gordon, Jeffrey I.

Publication type:

Article

Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 12, p. 3869, doi. 10.1093/nar/gkq066

By:

Zaneveld, Jesse R.;
Lozupone, Catherine;
Gordon, Jeffrey I.;
Knight, Rob

Publication type:

Article

A new approach for filtering noise from high-density oligonucleotide microarray datasets.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 15, p. e72, doi. 10.1093/nar/29.15.e72

By:

Mills, Jason C.;
Gordon, Jeffrey I.

Publication type:

Article

Transcription of INO2 and INO4 is regulatedby the state of protein N‐myristoylation in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 12, p. 2865, doi. 10.1093/nar/26.12.2865

By:

Cok, Steven J.;
Martin, Ciara G.;
Gordon, Jeffrey I.

Publication type:

Article

Moving pictures of the human microbiome.

Published in:

Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r50

By:

Caporaso, J. Gregory;
Lauber, Christian L.;
Costello, Elizabeth K.;
Berg-Lyons, Donna;
Gonzalez, Antonio;
Stombaugh, Jesse;
Knights, Dan;
Gajer, Pawel;
Ravel, Jacques;
Fierer, Noah;
Gordon, Jeffrey I.;
Knight, Rob

Publication type:

Article

A multi-glycomic platform for the analysis of food carbohydrates.

Published in:

Nature Protocols, 2024, v. 19, n. 11, p. 3321, doi. 10.1038/s41596-024-01017-8

By:

Couture, Garret;
Cheang, Shawn Ehlers;
Suarez, Christopher;
Chen, Ye;
Bacalzo Jr, Nikita P.;
Jiang, Jiani;
Weng, Cheng-Yu Charlie;
Stacy, Aaron;
Castillo, Juan J.;
Delannoy-Bruno, Omar;
Webber, Daniel M.;
Barratt, Michael J.;
Gordon, Jeffrey I.;
Mills, David A.;
German, J. Bruce;
Fukagawa, Naomi K.;
Lebrilla, Carlito B.

Publication type:

Article

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 7, p. 497, doi. 10.1038/nrmicro3050

By:

Kaoutari, Abdessamad El;
Armougom, Fabrice;
Gordon, Jeffrey I.;
Raoult, Didier;
Henrissat, Bernard

Publication type:

Article

Going viral: next-generation sequencing applied to phage populations in the human gut.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 9, p. 607, doi. 10.1038/nrmicro2853

By:

Reyes, Alejandro;
Semenkovich, Nicholas P.;
Whiteson, Katrine;
Rohwer, Forest;
Gordon, Jeffrey I.

Publication type:

Article

Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.64478

By:

Wesener, Darryl A.;
Beller, Zachary W.;
Peters, Samantha L.;
Rajabi, Amir;
Dimartino, Gianluca;
Giannone, Richard J.;
Hettich, Robert L.;
Gordon, Jeffrey I.

Publication type:

Article

DNA microarrays and beyond: completing the journey from tissue to cell.

Published in:

Nature Cell Biology, 2001, v. 3, n. 8, p. E175, doi. 10.1038/35087108

By:

Mills, Jason C.;
Roth, Kevin A.;
Cagan, Ross L.;
Gordon, Jeffrey I.

Publication type:

Article

Comparative analysis of the β transducin family with identification of several new members including PWP1, a nonessential gene of Saccharomyces cerevisiae that is divergently transcribed from NMT1.

Published in:

Proteins, 1992, v. 13, n. 1, p. 41, doi. 10.1002/prot.340130105

By:

Duronio, Robert J.;
Gordon, Jeffrey I.;
Boguski, Mark S.

Publication type:

Article

Diversity, stability and resilience of the human gut microbiota.

Published in:

Nature, 2012, v. 489, n. 7415, p. 220, doi. 10.1038/nature11550

By:

Lozupone, Catherine A.;
Stombaugh, Jesse I.;
Gordon, Jeffrey I.;
Jansson, Janet K.;
Knight, Rob

Publication type:

Article

Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity.

