Works matching AU Gonzalez-Beltran, Alejandra

Results: 27

OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets.

Published in:

Bioinformatics, 2013, v. 29, n. 4, p. 525, doi. 10.1093/bioinformatics/bts718

By:

Maguire, Eamonn;
González-Beltrán, Alejandra;
Whetzel, Patricia L.;
Sansone, Susanna-Assunta;
Rocca-Serra, Philippe

Publication type:

Article

Ten simple rules for making a vocabulary FAIR.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009041

By:

Cox, Simon J. D.;
Gonzalez-Beltran, Alejandra N.;
Magagna, Barbara;
Marinescu, Maria-Cristina

Publication type:

Article

From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0127612

By:

González-Beltrán, Alejandra;
Li, Peter;
Zhao, Jun;
Avila-Garcia, Maria Susana;
Roos, Marco;
Thompson, Mark;
van der Horst, Eelke;
Kaliyaperumal, Rajaram;
Luo, Ruibang;
Lee, Tin-Lap;
Lam, Tak-wah;
Edmunds, Scott C.;
Sansone, Susanna-Assunta;
Rocca-Serra, Philippe

Publication type:

Article

DataMed - an open source discovery index for finding biomedical datasets.

Published in:

2018

By:

Xiaoling Chen;
Gururaj, Anupama E.;
Ozyurt, Burak;
Ruiling Liu;
Soysal, Ergin;
Cohen, Trevor;
Tiryaki, Firat;
Yueling Li;
Nansu Zong;
Min Jiang;
Rogith, Deevakar;
Salimi, Mandana;
Hyeon-eui Kim;
Rocca-Serra, Philippe;
Gonzalez-Beltran, Alejandra;
Farcas, Claudiu;
Johnson, Todd;
Margolis, Ron;
Alter, George;
Sansone, Susanna-Assunta

Publication type:

journal article

Data discovery with DATS: exemplar adoptions and lessons learned.

Published in:

2018

By:

Gonzalez-Beltran, Alejandra N;
Campbell, John;
Dunn, Patrick;
Guijarro, Diana;
Ionescu, Sanda;
Kim, Hyeoneui;
Lyle, Jared;
Wiser, Jeffrey;
Sansone, Susanna-Assunta;
Rocca-Serra, Philippe

Publication type:

journal article

The center for expanded data annotation and retrieval.

Published in:

2015

By:

Musen, Mark A.;
Bean, Carol A.;
Kei-Hoi Cheung;
Dumontier, Michel;
Durante, Kim A.;
Gevaert, Olivier;
Gonzalez-Beltran, Alejandra;
Khatri, Purvesh;
Kleinstein, Steven H.;
O'Connor, Martin J.;
Pouliot, Yannick;
Rocca-Serra, Philippe;
Sansone, Susanna-Assunta;
Wiser, Jeffrey A.;
Cheung, Kei-Hoi;
CEDAR team

Publication type:

journal article

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

Published in:

PLoS Biology, 2017, v. 15, n. 6, p. 1, doi. 10.1371/journal.pbio.2001414

By:

McMurry, Julie A.;
Juty, Nick;
Blomberg, Niklas;
Burdett, Tony;
Conlin, Tom;
Conte, Nathalie;
Courtot, Mélanie;
Deck, John;
Dumontier, Michel;
Fellows, Donal K.;
Gonzalez-Beltran, Alejandra;
Gormanns, Philipp;
Grethe, Jeffrey;
Hastings, Janna;
Hériché, Jean-Karim;
Hermjakob, Henning;
Ison, Jon C.;
Jimenez, Rafael C.;
Jupp, Simon;
Kunze, John

Publication type:

Article

Semantic concept schema of the linear mixed model of experimental observations.

Published in:

Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0409-7

By:

Ćwiek-Kupczyńska, Hanna;
Filipiak, Katarzyna;
Markiewicz, Augustyn;
Rocca-Serra, Philippe;
Gonzalez-Beltran, Alejandra N.;
Sansone, Susanna-Assunta;
Millet, Emilie J.;
van Eeuwijk, Fred;
Ławrynowicz, Agnieszka;
Krajewski, Paweł

Publication type:

Article

Data standards can boost metabolomics research, and if there is a will, there is a way.

Published in:

Metabolomics, 2016, v. 12, n. 1, p. N.PAG, doi. 10.1007/s11306-015-0879-3

By:

Rocca-Serra, Philippe;
Salek, Reza M.;
Arita, Masanori;
Correa, Elon;
Dayalan, Saravanan;
Gonzalez-Beltran, Alejandra;
Ebbels, Tim;
Goodacre, Royston;
Hastings, Janna;
Haug, Kenneth;
Koulman, Albert;
Nikolski, Macha;
Oresic, Matej;
Sansone, Susanna-Assunta;
Schober, Daniel;
Smith, James;
Steinbeck, Christoph;
Viant, Mark R.;
Neumann, Steffen

Publication type:

Article

Addendum: The FAIR Guiding Principles for scientific data management and stewardship.

Published in:

2019

By:

Wilkinson, Mark D.;
Dumontier, Michel;
Jan Aalbersberg, Ijsbrand;
Appleton, Gabrielle;
Axton, Myles;
Baak, Arie;
Blomberg, Niklas;
Boiten, Jan-Willem;
da Silva Santos, Luiz Bonino;
Bourne, Philip E.;
Bouwman, Jildau;
Brookes, Anthony J.;
Clark, Tim;
Crosas, Mercè;
Dillo, Ingrid;
Dumon, Olivier;
Edmunds, Scott;
Evelo, Chris T.;
Finkers, Richard;
Gonzalez-Beltran, Alejandra

Publication type:

Correction Notice

BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw075

By:

McQuilton, Peter;
Gonzalez-Beltran, Alejandra;
Rocca-Serra, Philippe;
Thurston, Milo;
Lister, Allyson;
Maguire, Eamonn;
Sansone, Susanna-Assunta

Publication type:

Article

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bau132

By:

Rocca-Serra, Philippe;
Walls, Ramona;
Parnell, Jacob;
Gallery, Rachel;
Jie Zheng;
Sansone, Susanna-Assunta;
Gonzalez-Beltran, Alejandra

Publication type:

Article

The MetaboLights repository: curation challenges in metabolomics.

Published in:

Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat029

By:

Salek, Reza M.;
Haug, Kenneth;
Conesa, Pablo;
Hastings, Janna;
Williams, Mark;
Mahendraker, Tejasvi;
Maguire, Eamonn;
González-Beltrán, Alejandra N.;
Rocca-Serra, Philippe;
Sansone, Susanna-Assunta;
Steinbeck, Christoph

Publication type:

Article

Machine actionable metadata models.

Published in:

Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01707-6

By:

Batista, Dominique;
Gonzalez-Beltran, Alejandra;
Sansone, Susanna-Assunta;
Rocca-Serra, Philippe

Publication type:

Article

Advanced techniques for fusion data visualisation.

Published in:

Frontiers in Physics, 2025, p. 1, doi. 10.3389/fphy.2025.1569248

By:

Bhatia, Nitesh;
Costa, Rui;
Jackson, Samuel;
Cummings, Nathan;
Pamela, Stanislas J. P.;
de Witt, Shaun;
Gonzalez Beltran, Alejandra N.;
Akers, Robert

Publication type:

Article

The Ontology for Biomedical Investigations.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0154556

By:

Bandrowski, Anita;
Brinkman, Ryan;
Brochhausen, Mathias;
Brush, Matthew H.;
Bug, Bill;
Chibucos, Marcus C.;
Clancy, Kevin;
Courtot, Mélanie;
Derom, Dirk;
Dumontier, Michel;
Fan, Liju;
Fostel, Jennifer;
Fragoso, Gilberto;
Gibson, Frank;
Gonzalez-Beltran, Alejandra;
Haendel, Melissa A.;
He, Yongqun;
Heiskanen, Mervi;
Hernandez-Boussard, Tina;
Jensen, Mark

Publication type:

Article

linkedISA: semantic representation of ISA-Tab experimental metadata.

Published in:

BMC Bioinformatics, 2014, v. 15, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-15-S14-S4

By:

González-Beltrán, Alejandra;
Maguire, Eamonn;
Sansone, Susanna-Assunta;
Rocca-Serra, Philippe

Publication type:

Article

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.

Published in:

BMC Bioinformatics, 2014, v. 15, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-15-S1-S11

By:

González-Beltrán, Alejandra;
Neumann, Steffen;
Maguire, Eamonn;
Sansone, Susanna-Assunta;
Rocca-Serra, Philippe

Publication type:

Article

Federated ontology-based queries over cancer data.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-13-S1-S9

By:

González-Beltrán, Alejandra;
Tagger, Ben;
Finkelstein, Anthony

Publication type:

Article

Interoperable and scalable data analysis with microservices: applications in metabolomics.