Published in:

Nature, 2012, v. 482, n. 7384, p. 179, doi. 10.1038/nature10809

By:

Henao-Mejia, Jorge;
Elinav, Eran;
Jin, Chengcheng;
Hao, Liming;
Mehal, Wajahat Z.;
Strowig, Till;
Thaiss, Christoph A.;
Kau, Andrew L.;
Eisenbarth, Stephanie C.;
Jurczak, Michael J.;
Camporez, Joao-Paulo;
Shulman, Gerald I.;
Gordon, Jeffrey I.;
Hoffman, Hal M.;
Flavell, Richard A.

Publication type:

Article

Human nutrition, the gut microbiome and the immune system.

Published in:

Nature, 2011, v. 474, n. 7351, p. 327, doi. 10.1038/nature10213

By:

Kau, Andrew L.;
Ahern, Philip P.;
Griffin, Nicholas W.;
Goodman, Andrew L.;
Gordon, Jeffrey I.

Publication type:

Article

Viruses in the faecal microbiota of monozygotic twins and their mothers.

Published in:

Nature, 2010, v. 466, n. 7304, p. 334, doi. 10.1038/nature09199

By:

Reyes, Alejandro;
Haynes, Matthew;
Hanson, Nicole;
Angly, Florent E.;
Heath, Andrew C.;
Rohwer, Forest;
Gordon, Jeffrey I.

Publication type:

Article

A core gut microbiome in obese and lean twins.

Published in:

2009

By:

Turnbaugh, Peter J.;
Hamady, Micah;
Yatsunenko, Tanya;
Cantarel, Brandi L.;
Duncan, Alexis;
Ley, Ruth E.;
Sogin, Mitchell L.;
Jones, William J.;
Roe, Bruce A.;
Affourtit, Jason P.;
Egholm, Michael;
Henrissat, Bernard;
Heath, Andrew C.;
Knight, Rob;
Gordon, Jeffrey I.

Publication type:

Letter

Innate immunity and intestinal microbiota in the development of Type 1 diabetes.

Published in:

Nature, 2008, v. 455, n. 7216, p. 1109, doi. 10.1038/nature07336

By:

Li Wen;
Ley, Ruth E.;
Volchkov, Pavel Yu.;
Stranges, Peter B.;
Avanesyan, Lia;
Stonebraker, Austin C.;
Changyun Hu;
Wong, F. Susan;
Szot, Gregory L.;
Bluestone, Jeffrey A.;
Gordon, Jeffrey I.;
Chervonsky, Alexander V.

Publication type:

Article

Genetic studies reveal that myristoylCoA:protein N-myristoyltransferase is an essential enzyme in Candida albicans.

Published in:

Molecular Microbiology, 1995, v. 16, n. 2, p. 241, doi. 10.1111/j.1365-2958.1995.tb02296.x

By:

Weinberg, Robin A.;
McWherter, Charles A.;
Freeman, Sandra K.;
Wood, David C.;
Lee, Stephen C.;
Gordon, Jeffrey I.

Publication type:

Article

Fibroblast growth factor receptor signalling is crucial for liver homeostasis and regeneration.

Published in:

Oncogene, 2003, v. 22, n. 28, p. 4380, doi. 10.1038/sj.onc.1206499

By:

Steiling, Heike;
Wustefeld, Torsten;
Bugnon, Philippe;
Brauchle, Maria;
Fassler, Reinhard;
Teupser, Daniel;
Thiery, Joachim;
Gordon, Jeffrey I;
Trautwein, Christian;
Werner, Sabine

Publication type:

Article

The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins.

Published in:

Science Translational Medicine, 2011, v. 3, n. 106, p. 1, doi. 10.1126/scitranslmed.3002701

By:

Yatsunenko, Tanya;
Hsiao, Ansel;
Faith, Jeremiah J.;
Muegge, Brian D.;
Goodman, Andrew L.;
Henrissat, Bernard;
Oozeer, Raish;
Cools-Portier, Stéphanie;
Gobert, Guillaume;
Chervaux, Christian;
Knights, Dan;
Lozupone, Catherine A.;
Knight, Rob;
Duncan, Alexis E.;
Bain, James R.;
Muehlbauer, Michael J.;
Newgard, Christopher B.;
Heath, Andrew C.;
Gordon, Jeffrey I.