Published in:

Bioinformatics, 2019, v. 35, n. 19, p. 3752, doi. 10.1093/bioinformatics/btz160

By:

Khoonsari, Payam Emami;
Moreno, Pablo;
Bergmann, Sven;
Burman, Joachim;
Capuccini, Marco;
Carone, Matteo;
Cascante, Marta;
Atauri, Pedro de;
Foguet, Carles;
Gonzalez-Beltran, Alejandra N;
Hankemeier, Thomas;
Haug, Kenneth;
He, Sijin;
Herman, Stephanie;
Johnson, David;
Kale, Namrata;
Larsson, Anders;
Neumann, Steffen;
Peters, Kristian;
Pireddu, Luca

Publication type:

Article

ISA API: An open platform for interoperable life science experimental metadata.

Published in:

GigaScience, 2021, v. 10, n. 9, p. 1, doi. 10.1093/gigascience/giab060

By:

Johnson, David;
Batista, Dominique;
Cochrane, Keeva;
Davey, Robert P;
Etuk, Anthony;
Gonzalez-Beltran, Alejandra;
Haug, Kenneth;
Izzo, Massimiliano;
Larralde, Martin;
Lawson, Thomas N;
Minotto, Alice;
Moreno, Pablo;
Nainala, Venkata Chandrasekhar;
O'Donovan, Claire;
Pireddu, Luca;
Roger, Pierrick;
Shaw, Felix;
Steinbeck, Christoph;
Weber, Ralf J M;
Sansone, Susanna-Assunta

Publication type:

Article

Community standards for open cell migration data.

Published in:

GigaScience, 2020, v. 9, n. 5, p. N.PAG, doi. 10.1093/gigascience/giaa041

By:

Gonzalez-Beltran, Alejandra N;
Masuzzo, Paola;
Ampe, Christophe;
Bakker, Gert-Jan;
Besson, Sébastien;
Eibl, Robert H;
Friedl, Peter;
Gunzer, Matthias;
Kittisopikul, Mark;
Dévédec, Sylvia E Le;
Leo, Simone;
Moore, Josh;
Paran, Yael;
Prilusky, Jaime;
Rocca-Serra, Philippe;
Roudot, Philippe;
Schuster, Marc;
Sergeant, Gwendolien;
Swedlow, Jason R;
van Erp, Merijn

Publication type:

Article

PhenoMeNal: processing and analysis of metabolomics data in the cloud.

Published in:

GigaScience, 2019, v. 8, n. 2, p. N.PAG, doi. 10.1093/gigascience/giy149

By:

Peters, Kristian;
Bradbury, James;
Bergmann, Sven;
Capuccini, Marco;
Cascante, Marta;
de Atauri, Pedro;
Ebbels, Timothy M D;
Foguet, Carles;
Glen, Robert;
Gonzalez-Beltran, Alejandra;
Günther, Ulrich L;
Handakas, Evangelos;
Hankemeier, Thomas;
Haug, Kenneth;
Herman, Stephanie;
Holub, Petr;
Izzo, Massimiliano;
Jacob, Daniel;
Johnson, David;
Jourdan, Fabien

Publication type:

Article

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D600, doi. 10.1093/nar/gkt961

By:

Hunter, Sarah;
Corbett, Matthew;
Denise, Hubert;
Fraser, Matthew;
Gonzalez-Beltran, Alejandra;
Hunter, Christopher;
Jones, Philip;
Leinonen, Rasko;
McAnulla, Craig;
Maguire, Eamonn;
Maslen, John;
Mitchell, Alex;
Nuka, Gift;
Oisel, Arnaud;
Pesseat, Sebastien;
Radhakrishnan, Rajesh;
Rocca-Serra, Philippe;
Scheremetjew, Maxim;
Sterk, Peter;
Vaughan, Daniel

Publication type:

Article

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D781, doi. 10.1093/nar/gks1004

By:

Kenneth Haug;
Salek, Reza M.;
Conesa, Pablo;
Hastings, Janna;
de Matos, Paula;
Rijnbeek, Mark;
Mahendraker, Tejasvi;
Williams, Mark;
Neumann, Steffen;
Rocca-Serra, Philippe;
Maguire, Eamonn;
González-Beltrán, Alejandra;
Sansone, Susanna-Assunta;
Griffin, Julian L.;
Steinbeck, Christoph

Publication type:

Article

FAIRsharing as a community approach to standards, repositories and policies.

Published in:

2019

By:

Sansone, Susanna-Assunta;
McQuilton, Peter;
Rocca-Serra, Philippe;
Gonzalez-Beltran, Alejandra;
Izzo, Massimiliano;
Lister, Allyson L.;
Thurston, Milo

Publication type:

Letter

A Framework for Active DMPs in Photon and Neutron Science Large-Scale Facilities.

Published in:

Data Science Journal, 2024, v. 23, p. 1, doi. 10.5334/dsj-2024-004

By:

Görzig, Heike;
Gonzalez Beltran, Alejandra N.;
Engel, Felix;
Matthews, Brian

Publication type:

Article