Publication type:

Article

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice.

Published in:

Science Translational Medicine, 2009, v. 1, n. 6, p. 1, doi. 10.1126/scitranslmed.3000322

By:

Turnbaugh, Peter J.;
Ridaura, Vanessa K.;
Faith, Jeremiah J.;
Rey, Federico E.;
Knight, Rob;
Gordon, Jeffrey I.

Publication type:

Article

Postprandial remodeling of the gut microbiota in Burmese pythons.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 11, p. 1375, doi. 10.1038/ismej.2010.71

By:

Costello, Elizabeth K.;
Gordon, Jeffrey I.;
Secor, Stephen M.;
Knight, Rob

Publication type:

Article

Creating and characterizing communities of human gut microbes in gnotobiotic mice.

Published in:

2010

By:

Faith, Jeremiah J.;
Rey, Federico E.;
O'Donnell, David;
Karlsson, Maria;
McNulty, Nathan P.;
Kallstrom, George;
Goodman, Andrew L.;
Gordon, Jeffrey I.

Publication type:

Opinion

Glycans as legislators of host--microbial interactions: spanning the spectrum from symbiosis to pathogenicity.

Published in:

Glycobiology, 2001, v. 11, n. 2, p. 1R, doi. 10.1093/glycob/11.2.1R

By:

Hooper, Lora V.;
Gordon, Jeffrey I.

Publication type:

Article

Host-microbial symbiosis in the mammalian intestine: Exploring an internal ecosystem.

Published in:

BioEssays, 1998, v. 20, n. 4, p. 336, doi. 10.1002/(SICI)1521-1878(199804)20:4<336::AID-BIES10>3.0.CO;2-3

By:

Hooper, Lora V.;
Bry, Lynn;
Falk, Per G.;
Gordon, Jeffrey I.

Publication type:

Article

Identificación de nuevas partículas virales a partir de metagenomas virales intestinales y modelos en ratón.

Published in:

Biomédica: Revista del Instituto Nacional de Salud, 2015, v. 35, p. 49

By:

Leonardo Moreno, Jaime;
Boiling, Lance;
Whiteson, Katrine;
Heath, Andrew;
Rohwer, Forest;
Gordon, Jeffrey I.;
Reyes, Alejandro

Publication type:

Article

Impaired prostate tumorigenesis in Egr1-deficient mice.

Published in:

Nature Medicine, 2001, v. 7, n. 1, p. 101, doi. 10.1038/83231

By:

Abdulkadir, Sarki A.;
Qu, Zhican;
Garabedian, Emily;
Song, Sheng-Kwei;
Peters, Thomas J.;
Svaren, John;
Carbone, Joseph M.;
Naughton, Cathy K.;
Catalona, William J.;
Ackerman, Joseph J.H.;
Gordon, Jeffrey I.;
Humphrey, Peter A.;
Milbrandt, Jeffrey

Publication type:

Article

Members of the human gut microbiota involved in recovery from Vibrio cholerae infection.

Published in:

Nature, 2014, v. 515, n. 7527, p. 423, doi. 10.1038/nature13738

By:

Hsiao, Ansel;
Subramanian, Sathish;
Griffin, Nicholas W.;
Drewry, Lisa L.;
Gordon, Jeffrey I.;
Ahmed, A. M. Shamsir;
Petri, William A.;
Haque, Rashidul;
Ahmed, Tahmeed

Publication type:

Article

Persistent gut microbiota immaturity in malnourished Bangladeshi children.

Published in:

Nature, 2014, v. 510, n. 7505, p. 417, doi. 10.1038/nature13421

By:

Subramanian, Sathish;
Huq, Sayeeda;
Yatsunenko, Tanya;
Haque, Rashidul;
Mahfuz, Mustafa;
Alam, Mohammed A.;
Benezra, Amber;
DeStefano, Joseph;
Meier, Martin F.;
Muegge, Brian D.;
Barratt, Michael J.;
VanArendonk, Laura G.;
Zhang, Qunyuan;
Province, Michael A.;
Petri Jr, William A.;
Ahmed, Tahmeed;
Gordon, Jeffrey I.

Publication type:

Article

Transplantation of gut microbiota from old mice into young healthy mice reduces lean mass but not bone mass.

Published in:

Gut Microbes, 2023, v. 15, n. 1, p. 1, doi. 10.1080/19490976.2023.2236755

By:

Lawenius, Lina;
Cowardin, Carrie;
Grahnemo, Louise;
Scheffler, Julia M.;
Horkeby, Karin;
Engdahl, Cecilia;
Wu, Jianyao;
Vandenput, Liesbeth;
Koskela, Antti;
Tuukkanen, Juha;
Coward, Eivind;
Hveem, Kristian;
Langhammer, Arnulf;
Abrahamsson, Sanna;
Gordon, Jeffrey I.;
Sjögren, Klara;
Ohlsson, Claes

Publication type:

Article

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

Published in:

Nature Methods, 2013, v. 10, n. 1, p. 57, doi. 10.1038/nmeth.2276

By:

Bokulich, Nicholas A;
Subramanian, Sathish;
Faith, Jeremiah J;
Gevers, Dirk;
Gordon, Jeffrey I;
Knight, Rob;
Mills, David A;
Caporaso, J Gregory

Publication type:

Article

Development and Acceptability of Shelf-Stable Microbiota Directed Complementary Food Formulations.

Published in:

Food & Nutrition Bulletin, 2024, v. 45, n. 2/3, p. 67, doi. 10.1177/03795721241250104

By:

Mostafa, Ishita;
Lamiya, Umme Habiba;
Rasul, Md. Golam;
Naila, Nurun Nahar;
Fahim, Shah Mohammad;
Hasan, S. M. Tafsir;
Barratt, Michael J.;
Gordon, Jeffrey I.;
Ahmed, Tahmeed

Publication type:

Article

Synthesis of novel tritium labeled oxamyristic acids.

Published in:

Journal of Labelled Compounds & Radiopharmaceuticals, 1991, v. 29, n. 2, p. 157, doi. 10.1002/jlcr.2580290206

By:

Devadas, Balekudru;
Adams, Steven P.;
Gordon, Jeffrey I.

Publication type:

Article

MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1265

By:

Jian Xu;
Jeffrey I. Gordon

Publication type:

Article

TREM2 deficiency reprograms intestinal macrophages and microbiota to enhance anti–PD-1 tumor immunotherapy.

Published in:

Science Immunology, 2024, v. 9, n. 95, p. 1, doi. 10.1126/sciimmunol.adi5374

By:

Di Luccia, Blanda;
Molgora, Martina;
Khantakova, Darya;
Jaeger, Natalia;
Chang, Hao-Wei;
Czepielewski, Rafael S.;
Helmink, Beth A.;
Onufer, Emily J.;
Fachi, José L.;
Bhattarai, Bishan;
Trsan, Tihana;
Rodrigues, Patrick F.;
Hou, JinChao;
Bando, Jennifer K.;
da Silva, Cristiane Sécca;
Cella, Marina;
Gilfillan, Susan;
Schreiber, Robert D.;
Gordon, Jeffrey I.;
Colonna, Marco

Publication type:

Article

The core gut microbiome, energy balance and obesity.

Published in:

Journal of Physiology, 2009, v. 587, n. 17, p. 4153, doi. 10.1113/jphysiol.2009.174136

By:

Turnbaugh, Peter J.;
Gordon, Jeffrey I.

Publication type:

Article

Defining hierarchical protein interaction networks from spectral analysis of bacterial proteomes.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.74104

By:

Zaydman, Mark A.;
Little, Alexander S.;
Haro, Fidel;
Aksianiuk, Valeryia;
Buchser, William J.;
DiAntonio, Aaron;
Gordon, Jeffrey I.;
Milbrandt, Jeffrey;
Raman, Arjun S.

Publication type:

Article

Lifestyle of Lactobacillus plantarum in the mouse caecum.

Published in:

Environmental Microbiology, 2009, v. 11, n. 10, p. 2747, doi. 10.1111/j.1462-2920.2009.02001.x

By:

Marco, Maria L.;
Peters, Theodorus H. F.;
Bongers, Roger S.;
Molenaar, Douwe;
van Hemert, Saskia;
Sonnenburg, Justin L.;
Gordon, Jeffrey I.;
Kleerebezem, Michiel

Publication type:

Article

The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology.

Published in:

2007

By:

Ley, Ruth E.;
Knight, Rob;
Gordon, Jeffrey I.

Publication type:

Other

The effects of micronutrient deficiencies on bacterial species from the human gut microbiota.

Published in:

Science Translational Medicine, 2017, v. 9, n. 390, p. 1, doi. 10.1126/scitranslmed.aal4069

By:

Hibberd, Matthew C.;
Meng Wu;
Rodionov, Dmitry A.;
Xiaoqing Li;
Jiye Cheng;
Griffin, Nicholas W.;
Barratt, Michael J.;
Giannone, Richard J.;
Hettich, Robert L.;
Osterman, Andrei L.;
Gordon, Jeffrey I.

Publication type:

Article

Effects of a gut pathobiont in a gnotobiotic mouse model of childhood undernutrition.

Published in:

Science Translational Medicine, 2016, v. 8, n. 366, p. 1, doi. 10.1126/scitranslmed.aah4669

By:

Wagner, Vitas E.;
Dey, Neelendu;
Guruge, Janaki;
Hsiao, Ansel;
Ahern, Philip P.;
Semenkovich, Nicholas P.;
Blanton, Laura V.;
Jiye Cheng;
Griffin, Nicholas;
Stappenbeck, Thaddeus S.;
Ilkayeva, Olga;
Newgard, Christopher B.;
Petri, William;
Haque, Rashidul;
Ahmed, Tahmeed;
Gordon, Jeffrey I.

Publication type:

Article

Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy.

Published in:

Science Translational Medicine, 2015, v. 7, n. 276, p. 1, doi. 10.1126/scitranslmed.aaa4877

By:

Kau, Andrew L.;
Planer, Joseph D.;
Jie Liu;
Rao, Sindhuja;
Yatsunenko, Tanya;
Trehan, Indi;
Manary, Mark J.;
Ta-Chiang Liu;
Stappenbeck, Thaddeus S.;
Maleta, Kenneth M.;
Ashorn, Per;
Dewey, Kathryn G.;
Houpt, Eric R.;
Chyi-Song Hsieh;
Gordon, Jeffrey I.

Publication type:

Article

Identifying Gut Microbe-Host Phenotype Relationships Using Combinatorial Communities in Gnotobiotic Mice.

Published in:

Science Translational Medicine, 2014, v. 6, n. 220, p. 1, doi. 10.1126/scitranslmed.3008051

By:

Faith, Jeremiah J.;
Ahern, Philip P.;
Ridaura, Vanessa K.;
Jiye Cheng;
Gordon, Jeffrey I.

Publication type:

Article

Genomic Diversity and Fitness of E. coli Strains Recovered from the Intestinal and Urinary Tracts of Women with Recurrent Urinary Tract Infection.

Published in:

Science Translational Medicine, 2013, v. 5, n. 184, p. 1, doi. 10.1126/scitranslmed.3005497

By:

Chen, Swaine L.;
Meng Wu;
Henderson, Jeffrey P.;
Hooton, Thomas M.;
Hibbing, Michael E.;
Hultgren, Scott J.;
Gordon, Jeffrey I.

Publication type:

Article

The Human Gut Microbiota and Undernutrition.

Published in:

Science Translational Medicine, 2012, v. 4, n. 137, p. 1, doi. 10.1126/scitranslmed.3004347

By:

Gordon, Jeffrey I.;
Dewey, Kathryn G.;
Mills, David A.;
Medzhitov, Ruslan M.

Publication type:

Article